Download evaluate.test.json from programmable-genomics/BATv1: direct link, hf CLI and curl.
- Browser
- Download file 2.12 kB
-
https://huggingface.co/programmable-genomics/BATv1/resolve/main/evaluate.test.json
- Command line
-
hf download hf://programmable-genomics/BATv1/evaluate.test.json
-
curl -L -o evaluate.test.json https://huggingface.co/programmable-genomics/BATv1/resolve/main/evaluate.test.json
2.12 kB
| { | |
| "adam_lr": 0.01, | |
| "adam_wd": 0.0, | |
| "batch_size": 64, | |
| "chroms": [ | |
| "chr1", | |
| "chr3", | |
| "chr6" | |
| ], | |
| "compile": true, | |
| "compile_mode": "max-autotune", | |
| "controls": [ | |
| [ | |
| "control.plus.bw", | |
| "control.minus.bw" | |
| ] | |
| ], | |
| "device": "cuda", | |
| "devices": 1, | |
| "dtype": "float32", | |
| "early_stopping": 100, | |
| "exclusion_lists": [ | |
| "ENCFF940NTE.bed.gz" | |
| ], | |
| "expansion": 2, | |
| "in_window": 2114, | |
| "loci": [ | |
| "train_peaks.fold_0.bed", | |
| "valid_peaks.fold_0.bed", | |
| "test_peaks.fold_0.bed" | |
| ], | |
| "loss_weights": [ | |
| 1.333, | |
| 0.274 | |
| ], | |
| "lw_lr": 0.001, | |
| "lw_momentum": 0.9, | |
| "lw_wd": 0.0, | |
| "max_epochs": 20, | |
| "max_jitter": 500, | |
| "min_total_steps": 20000, | |
| "model": "cherimoya.fold_0.torch", | |
| "muon_lr": 0.025, | |
| "muon_wd": 0.03, | |
| "n_filters": 32, | |
| "n_layers": 9, | |
| "n_warmup_epochs": 2, | |
| "name": "cherimoya.fold_0", | |
| "negative_ratio": 0.25, | |
| "negatives": [ | |
| "train_nonpeaks.fold_0.bed", | |
| "valid_nonpeaks.fold_0.bed", | |
| "test_nonpeaks.fold_0.bed" | |
| ], | |
| "num_workers": 1, | |
| "out_window": 1000, | |
| "performance_filename": "cherimoya.fold_0.test.performance.tsv", | |
| "progress_bar": null, | |
| "random_state": 744289669, | |
| "residual_scale": 0.15, | |
| "reverse_complement": true, | |
| "reverse_complement_average": false, | |
| "sequences": "hg38.fa", | |
| "signals": [ | |
| [ | |
| "ENCFF782CZN.bigWig", | |
| "ENCFF958KCU.bigWig" | |
| ] | |
| ], | |
| "skip": false, | |
| "summits": false, | |
| "test_chroms": [ | |
| "chr1", | |
| "chr3", | |
| "chr6" | |
| ], | |
| "training_chroms": [ | |
| "chr2", | |
| "chr4", | |
| "chr5", | |
| "chr7", | |
| "chr9", | |
| "chr10", | |
| "chr11", | |
| "chr12", | |
| "chr13", | |
| "chr14", | |
| "chr15", | |
| "chr16", | |
| "chr17", | |
| "chr18", | |
| "chr19", | |
| "chr21", | |
| "chr22", | |
| "chrX", | |
| "chrY" | |
| ], | |
| "validation_chroms": [ | |
| "chr8", | |
| "chr20" | |
| ], | |
| "verbose": true | |
| } |