Upload 11 files
Browse files- config.json +35 -0
- optimizer.pt +3 -0
- pytorch_model.bin +3 -0
- rng_state.pth +3 -0
- scheduler.pt +3 -0
- special_tokens_map.json +1 -0
- tokenizer.json +0 -0
- tokenizer_config.json +1 -0
- trainer_state.json +64 -0
- training_args.bin +3 -0
- vocab.txt +0 -0
config.json
ADDED
|
@@ -0,0 +1,35 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"_name_or_path": "microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract",
|
| 3 |
+
"architectures": [
|
| 4 |
+
"BertForTokenClassification"
|
| 5 |
+
],
|
| 6 |
+
"attention_probs_dropout_prob": 0.1,
|
| 7 |
+
"gradient_checkpointing": false,
|
| 8 |
+
"hidden_act": "gelu",
|
| 9 |
+
"hidden_dropout_prob": 0.1,
|
| 10 |
+
"hidden_size": 768,
|
| 11 |
+
"id2label": {
|
| 12 |
+
"0": "O",
|
| 13 |
+
"1": "B",
|
| 14 |
+
"2": "I"
|
| 15 |
+
},
|
| 16 |
+
"initializer_range": 0.02,
|
| 17 |
+
"intermediate_size": 3072,
|
| 18 |
+
"label2id": {
|
| 19 |
+
"B": "1",
|
| 20 |
+
"I": "2",
|
| 21 |
+
"O": "0"
|
| 22 |
+
},
|
| 23 |
+
"layer_norm_eps": 1e-12,
|
| 24 |
+
"max_position_embeddings": 512,
|
| 25 |
+
"model_type": "bert",
|
| 26 |
+
"num_attention_heads": 12,
|
| 27 |
+
"num_hidden_layers": 12,
|
| 28 |
+
"pad_token_id": 0,
|
| 29 |
+
"position_embedding_type": "absolute",
|
| 30 |
+
"torch_dtype": "float32",
|
| 31 |
+
"transformers_version": "4.9.0",
|
| 32 |
+
"type_vocab_size": 2,
|
| 33 |
+
"use_cache": true,
|
| 34 |
+
"vocab_size": 30522
|
| 35 |
+
}
|
optimizer.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:a97c7e990e095dfeb687fc5cbb54298ea3f7e906adcf56628d2cd165be0dcb7c
|
| 3 |
+
size 871267045
|
pytorch_model.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:9be83d00ead645587088fa8bd37634f4f21f955d7bfc6e95ced3835772974fc8
|
| 3 |
+
size 435659249
|
rng_state.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:b37792fab7334e28bc7b9709d2a4e4f6a5c1b2f530d03c83ab853effd8330c4d
|
| 3 |
+
size 14503
|
scheduler.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:e2cb71d5c85e1a53f13a75b22ce8c2ea93c9cde6de5d91272ee8a1c8b495d41e
|
| 3 |
+
size 623
|
special_tokens_map.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"unk_token": "[UNK]", "sep_token": "[SEP]", "pad_token": "[PAD]", "cls_token": "[CLS]", "mask_token": "[MASK]"}
|
tokenizer.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
tokenizer_config.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"do_lower_case": true, "unk_token": "[UNK]", "sep_token": "[SEP]", "pad_token": "[PAD]", "cls_token": "[CLS]", "mask_token": "[MASK]", "tokenize_chinese_chars": true, "strip_accents": null, "special_tokens_map_file": null, "name_or_path": "microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract", "do_basic_tokenize": true, "never_split": null, "tokenizer_class": "BertTokenizer"}
|
trainer_state.json
ADDED
|
@@ -0,0 +1,64 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"best_metric": 7.571461901534349e-05,
|
| 3 |
+
"best_model_checkpoint": "data/models/variant/final/checkpoint-1341",
|
| 4 |
+
"epoch": 3.0,
|
| 5 |
+
"global_step": 1341,
|
| 6 |
+
"is_hyper_param_search": false,
|
| 7 |
+
"is_local_process_zero": true,
|
| 8 |
+
"is_world_process_zero": true,
|
| 9 |
+
"log_history": [
|
| 10 |
+
{
|
| 11 |
+
"epoch": 1.0,
|
| 12 |
+
"eval_accuracy": 1.0,
|
| 13 |
+
"eval_f1": 0.0,
|
| 14 |
+
"eval_loss": 0.003437989391386509,
|
| 15 |
+
"eval_precision": 0.0,
|
| 16 |
+
"eval_recall": 0.0,
|
| 17 |
+
"eval_runtime": 1.0426,
|
| 18 |
+
"eval_samples_per_second": 0.959,
|
| 19 |
+
"eval_steps_per_second": 0.959,
|
| 20 |
+
"step": 447
|
| 21 |
+
},
|
| 22 |
+
{
|
| 23 |
+
"epoch": 1.12,
|
| 24 |
+
"learning_rate": 3.17327140606411e-05,
|
| 25 |
+
"loss": 0.2616,
|
| 26 |
+
"step": 500
|
| 27 |
+
},
|
| 28 |
+
{
|
| 29 |
+
"epoch": 2.0,
|
| 30 |
+
"eval_accuracy": 1.0,
|
| 31 |
+
"eval_f1": 0.0,
|
| 32 |
+
"eval_loss": 0.0002594970865175128,
|
| 33 |
+
"eval_precision": 0.0,
|
| 34 |
+
"eval_recall": 0.0,
|
| 35 |
+
"eval_runtime": 1.23,
|
| 36 |
+
"eval_samples_per_second": 0.813,
|
| 37 |
+
"eval_steps_per_second": 0.813,
|
| 38 |
+
"step": 894
|
| 39 |
+
},
|
| 40 |
+
{
|
| 41 |
+
"epoch": 2.24,
|
| 42 |
+
"learning_rate": 1.2866653382495381e-05,
|
| 43 |
+
"loss": 0.1202,
|
| 44 |
+
"step": 1000
|
| 45 |
+
},
|
| 46 |
+
{
|
| 47 |
+
"epoch": 3.0,
|
| 48 |
+
"eval_accuracy": 1.0,
|
| 49 |
+
"eval_f1": 0.0,
|
| 50 |
+
"eval_loss": 7.571461901534349e-05,
|
| 51 |
+
"eval_precision": 0.0,
|
| 52 |
+
"eval_recall": 0.0,
|
| 53 |
+
"eval_runtime": 1.073,
|
| 54 |
+
"eval_samples_per_second": 0.932,
|
| 55 |
+
"eval_steps_per_second": 0.932,
|
| 56 |
+
"step": 1341
|
| 57 |
+
}
|
| 58 |
+
],
|
| 59 |
+
"max_steps": 1341,
|
| 60 |
+
"num_train_epochs": 3,
|
| 61 |
+
"total_flos": 1399256782801920.0,
|
| 62 |
+
"trial_name": null,
|
| 63 |
+
"trial_params": null
|
| 64 |
+
}
|
training_args.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:2b19ea8c77cbbb6c7f9a8aaa38195560d00f575c22c2ae384209c9da73743ed0
|
| 3 |
+
size 2671
|
vocab.txt
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|