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language:
- en
tags:
- clinicalcode
- medical-imaging
- segmentation
- ct
- mri
license: other
license_name: per-artifact-licenses
license_link: https://huggingface.co/qicq1c/ClinicalCode#licenses
---
# ClinicalCode
Checkpoints for **Animating the Clinical Source Code of Disease Progression for Medical World Models**.
[Project page](https://qic999.github.io/projects/ClinicalCode/) · [Code and commands](https://github.com/qic999/ClinicalCode)
## Checkpoints
| File | Function | Source |
| --- | --- | --- |
| [difftumor_hcc_fold0.pt](https://huggingface.co/qicq1c/ClinicalCode/resolve/main/difftumor_hcc_fold0.pt) | CT tumor segmentation within a supplied liver mask | HCC fold-0 DynUNet used in our experiments, based on [DiffTumor](https://github.com/MrGiovanni/DiffTumor) / [MeWM](https://github.com/scott-yjyang/MeWM) |
| [ct_decoder.freeze.json](https://huggingface.co/qicq1c/ClinicalCode/resolve/main/ct_decoder.freeze.json) | CT treatment-action decoding | ClinicalCode frozen Lingshu-I-8B decoder; identical to the decoder bundled with the public CT case |
| [Raidionics-MRI_TumorCE_Postop-v13.zip](https://huggingface.co/qicq1c/ClinicalCode/resolve/main/Raidionics-MRI_TumorCE_Postop-v13.zip) | MRI enhancing-tumor segmentation | Unmodified [Raidionics v1.3 archive](https://github.com/raidionics/Raidionics-models/releases/download/v1.3.0-rc/Raidionics-MRI_TumorCE_Postop-v13.zip) |
| [Raidionics-MRI_Cavity-v13.zip](https://huggingface.co/qicq1c/ClinicalCode/resolve/main/Raidionics-MRI_Cavity-v13.zip) | MRI resection-cavity segmentation | Unmodified [Raidionics v1.3 archive](https://github.com/raidionics/Raidionics-models/releases/download/v1.3.0-rc/Raidionics-MRI_Cavity-v13.zip) |
## Download
```bash
python -m pip install huggingface_hub
hf download qicq1c/ClinicalCode difftumor_hcc_fold0.pt --local-dir models/difftumor
hf download qicq1c/ClinicalCode ct_decoder.freeze.json --local-dir models/decoder
hf download qicq1c/ClinicalCode \
Raidionics-MRI_TumorCE_Postop-v13.zip Raidionics-MRI_Cavity-v13.zip \
--local-dir models/raidionics/archives
unzip -q models/raidionics/archives/Raidionics-MRI_TumorCE_Postop-v13.zip -d models/raidionics
unzip -q models/raidionics/archives/Raidionics-MRI_Cavity-v13.zip -d models/raidionics
```
File hashes are recorded in [SHA256SUMS](https://huggingface.co/qicq1c/ClinicalCode/blob/main/SHA256SUMS). The frozen language models are available from their original Hugging Face repositories, including [Lingshu-I-8B](https://huggingface.co/lingshu-medical-mllm/Lingshu-I-8B).
## Licenses
- ClinicalCode decoder: [MIT](https://huggingface.co/qicq1c/ClinicalCode/blob/main/LICENSE-ClinicalCode).
- HCC DynUNet checkpoint: retained with the [MeWM CC BY-NC 4.0 license](https://huggingface.co/qicq1c/ClinicalCode/blob/main/LICENSE-MeWM.md). Original [MeWM license](https://github.com/scott-yjyang/MeWM/blob/63bb931102254cb81dcd6ee6bdd86eeedeccf9d3/LICENSE.md).
- Raidionics model archives: [BSD-2-Clause](https://huggingface.co/qicq1c/ClinicalCode/blob/main/LICENSE-Raidionics), copyright David Bouget. Original [model repository](https://github.com/raidionics/Raidionics-models).
## Citation
```bibtex
@misc{chen2026clinicalcode,
title = {Animating the Clinical Source Code of Disease Progression for Medical World Models},
author = {Chen, Qi and Yuille, Alan L. and Chen, Jieneng},
year = {2026},
url = {https://github.com/qic999/ClinicalCode}
}
```
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