first upload
Browse files- .gitattributes +1 -0
- README.md +31 -1
- bert-base-chinese/config.json +26 -0
- bert-base-chinese/config_decoder.json +28 -0
- bert-base-chinese/pytorch_model.bin +3 -0
- bert-base-chinese/tokenizer.json +0 -0
- bert-base-chinese/tokenizer_config.json +1 -0
- bert-base-chinese/vocab.txt +0 -0
- bert-base-uncased/config.json +24 -0
- bert-base-uncased/config_decoder.json +26 -0
- bert-base-uncased/model.safetensors +3 -0
- bert-base-uncased/pytorch_model.bin +3 -0
- bert-base-uncased/tokenizer.json +0 -0
- bert-base-uncased/tokenizer_config.json +3 -0
- bert-base-uncased/vocab.txt +0 -0
- checkpoint_radar_plus.pth +3 -0
- checkpoint_radar_plus_finetuned_on_merlin.pth +3 -0
- checkpoint_radar_pretrain.pth +3 -0
- checkpoint_unet.pth +3 -0
- radar_fig0.png +3 -0
.gitattributes
CHANGED
|
@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
|
|
| 33 |
*.zip filter=lfs diff=lfs merge=lfs -text
|
| 34 |
*.zst filter=lfs diff=lfs merge=lfs -text
|
| 35 |
*tfevents* filter=lfs diff=lfs merge=lfs -text
|
|
|
|
|
|
| 33 |
*.zip filter=lfs diff=lfs merge=lfs -text
|
| 34 |
*.zst filter=lfs diff=lfs merge=lfs -text
|
| 35 |
*tfevents* filter=lfs diff=lfs merge=lfs -text
|
| 36 |
+
radar_fig0.png filter=lfs diff=lfs merge=lfs -text
|
README.md
CHANGED
|
@@ -1,3 +1,33 @@
|
|
| 1 |
---
|
| 2 |
-
license: cc-by-sa-4.0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 3 |
---
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
---
|
| 2 |
+
license: cc-by-nc-sa-4.0
|
| 3 |
+
language:
|
| 4 |
+
- en
|
| 5 |
+
tags:
|
| 6 |
+
- vision-language pretraining
|
| 7 |
+
- medical
|
| 8 |
+
- ct diagnosis
|
| 9 |
---
|
| 10 |
+
|
| 11 |
+
# RADAR: An Expert-Level Generalist AI for Abdominal CT Diagnosis
|
| 12 |
+
[](https://github.com/alibaba-damo-academy/damo-radar)
|
| 13 |
+
[](https://zenodo.org/records/21271172)
|
| 14 |
+
[](https://creativecommons.org/licenses/by-nc-sa/4.0/)
|
| 15 |
+
|
| 16 |
+
RADAR is a generalist vision-language model trained on over 400,000 contrast-enhanced abdominal CT examinations with 15 million anatomy-aware image–text pairs, learning directly from clinical reports without manual annotation. RADAR provides a scalable and versatile framework for radiology AI, demonstrating expert-level performance across both routine and complex clinical tasks.
|
| 17 |
+
|
| 18 |
+
<p align="center">
|
| 19 |
+
<img src="radar_fig0.png" alt="RADAR Overview" width="90%">
|
| 20 |
+
</p>
|
| 21 |
+
|
| 22 |
+
## Model Preparation
|
| 23 |
+
|
| 24 |
+
Pre-trained checkpoints are available on [HuggingFace](https://huggingface.co/datasets/radar-generalist/RADAR).
|
| 25 |
+
|
| 26 |
+
| File | Description | Destination |
|
| 27 |
+
| --- | --- | --- |
|
| 28 |
+
| `checkpoint_radar_pretrain.pth` | RADAR pre-trained on RAD-CT | `radar/ckpt/checkpoint_radar_pretrain.pth` |
|
| 29 |
+
| `bert-base-chinese` | BERT tokenizer and model (Chinese) | `radar/ckpt/bert-base-chinese/` |
|
| 30 |
+
| `bert-base-uncased` | BERT tokenizer and model (English) | `radar/ckpt/bert-base-uncased/` |
|
| 31 |
+
| `checkpoint_unet.pth` | Pretrained VisionBranch (UNet) checkpoint | `radar/ckpt/checkpoint_unet.pth` |
|
| 32 |
+
| `checkpoint_radar_plus.pth` | RADAR+ checkpoint trained from scratch on Merlin-CT-Train | `radar/ckpt/checkpoint_radar_plus.pth` |
|
| 33 |
+
| `checkpoint_radar_plus_finetuned_on_merlin.pth` | RADAR+ checkpoint pretrained on RAD-CT and finetuned on Merlin-CT-Train | `radar/ckpt/checkpoint_radar_plus_finetuned_on_merlin.pth` |
|
bert-base-chinese/config.json
ADDED
|
@@ -0,0 +1,26 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"architectures": [
|
| 3 |
+
"BertForMaskedLM"
|
| 4 |
+
],
|
| 5 |
+
"attention_probs_dropout_prob": 0.1,
|
| 6 |
+
"directionality": "bidi",
|
| 7 |
+
"hidden_act": "gelu",
|
| 8 |
+
"hidden_dropout_prob": 0.1,
|
| 9 |
+
"hidden_size": 768,
|
| 10 |
+
"initializer_range": 0.02,
|
| 11 |
+
"intermediate_size": 3072,
|
| 12 |
+
"layer_norm_eps": 1e-12,
|
| 13 |
+
"max_position_embeddings": 512,
|
| 14 |
+
"model_type": "bert",
|
| 15 |
+
"num_attention_heads": 12,
|
| 16 |
+
"num_hidden_layers": 12,
|
| 17 |
+
"pad_token_id": 0,
|
| 18 |
+
"pooler_fc_size": 768,
|
| 19 |
+
"pooler_num_attention_heads": 12,
|
| 20 |
+
"pooler_num_fc_layers": 3,
|
| 21 |
+
"pooler_size_per_head": 128,
|
| 22 |
+
"pooler_type": "first_token_transform",
|
| 23 |
+
"type_vocab_size": 2,
|
| 24 |
+
"vocab_size": 21128,
|
| 25 |
+
"add_type_embeddings": false
|
| 26 |
+
}
|
bert-base-chinese/config_decoder.json
ADDED
|
@@ -0,0 +1,28 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"architectures": [
|
| 3 |
+
"BertForMaskedLM"
|
| 4 |
+
],
|
| 5 |
+
"attention_probs_dropout_prob": 0.1,
|
| 6 |
+
"directionality": "bidi",
|
| 7 |
+
"hidden_act": "gelu",
|
| 8 |
+
"hidden_dropout_prob": 0.1,
|
| 9 |
+
"hidden_size": 768,
|
| 10 |
+
"initializer_range": 0.02,
|
| 11 |
+
"intermediate_size": 3072,
|
| 12 |
+
"layer_norm_eps": 1e-12,
|
| 13 |
+
"max_position_embeddings": 512,
|
| 14 |
+
"model_type": "bert",
|
| 15 |
+
"num_attention_heads": 12,
|
| 16 |
+
"num_hidden_layers": 12,
|
| 17 |
+
"pad_token_id": 0,
|
| 18 |
+
"pooler_fc_size": 768,
|
| 19 |
+
"pooler_num_attention_heads": 12,
|
| 20 |
+
"pooler_num_fc_layers": 3,
|
| 21 |
+
"pooler_size_per_head": 128,
|
| 22 |
+
"pooler_type": "first_token_transform",
|
| 23 |
+
"type_vocab_size": 2,
|
| 24 |
+
"vocab_size": 21128,
|
| 25 |
+
"add_type_embeddings": false,
|
| 26 |
+
"encoder_width": 768,
|
| 27 |
+
"add_cross_attention": true
|
| 28 |
+
}
|
bert-base-chinese/pytorch_model.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:8a693db616eaf647ed2bfe531e1fa446637358fc108a8bf04e8d4db17e837ee9
|
| 3 |
+
size 411577189
|
bert-base-chinese/tokenizer.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
bert-base-chinese/tokenizer_config.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"do_lower_case": false, "model_max_length": 512}
|
bert-base-chinese/vocab.txt
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
bert-base-uncased/config.json
ADDED
|
@@ -0,0 +1,24 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"architectures": [
|
| 3 |
+
"BertForMaskedLM"
|
| 4 |
+
],
|
| 5 |
+
"attention_probs_dropout_prob": 0.1,
|
| 6 |
+
"gradient_checkpointing": false,
|
| 7 |
+
"hidden_act": "gelu",
|
| 8 |
+
"hidden_dropout_prob": 0.1,
|
| 9 |
+
"hidden_size": 768,
|
| 10 |
+
"initializer_range": 0.02,
|
| 11 |
+
"intermediate_size": 3072,
|
| 12 |
+
"layer_norm_eps": 1e-12,
|
| 13 |
+
"max_position_embeddings": 512,
|
| 14 |
+
"model_type": "bert",
|
| 15 |
+
"num_attention_heads": 12,
|
| 16 |
+
"num_hidden_layers": 12,
|
| 17 |
+
"pad_token_id": 0,
|
| 18 |
+
"position_embedding_type": "absolute",
|
| 19 |
+
"transformers_version": "4.6.0.dev0",
|
| 20 |
+
"type_vocab_size": 2,
|
| 21 |
+
"use_cache": true,
|
| 22 |
+
"vocab_size": 30522,
|
| 23 |
+
"add_type_embeddings": false
|
| 24 |
+
}
|
bert-base-uncased/config_decoder.json
ADDED
|
@@ -0,0 +1,26 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"architectures": [
|
| 3 |
+
"BertForMaskedLM"
|
| 4 |
+
],
|
| 5 |
+
"attention_probs_dropout_prob": 0.1,
|
| 6 |
+
"gradient_checkpointing": false,
|
| 7 |
+
"hidden_act": "gelu",
|
| 8 |
+
"hidden_dropout_prob": 0.1,
|
| 9 |
+
"hidden_size": 768,
|
| 10 |
+
"initializer_range": 0.02,
|
| 11 |
+
"intermediate_size": 3072,
|
| 12 |
+
"layer_norm_eps": 1e-12,
|
| 13 |
+
"max_position_embeddings": 512,
|
| 14 |
+
"model_type": "bert",
|
| 15 |
+
"num_attention_heads": 12,
|
| 16 |
+
"num_hidden_layers": 12,
|
| 17 |
+
"pad_token_id": 0,
|
| 18 |
+
"position_embedding_type": "absolute",
|
| 19 |
+
"transformers_version": "4.6.0.dev0",
|
| 20 |
+
"type_vocab_size": 2,
|
| 21 |
+
"use_cache": true,
|
| 22 |
+
"vocab_size": 30522,
|
| 23 |
+
"add_type_embeddings": false,
|
| 24 |
+
"encoder_width": 768,
|
| 25 |
+
"add_cross_attention": true
|
| 26 |
+
}
|
bert-base-uncased/model.safetensors
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:68d45e234eb4a928074dfd868cead0219ab85354cc53d20e772753c6bb9169d3
|
| 3 |
+
size 440449768
|
bert-base-uncased/pytorch_model.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:097417381d6c7230bd9e3557456d726de6e83245ec8b24f529f60198a67b203a
|
| 3 |
+
size 440473133
|
bert-base-uncased/tokenizer.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
bert-base-uncased/tokenizer_config.json
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"do_lower_case": true
|
| 3 |
+
}
|
bert-base-uncased/vocab.txt
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
checkpoint_radar_plus.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:4dd201111000fa11085d49eddf287520a37cc76288eaca93eab8f8510480f15a
|
| 3 |
+
size 1651336682
|
checkpoint_radar_plus_finetuned_on_merlin.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:cd5aae5635de3712312c067dd82114cd4c215e7dcfc11eb3619dab73fcceaebc
|
| 3 |
+
size 1651335230
|
checkpoint_radar_pretrain.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:5e8b1b50b92162fcafcf8231e51ffbe9d1be2be52ccff4f967e4beb71e4499f4
|
| 3 |
+
size 1566049482
|
checkpoint_unet.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:052bbe8cbbc5d23859cb8fe1935249e94c1ef733e8e4a79153e9fc8988e84985
|
| 3 |
+
size 208341958
|
radar_fig0.png
ADDED
|
Git LFS Details
|