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README.md
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base_model:
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- facebook/esm2_t33_650M_UR50D
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---
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# ANTICP3: Anticancer Protein Prediction using ESM2
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---
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## Model Details
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---
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##
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```python
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from transformers import AutoTokenizer, AutoModelForSequenceClassification
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import torch
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# Load tokenizer and model
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tokenizer = AutoTokenizer.from_pretrained("facebook/esm2_t33_650M_UR50D")
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model = AutoModelForSequenceClassification.from_pretrained("AmishaG/anticp3")
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# Example
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sequence = "MANCVVGYIGERCQYRDLKWWELRGGGGSGGGGSAPAFSVSPASGLSDGQSVSVSVSGAAAGETYYIAQCAPVGGQDACNPATATSFTTDASGAASFSFVVRKSYTGSTPEGTPVGSVDCATAACNLGAGNSGLDLGHVALTFGGGGGSGGGGSDHYNCVSSGGQCLYSACPIFTKIQGTCYRGKAKCCKLEHHHHHH"
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# Tokenize
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inputs = tokenizer(sequence, return_tensors="pt", truncation=True)
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# Run inference
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with torch.no_grad():
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logits = model(**inputs).logits
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probs = torch.nn.functional.softmax(logits, dim=-1)
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prediction = torch.argmax(probs, dim=1).item()
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labels = {0: "Non-Anticancer", 1: "Anticancer"}
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print("Prediction:", labels[prediction])
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- en
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base_model:
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- facebook/esm2_t33_650M_UR50D
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tags:
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- protein-classification
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- bioinformatics
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- anticancer
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- esm2
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- transformers
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- torch
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---
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# ANTICP3: Anticancer Protein Prediction
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This model is a fine-tuned version of [`facebook/esm2-t33-650M-UR50D`](https://huggingface.co/facebook/esm2_t33_650M_UR50D) designed for **binary classification of anticancer proteins (ACPs)** from their primary sequence.
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> **Developed by**: [G. P. S. Raghava Lab, IIIT-Delhi](https://webs.iiitd.edu.in/raghava/)
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>
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> **Model hosted by**: [Dr. GPS Raghava's Group](https://huggingface.co/raghavagps-group/anticp3)
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---
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## Model Details
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| Feature | Description |
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|--------------------|--------------------------------------------------------------|
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| **Base Model** | [`facebook/esm2_t33_650M_UR50D`](https://huggingface.co/facebook/esm2_t33_650M_UR50D) |
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| **Fine-tuned On** | Anticancer Protein Dataset |
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| **Model Type** | Binary Classification |
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| **Labels** | `0`: Non-Anticancer<br>`1`: Anticancer |
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| **Framework** | [Transformers](https://huggingface.co/docs/transformers) + PyTorch |
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| **Format** | `safetensors` |
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---
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## Usage
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Use this model with the Hugging Face `transformers` library:
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```python
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from transformers import AutoTokenizer, AutoModelForSequenceClassification
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import torch
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# Load tokenizer and fine-tuned model
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tokenizer = AutoTokenizer.from_pretrained("facebook/esm2_t33_650M_UR50D")
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model = AutoModelForSequenceClassification.from_pretrained("AmishaG/anticp3")
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# Example protein sequence
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sequence = "MANCVVGYIGERCQYRDLKWWELRGGGGSGGGGSAPAFSVSPASGLSDGQSVSVSVSGAAAGETYYIAQCAPVGGQDACNPATATSFTTDASGAASFSFVVRKSYTGSTPEGTPVGSVDCATAACNLGAGNSGLDLGHVALTFGGGGGSGGGGSDHYNCVSSGGQCLYSACPIFTKIQGTCYRGKAKCCKLEHHHHHH"
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# Tokenize and run inference
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inputs = tokenizer(sequence, return_tensors="pt", truncation=True)
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with torch.no_grad():
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logits = model(**inputs).logits
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probs = torch.nn.functional.softmax(logits, dim=-1)
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prediction = torch.argmax(probs, dim=1).item()
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labels = {0: "Non-Anticancer", 1: "Anticancer"}
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print("Prediction:", labels[prediction])
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