HNE2Cell / environment.yml
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name: hne2cell
channels:
- pytorch
- nvidia
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- blas=1.0=mkl
- brotli-python=1.0.9=py310h6a678d5_9
- bzip2=1.0.8=h7f98852_4
- ca-certificates=2025.2.25=h06a4308_0
- cairo=1.16.0=ha61ee94_1014
- charset-normalizer=3.3.2=pyhd3eb1b0_0
- cpython=3.10.17=py310hd8ed1ab_0
- cuda-cudart=12.4.127=0
- cuda-cupti=12.4.127=0
- cuda-libraries=12.4.1=0
- cuda-nvrtc=12.4.127=0
- cuda-nvtx=12.4.127=0
- cuda-opencl=12.4.127=0
- cuda-runtime=12.4.1=0
- cudatoolkit=11.8.0=h6a678d5_0
- expat=2.5.0=h27087fc_0
- ffmpeg=4.3=hf484d3e_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.1=hc2a2eb6_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=hca18f0e_0
- gdk-pixbuf=2.42.8=hff1cb4f_1
- gettext=0.21.1=h27087fc_0
- giflib=5.2.2=h5eee18b_0
- glib=2.74.1=h6239696_1
- glib-tools=2.74.1=h6239696_1
- gmp=6.3.0=h6a678d5_0
- gnutls=3.6.15=he1e5248_0
- icu=70.1=h27087fc_0
- intel-openmp=2023.1.0=hdb19cb5_46306
- jinja2=3.1.6=pyhd8ed1ab_0
- jpeg=9e=h166bdaf_2
- lame=3.100=h7b6447c_0
- lcms2=2.14=h6ed2654_0
- ld_impl_linux-64=2.39=hc81fddc_0
- lerc=4.0.0=h27087fc_0
- libcublas=12.4.5.8=0
- libcufft=11.2.1.3=0
- libcufile=1.9.1.3=0
- libcurand=10.3.5.147=0
- libcusolver=11.6.1.9=0
- libcusparse=12.3.1.170=0
- libdeflate=1.14=h166bdaf_0
- libffi=3.4.2=h7f98852_5
- libgcc-ng=12.2.0=h65d4601_19
- libglib=2.74.1=h606061b_1
- libgomp=12.2.0=h65d4601_19
- libiconv=1.17=h166bdaf_0
- libidn2=2.3.4=h5eee18b_0
- libjpeg-turbo=2.0.0=h9bf148f_0
- libnpp=12.2.5.30=0
- libnsl=2.0.0=h7f98852_0
- libnvfatbin=12.4.127=0
- libnvjitlink=12.4.127=0
- libnvjpeg=12.3.1.117=0
- libpng=1.6.38=h753d276_0
- libsqlite=3.40.0=h753d276_0
- libstdcxx-ng=12.2.0=h46fd767_19
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.4.0=h55922b4_4
- libunistring=0.9.10=h27cfd23_0
- libuuid=2.32.1=h7f98852_1000
- libwebp=1.2.4=h11a3e52_1
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.10.3=h7463322_0
- libzlib=1.2.13=h166bdaf_4
- llvm-openmp=14.0.6=h9e868ea_0
- markupsafe=2.1.5=py310h2372a71_0
- mkl=2023.1.0=h213fc3f_46344
- mkl-service=2.4.0=py310h5eee18b_2
- mkl_fft=1.3.11=py310h5eee18b_0
- mkl_random=1.2.8=py310h1128e8f_0
- mpc=1.3.1=h5eee18b_0
- mpfr=4.2.1=h5eee18b_0
- mpmath=1.3.0=pyhd8ed1ab_1
- ncurses=6.3=h27087fc_1
- nettle=3.7.3=hbbd107a_1
- openh264=2.1.1=h4ff587b_0
- openjpeg=2.5.0=h7d73246_1
- openslide=3.4.1=h71beb9a_5
- openssl=3.0.16=h5eee18b_0
- pcre2=10.40=hc3806b6_0
- pip=22.3.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pthread-stubs=0.4=h36c2ea0_1001
- python=3.10.6=ha86cf86_0_cpython
- python_abi=3.10=2_cp310
- pytorch=2.5.1=py3.10_cuda12.4_cudnn9.1.0_0
- pytorch-cuda=12.4=hc786d27_7
- pytorch-mutex=1.0=cuda
- readline=8.1.2=h0f457ee_0
- setuptools=65.5.1=pyhd8ed1ab_0
- sqlite=3.40.0=h4ff8645_0
- tbb=2021.8.0=hdb19cb5_0
- tk=8.6.12=h27826a3_0
- torchtriton=3.1.0=py310
- tzdata=2022f=h191b570_0
- wheel=0.38.4=pyhd8ed1ab_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7b6447c_0
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.2=h6239696_4
- pip:
- absl-py==2.1.0
- accelerate==0.33.0
- affine==2.4.0
- albumentations==1.3.0
- anyio==4.4.0
- appdirs==1.4.4
- argon2-cffi==23.1.0
- argon2-cffi-bindings==21.2.0
- arrow==1.3.0
- asttokens==2.4.1
- astunparse==1.6.3
- async-lru==2.0.4
- attrs==24.2.0
- babel==2.16.0
- beautifulsoup4==4.12.3
- black==23.1.0
- bleach==6.1.0
- cachetools==5.4.0
- catalyst==22.4
- certifi==2025.1.31
- cffi==1.17.0
- cfgv==3.4.0
- click==8.1.7
- click-plugins==1.1.1
- cligj==0.7.2
- comm==0.2.2
- contextlib2==21.6.0
- contourpy==1.2.1
- csbdeep==0.7.4
- cycler==0.12.1
- debugpy==1.8.5
- decorator==5.1.1
- defusedxml==0.7.1
- dill==0.3.8
- distlib==0.3.8
- docker-pycreds==0.4.0
- ecos==2.0.14
- einops==0.6.1
- exceptiongroup==1.2.2
- executing==2.0.1
- fastjsonschema==2.20.0
- filelock==3.13.1
- flake8==6.0.0
- flake8-html==0.4.3
- flatbuffers==24.3.25
- fonttools==4.53.1
- fqdn==1.5.1
- fsspec==2024.6.1
- future==0.18.2
- gast==0.4.0
- genbadge==1.1.0
- geojson==3.0.0
- gitdb==4.0.11
- gitpython==3.1.43
- gmpy2==2.2.1
- google-auth==2.33.0
- google-auth-oauthlib==1.0.0
- google-pasta==0.2.0
- greenlet==3.0.3
- grpcio==1.65.4
- h5py==3.9.0
- huggingface-hub==0.24.5
- hydra-slayer==0.5.0
- identify==2.6.0
- idna==3.7
- imageio==2.31.1
- importlib-metadata==6.11.0
- ipykernel==6.29.5
- ipython==8.26.0
- ipython-genutils==0.2.0
- isoduration==20.11.0
- jax==0.4.18
- jedi==0.19.1
- joblib==1.4.2
- json5==0.9.25
- jsonpointer==3.0.0
- jsonschema==4.23.0
- jsonschema-specifications==2023.12.1
- jupyter-client==8.6.2
- jupyter-core==5.7.2
- jupyter-events==0.10.0
- jupyter-lsp==2.2.5
- jupyter-server==2.14.2
- jupyter-server-terminals==0.5.3
- jupyterlab==4.0.2
- jupyterlab-pygments==0.3.0
- jupyterlab-server==2.27.3
- kaleido==0.2.1
- keras==2.12.0
- kiwisolver==1.4.5
- lazy-loader==0.4
- libclang==18.1.1
- llvmlite==0.43.0
- loguru==0.7.2
- mako==1.2.4
- markdown==3.6
- matplotlib==3.7.1
- matplotlib-inline==0.1.7
- mccabe==0.7.0
- mistune==3.0.2
- ml-dtypes==0.4.0
- mypy-extensions==1.0.0
- natsort==8.4.0
- nbclient==0.10.0
- nbconvert==7.16.4
- nbformat==5.10.4
- nest-asyncio==1.6.0
- networkx==3.3
- nodeenv==1.9.1
- notebook-shim==0.2.4
- numba==0.60.0
- numexpr==2.10.1
- numpy==1.23.5
- nvidia-cublas-cu11==11.11.3.6
- nvidia-cublas-cu12==12.4.5.8
- nvidia-cuda-cupti-cu12==12.4.127
- nvidia-cuda-nvrtc-cu11==11.7.99
- nvidia-cuda-nvrtc-cu12==12.4.127
- nvidia-cuda-runtime-cu11==11.7.99
- nvidia-cuda-runtime-cu12==12.4.127
- nvidia-cudnn-cu11==9.3.0.75
- nvidia-cudnn-cu12==9.1.0.70
- nvidia-cufft-cu11==10.9.0.58
- nvidia-cufft-cu12==11.2.1.3
- nvidia-curand-cu11==10.3.0.86
- nvidia-curand-cu12==10.3.5.147
- nvidia-cusolver-cu11==11.4.1.48
- nvidia-cusolver-cu12==11.6.1.9
- nvidia-cusparse-cu11==11.7.5.86
- nvidia-cusparse-cu12==12.3.1.170
- nvidia-cusparselt-cu12==0.6.2
- nvidia-ml-py==11.495.46
- nvidia-nccl-cu11==2.21.5
- nvidia-nccl-cu12==2.21.5
- nvidia-nvjitlink-cu12==12.4.127
- nvidia-nvtx-cu12==12.4.127
- oauthlib==3.2.2
- opencv-python-headless==4.5.4.58
- openslide-python==1.1.2
- opt-einsum==3.3.0
- osqp==0.6.7.post1
- overrides==7.7.0
- packaging==24.1
- pandarallel==1.6.5
- pandas==1.5.3
- pandocfilters==1.5.1
- parso==0.8.4
- pathspec==0.12.1
- pathtools==0.1.2
- pexpect==4.9.0
- pillow==9.2.0
- platformdirs==4.2.2
- pre-commit==3.0.3
- prometheus-client==0.20.0
- prompt-toolkit==3.0.47
- protobuf==4.25.4
- psutil==6.0.0
- ptyprocess==0.7.0
- pure-eval==0.2.3
- pyasn1==0.6.0
- pyasn1-modules==0.4.0
- pycodestyle==2.10.0
- pycparser==2.22
- pydantic==1.10.4
- pyflakes==3.0.1
- pygments==2.18.0
- pyjwt==2.6.0
- pyparsing==3.1.2
- pysocks==1.7.1
- python-dateutil==2.9.0.post0
- python-json-logger==2.0.7
- pytz==2024.1
- pywavelets==1.6.0
- pyyaml==6.0
- pyzmq==26.1.0
- qdldl==0.1.7.post4
- qudida==0.0.4
- rasterio==1.3.5.post1
- referencing==0.35.1
- regex==2024.7.24
- requests==2.32.3
- requests-oauthlib==2.0.0
- rfc3339-validator==0.1.4
- rfc3986-validator==0.1.1
- rpds-py==0.20.0
- rsa==4.9
- safetensors==0.4.4
- schema==0.7.5
- scikit-image==0.19.3
- scikit-learn==1.2.1
- scikit-survival==0.21.0
- scipy==1.8.1
- seaborn==0.12.2
- send2trash==1.8.3
- sentry-sdk==2.12.0
- setproctitle==1.3.3
- shapely==1.8.5.post1
- simpleitk==2.2.1
- six==1.16.0
- smmap==5.0.1
- sniffio==1.3.1
- snuggs==1.4.7
- soupsieve==2.5
- sqlalchemy==2.0.17
- stack-data==0.6.3
- stardist==0.8.5
- sympy==1.13.1
- tabulate==0.9.0
- tensorboard==2.13.0
- tensorboard-data-server==0.7.2
- tensorboardx==2.6.2.2
- tensorflow-estimator==2.13.0
- tensorflow-io-gcs-filesystem==0.37.1
- termcolor==2.4.0
- terminado==0.18.1
- threadpoolctl==3.5.0
- tifffile==2024.7.24
- timm==1.0.8
- tinycss2==1.3.0
- tokenizers==0.19.1
- tomli==2.0.1
- torchinfo==1.8.0
- torchmetrics==0.11.4
- torchvision==0.20.1
- tornado==6.4.1
- tqdm==4.65.0
- traitlets==5.14.3
- transformers==4.44.0
- types-python-dateutil==2.9.0.20240316
- typing-extensions==4.8.0
- ujson==5.8.0
- uri-template==1.3.0
- urllib3==2.3.0
- virtualenv==20.26.3
- wandb==0.15.4
- wcwidth==0.2.13
- webcolors==24.6.0
- webencodings==0.5.1
- websocket-client==1.8.0
- werkzeug==3.0.3
- wrapt==1.14.1
- zipp==3.19.2
prefix: ~/.conda/envs/hne2cell