Upload cellvit_rv3.yml
Browse files- cellvit_rv3.yml +371 -0
cellvit_rv3.yml
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| 1 |
+
name: cellvit_rv3
|
| 2 |
+
channels:
|
| 3 |
+
- pytorch
|
| 4 |
+
- nvidia
|
| 5 |
+
- conda-forge
|
| 6 |
+
- defaults
|
| 7 |
+
dependencies:
|
| 8 |
+
- _libgcc_mutex=0.1=conda_forge
|
| 9 |
+
- _openmp_mutex=4.5=2_gnu
|
| 10 |
+
- blas=1.0=mkl
|
| 11 |
+
- brotli-python=1.0.9=py310h6a678d5_9
|
| 12 |
+
- bzip2=1.0.8=h7f98852_4
|
| 13 |
+
- ca-certificates=2025.2.25=h06a4308_0
|
| 14 |
+
- cairo=1.16.0=ha61ee94_1014
|
| 15 |
+
- charset-normalizer=3.3.2=pyhd3eb1b0_0
|
| 16 |
+
- cpython=3.10.17=py310hd8ed1ab_0
|
| 17 |
+
- cuda-cudart=12.4.127=0
|
| 18 |
+
- cuda-cupti=12.4.127=0
|
| 19 |
+
- cuda-libraries=12.4.1=0
|
| 20 |
+
- cuda-nvrtc=12.4.127=0
|
| 21 |
+
- cuda-nvtx=12.4.127=0
|
| 22 |
+
- cuda-opencl=12.4.127=0
|
| 23 |
+
- cuda-runtime=12.4.1=0
|
| 24 |
+
- cudatoolkit=11.8.0=h6a678d5_0
|
| 25 |
+
- expat=2.5.0=h27087fc_0
|
| 26 |
+
- ffmpeg=4.3=hf484d3e_0
|
| 27 |
+
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
|
| 28 |
+
- font-ttf-inconsolata=3.000=h77eed37_0
|
| 29 |
+
- font-ttf-source-code-pro=2.038=h77eed37_0
|
| 30 |
+
- font-ttf-ubuntu=0.83=hab24e00_0
|
| 31 |
+
- fontconfig=2.14.1=hc2a2eb6_0
|
| 32 |
+
- fonts-conda-ecosystem=1=0
|
| 33 |
+
- fonts-conda-forge=1=0
|
| 34 |
+
- freetype=2.12.1=hca18f0e_0
|
| 35 |
+
- gdk-pixbuf=2.42.8=hff1cb4f_1
|
| 36 |
+
- gettext=0.21.1=h27087fc_0
|
| 37 |
+
- giflib=5.2.2=h5eee18b_0
|
| 38 |
+
- glib=2.74.1=h6239696_1
|
| 39 |
+
- glib-tools=2.74.1=h6239696_1
|
| 40 |
+
- gmp=6.3.0=h6a678d5_0
|
| 41 |
+
- gnutls=3.6.15=he1e5248_0
|
| 42 |
+
- icu=70.1=h27087fc_0
|
| 43 |
+
- intel-openmp=2023.1.0=hdb19cb5_46306
|
| 44 |
+
- jinja2=3.1.6=pyhd8ed1ab_0
|
| 45 |
+
- jpeg=9e=h166bdaf_2
|
| 46 |
+
- lame=3.100=h7b6447c_0
|
| 47 |
+
- lcms2=2.14=h6ed2654_0
|
| 48 |
+
- ld_impl_linux-64=2.39=hc81fddc_0
|
| 49 |
+
- lerc=4.0.0=h27087fc_0
|
| 50 |
+
- libcublas=12.4.5.8=0
|
| 51 |
+
- libcufft=11.2.1.3=0
|
| 52 |
+
- libcufile=1.9.1.3=0
|
| 53 |
+
- libcurand=10.3.5.147=0
|
| 54 |
+
- libcusolver=11.6.1.9=0
|
| 55 |
+
- libcusparse=12.3.1.170=0
|
| 56 |
+
- libdeflate=1.14=h166bdaf_0
|
| 57 |
+
- libffi=3.4.2=h7f98852_5
|
| 58 |
+
- libgcc-ng=12.2.0=h65d4601_19
|
| 59 |
+
- libglib=2.74.1=h606061b_1
|
| 60 |
+
- libgomp=12.2.0=h65d4601_19
|
| 61 |
+
- libiconv=1.17=h166bdaf_0
|
| 62 |
+
- libidn2=2.3.4=h5eee18b_0
|
| 63 |
+
- libjpeg-turbo=2.0.0=h9bf148f_0
|
| 64 |
+
- libnpp=12.2.5.30=0
|
| 65 |
+
- libnsl=2.0.0=h7f98852_0
|
| 66 |
+
- libnvfatbin=12.4.127=0
|
| 67 |
+
- libnvjitlink=12.4.127=0
|
| 68 |
+
- libnvjpeg=12.3.1.117=0
|
| 69 |
+
- libpng=1.6.38=h753d276_0
|
| 70 |
+
- libsqlite=3.40.0=h753d276_0
|
| 71 |
+
- libstdcxx-ng=12.2.0=h46fd767_19
|
| 72 |
+
- libtasn1=4.19.0=h5eee18b_0
|
| 73 |
+
- libtiff=4.4.0=h55922b4_4
|
| 74 |
+
- libunistring=0.9.10=h27cfd23_0
|
| 75 |
+
- libuuid=2.32.1=h7f98852_1000
|
| 76 |
+
- libwebp=1.2.4=h11a3e52_1
|
| 77 |
+
- libwebp-base=1.2.4=h166bdaf_0
|
| 78 |
+
- libxcb=1.13=h7f98852_1004
|
| 79 |
+
- libxml2=2.10.3=h7463322_0
|
| 80 |
+
- libzlib=1.2.13=h166bdaf_4
|
| 81 |
+
- llvm-openmp=14.0.6=h9e868ea_0
|
| 82 |
+
- markupsafe=2.1.5=py310h2372a71_0
|
| 83 |
+
- mkl=2023.1.0=h213fc3f_46344
|
| 84 |
+
- mkl-service=2.4.0=py310h5eee18b_2
|
| 85 |
+
- mkl_fft=1.3.11=py310h5eee18b_0
|
| 86 |
+
- mkl_random=1.2.8=py310h1128e8f_0
|
| 87 |
+
- mpc=1.3.1=h5eee18b_0
|
| 88 |
+
- mpfr=4.2.1=h5eee18b_0
|
| 89 |
+
- mpmath=1.3.0=pyhd8ed1ab_1
|
| 90 |
+
- ncurses=6.3=h27087fc_1
|
| 91 |
+
- nettle=3.7.3=hbbd107a_1
|
| 92 |
+
- openh264=2.1.1=h4ff587b_0
|
| 93 |
+
- openjpeg=2.5.0=h7d73246_1
|
| 94 |
+
- openslide=3.4.1=h71beb9a_5
|
| 95 |
+
- openssl=3.0.16=h5eee18b_0
|
| 96 |
+
- pcre2=10.40=hc3806b6_0
|
| 97 |
+
- pip=22.3.1=pyhd8ed1ab_0
|
| 98 |
+
- pixman=0.40.0=h36c2ea0_0
|
| 99 |
+
- pthread-stubs=0.4=h36c2ea0_1001
|
| 100 |
+
- python=3.10.6=ha86cf86_0_cpython
|
| 101 |
+
- python_abi=3.10=2_cp310
|
| 102 |
+
- pytorch=2.5.1=py3.10_cuda12.4_cudnn9.1.0_0
|
| 103 |
+
- pytorch-cuda=12.4=hc786d27_7
|
| 104 |
+
- pytorch-mutex=1.0=cuda
|
| 105 |
+
- readline=8.1.2=h0f457ee_0
|
| 106 |
+
- setuptools=65.5.1=pyhd8ed1ab_0
|
| 107 |
+
- sqlite=3.40.0=h4ff8645_0
|
| 108 |
+
- tbb=2021.8.0=hdb19cb5_0
|
| 109 |
+
- tk=8.6.12=h27826a3_0
|
| 110 |
+
- torchtriton=3.1.0=py310
|
| 111 |
+
- tzdata=2022f=h191b570_0
|
| 112 |
+
- wheel=0.38.4=pyhd8ed1ab_0
|
| 113 |
+
- xorg-kbproto=1.0.7=h7f98852_1002
|
| 114 |
+
- xorg-libice=1.0.10=h7f98852_0
|
| 115 |
+
- xorg-libsm=1.2.3=hd9c2040_1000
|
| 116 |
+
- xorg-libx11=1.7.2=h7f98852_0
|
| 117 |
+
- xorg-libxau=1.0.9=h7f98852_0
|
| 118 |
+
- xorg-libxdmcp=1.1.3=h7f98852_0
|
| 119 |
+
- xorg-libxext=1.3.4=h7f98852_1
|
| 120 |
+
- xorg-libxrender=0.9.10=h7f98852_1003
|
| 121 |
+
- xorg-renderproto=0.11.1=h7f98852_1002
|
| 122 |
+
- xorg-xextproto=7.3.0=h7f98852_1002
|
| 123 |
+
- xorg-xproto=7.0.31=h7f98852_1007
|
| 124 |
+
- xz=5.2.6=h166bdaf_0
|
| 125 |
+
- yaml=0.2.5=h7b6447c_0
|
| 126 |
+
- zlib=1.2.13=h166bdaf_4
|
| 127 |
+
- zstd=1.5.2=h6239696_4
|
| 128 |
+
- pip:
|
| 129 |
+
- absl-py==2.1.0
|
| 130 |
+
- accelerate==0.33.0
|
| 131 |
+
- affine==2.4.0
|
| 132 |
+
- albumentations==1.3.0
|
| 133 |
+
- anyio==4.4.0
|
| 134 |
+
- appdirs==1.4.4
|
| 135 |
+
- argon2-cffi==23.1.0
|
| 136 |
+
- argon2-cffi-bindings==21.2.0
|
| 137 |
+
- arrow==1.3.0
|
| 138 |
+
- asttokens==2.4.1
|
| 139 |
+
- astunparse==1.6.3
|
| 140 |
+
- async-lru==2.0.4
|
| 141 |
+
- attrs==24.2.0
|
| 142 |
+
- babel==2.16.0
|
| 143 |
+
- beautifulsoup4==4.12.3
|
| 144 |
+
- black==23.1.0
|
| 145 |
+
- bleach==6.1.0
|
| 146 |
+
- cachetools==5.4.0
|
| 147 |
+
- catalyst==22.4
|
| 148 |
+
- certifi==2025.1.31
|
| 149 |
+
- cffi==1.17.0
|
| 150 |
+
- cfgv==3.4.0
|
| 151 |
+
- click==8.1.7
|
| 152 |
+
- click-plugins==1.1.1
|
| 153 |
+
- cligj==0.7.2
|
| 154 |
+
- comm==0.2.2
|
| 155 |
+
- contextlib2==21.6.0
|
| 156 |
+
- contourpy==1.2.1
|
| 157 |
+
- csbdeep==0.7.4
|
| 158 |
+
- cycler==0.12.1
|
| 159 |
+
- debugpy==1.8.5
|
| 160 |
+
- decorator==5.1.1
|
| 161 |
+
- defusedxml==0.7.1
|
| 162 |
+
- dill==0.3.8
|
| 163 |
+
- distlib==0.3.8
|
| 164 |
+
- docker-pycreds==0.4.0
|
| 165 |
+
- ecos==2.0.14
|
| 166 |
+
- einops==0.6.1
|
| 167 |
+
- exceptiongroup==1.2.2
|
| 168 |
+
- executing==2.0.1
|
| 169 |
+
- fastjsonschema==2.20.0
|
| 170 |
+
- filelock==3.13.1
|
| 171 |
+
- flake8==6.0.0
|
| 172 |
+
- flake8-html==0.4.3
|
| 173 |
+
- flatbuffers==24.3.25
|
| 174 |
+
- fonttools==4.53.1
|
| 175 |
+
- fqdn==1.5.1
|
| 176 |
+
- fsspec==2024.6.1
|
| 177 |
+
- future==0.18.2
|
| 178 |
+
- gast==0.4.0
|
| 179 |
+
- genbadge==1.1.0
|
| 180 |
+
- geojson==3.0.0
|
| 181 |
+
- gitdb==4.0.11
|
| 182 |
+
- gitpython==3.1.43
|
| 183 |
+
- gmpy2==2.2.1
|
| 184 |
+
- google-auth==2.33.0
|
| 185 |
+
- google-auth-oauthlib==1.0.0
|
| 186 |
+
- google-pasta==0.2.0
|
| 187 |
+
- greenlet==3.0.3
|
| 188 |
+
- grpcio==1.65.4
|
| 189 |
+
- h5py==3.9.0
|
| 190 |
+
- huggingface-hub==0.24.5
|
| 191 |
+
- hydra-slayer==0.5.0
|
| 192 |
+
- identify==2.6.0
|
| 193 |
+
- idna==3.7
|
| 194 |
+
- imageio==2.31.1
|
| 195 |
+
- importlib-metadata==6.11.0
|
| 196 |
+
- ipykernel==6.29.5
|
| 197 |
+
- ipython==8.26.0
|
| 198 |
+
- ipython-genutils==0.2.0
|
| 199 |
+
- isoduration==20.11.0
|
| 200 |
+
- jax==0.4.18
|
| 201 |
+
- jedi==0.19.1
|
| 202 |
+
- joblib==1.4.2
|
| 203 |
+
- json5==0.9.25
|
| 204 |
+
- jsonpointer==3.0.0
|
| 205 |
+
- jsonschema==4.23.0
|
| 206 |
+
- jsonschema-specifications==2023.12.1
|
| 207 |
+
- jupyter-client==8.6.2
|
| 208 |
+
- jupyter-core==5.7.2
|
| 209 |
+
- jupyter-events==0.10.0
|
| 210 |
+
- jupyter-lsp==2.2.5
|
| 211 |
+
- jupyter-server==2.14.2
|
| 212 |
+
- jupyter-server-terminals==0.5.3
|
| 213 |
+
- jupyterlab==4.0.2
|
| 214 |
+
- jupyterlab-pygments==0.3.0
|
| 215 |
+
- jupyterlab-server==2.27.3
|
| 216 |
+
- kaleido==0.2.1
|
| 217 |
+
- keras==2.12.0
|
| 218 |
+
- kiwisolver==1.4.5
|
| 219 |
+
- lazy-loader==0.4
|
| 220 |
+
- libclang==18.1.1
|
| 221 |
+
- llvmlite==0.43.0
|
| 222 |
+
- loguru==0.7.2
|
| 223 |
+
- mako==1.2.4
|
| 224 |
+
- markdown==3.6
|
| 225 |
+
- matplotlib==3.7.1
|
| 226 |
+
- matplotlib-inline==0.1.7
|
| 227 |
+
- mccabe==0.7.0
|
| 228 |
+
- mistune==3.0.2
|
| 229 |
+
- ml-dtypes==0.4.0
|
| 230 |
+
- mypy-extensions==1.0.0
|
| 231 |
+
- natsort==8.4.0
|
| 232 |
+
- nbclient==0.10.0
|
| 233 |
+
- nbconvert==7.16.4
|
| 234 |
+
- nbformat==5.10.4
|
| 235 |
+
- nest-asyncio==1.6.0
|
| 236 |
+
- networkx==3.3
|
| 237 |
+
- nodeenv==1.9.1
|
| 238 |
+
- notebook-shim==0.2.4
|
| 239 |
+
- numba==0.60.0
|
| 240 |
+
- numexpr==2.10.1
|
| 241 |
+
- numpy==1.23.5
|
| 242 |
+
- nvidia-cublas-cu11==11.11.3.6
|
| 243 |
+
- nvidia-cublas-cu12==12.4.5.8
|
| 244 |
+
- nvidia-cuda-cupti-cu12==12.4.127
|
| 245 |
+
- nvidia-cuda-nvrtc-cu11==11.7.99
|
| 246 |
+
- nvidia-cuda-nvrtc-cu12==12.4.127
|
| 247 |
+
- nvidia-cuda-runtime-cu11==11.7.99
|
| 248 |
+
- nvidia-cuda-runtime-cu12==12.4.127
|
| 249 |
+
- nvidia-cudnn-cu11==9.3.0.75
|
| 250 |
+
- nvidia-cudnn-cu12==9.1.0.70
|
| 251 |
+
- nvidia-cufft-cu11==10.9.0.58
|
| 252 |
+
- nvidia-cufft-cu12==11.2.1.3
|
| 253 |
+
- nvidia-curand-cu11==10.3.0.86
|
| 254 |
+
- nvidia-curand-cu12==10.3.5.147
|
| 255 |
+
- nvidia-cusolver-cu11==11.4.1.48
|
| 256 |
+
- nvidia-cusolver-cu12==11.6.1.9
|
| 257 |
+
- nvidia-cusparse-cu11==11.7.5.86
|
| 258 |
+
- nvidia-cusparse-cu12==12.3.1.170
|
| 259 |
+
- nvidia-cusparselt-cu12==0.6.2
|
| 260 |
+
- nvidia-ml-py==11.495.46
|
| 261 |
+
- nvidia-nccl-cu11==2.21.5
|
| 262 |
+
- nvidia-nccl-cu12==2.21.5
|
| 263 |
+
- nvidia-nvjitlink-cu12==12.4.127
|
| 264 |
+
- nvidia-nvtx-cu12==12.4.127
|
| 265 |
+
- oauthlib==3.2.2
|
| 266 |
+
- opencv-python-headless==4.5.4.58
|
| 267 |
+
- openslide-python==1.1.2
|
| 268 |
+
- opt-einsum==3.3.0
|
| 269 |
+
- osqp==0.6.7.post1
|
| 270 |
+
- overrides==7.7.0
|
| 271 |
+
- packaging==24.1
|
| 272 |
+
- pandarallel==1.6.5
|
| 273 |
+
- pandas==1.5.3
|
| 274 |
+
- pandocfilters==1.5.1
|
| 275 |
+
- parso==0.8.4
|
| 276 |
+
- pathspec==0.12.1
|
| 277 |
+
- pathtools==0.1.2
|
| 278 |
+
- pexpect==4.9.0
|
| 279 |
+
- pillow==9.2.0
|
| 280 |
+
- platformdirs==4.2.2
|
| 281 |
+
- pre-commit==3.0.3
|
| 282 |
+
- prometheus-client==0.20.0
|
| 283 |
+
- prompt-toolkit==3.0.47
|
| 284 |
+
- protobuf==4.25.4
|
| 285 |
+
- psutil==6.0.0
|
| 286 |
+
- ptyprocess==0.7.0
|
| 287 |
+
- pure-eval==0.2.3
|
| 288 |
+
- pyasn1==0.6.0
|
| 289 |
+
- pyasn1-modules==0.4.0
|
| 290 |
+
- pycodestyle==2.10.0
|
| 291 |
+
- pycparser==2.22
|
| 292 |
+
- pydantic==1.10.4
|
| 293 |
+
- pyflakes==3.0.1
|
| 294 |
+
- pygments==2.18.0
|
| 295 |
+
- pyjwt==2.6.0
|
| 296 |
+
- pyparsing==3.1.2
|
| 297 |
+
- pysocks==1.7.1
|
| 298 |
+
- python-dateutil==2.9.0.post0
|
| 299 |
+
- python-json-logger==2.0.7
|
| 300 |
+
- pytz==2024.1
|
| 301 |
+
- pywavelets==1.6.0
|
| 302 |
+
- pyyaml==6.0
|
| 303 |
+
- pyzmq==26.1.0
|
| 304 |
+
- qdldl==0.1.7.post4
|
| 305 |
+
- qudida==0.0.4
|
| 306 |
+
- rasterio==1.3.5.post1
|
| 307 |
+
- referencing==0.35.1
|
| 308 |
+
- regex==2024.7.24
|
| 309 |
+
- requests==2.32.3
|
| 310 |
+
- requests-oauthlib==2.0.0
|
| 311 |
+
- rfc3339-validator==0.1.4
|
| 312 |
+
- rfc3986-validator==0.1.1
|
| 313 |
+
- rpds-py==0.20.0
|
| 314 |
+
- rsa==4.9
|
| 315 |
+
- safetensors==0.4.4
|
| 316 |
+
- schema==0.7.5
|
| 317 |
+
- scikit-image==0.19.3
|
| 318 |
+
- scikit-learn==1.2.1
|
| 319 |
+
- scikit-survival==0.21.0
|
| 320 |
+
- scipy==1.8.1
|
| 321 |
+
- seaborn==0.12.2
|
| 322 |
+
- send2trash==1.8.3
|
| 323 |
+
- sentry-sdk==2.12.0
|
| 324 |
+
- setproctitle==1.3.3
|
| 325 |
+
- shapely==1.8.5.post1
|
| 326 |
+
- simpleitk==2.2.1
|
| 327 |
+
- six==1.16.0
|
| 328 |
+
- smmap==5.0.1
|
| 329 |
+
- sniffio==1.3.1
|
| 330 |
+
- snuggs==1.4.7
|
| 331 |
+
- soupsieve==2.5
|
| 332 |
+
- sqlalchemy==2.0.17
|
| 333 |
+
- stack-data==0.6.3
|
| 334 |
+
- stardist==0.8.5
|
| 335 |
+
- sympy==1.13.1
|
| 336 |
+
- tabulate==0.9.0
|
| 337 |
+
- tensorboard==2.13.0
|
| 338 |
+
- tensorboard-data-server==0.7.2
|
| 339 |
+
- tensorboardx==2.6.2.2
|
| 340 |
+
- tensorflow-estimator==2.13.0
|
| 341 |
+
- tensorflow-io-gcs-filesystem==0.37.1
|
| 342 |
+
- termcolor==2.4.0
|
| 343 |
+
- terminado==0.18.1
|
| 344 |
+
- threadpoolctl==3.5.0
|
| 345 |
+
- tifffile==2024.7.24
|
| 346 |
+
- timm==1.0.8
|
| 347 |
+
- tinycss2==1.3.0
|
| 348 |
+
- tokenizers==0.19.1
|
| 349 |
+
- tomli==2.0.1
|
| 350 |
+
- torchinfo==1.8.0
|
| 351 |
+
- torchmetrics==0.11.4
|
| 352 |
+
- torchvision==0.20.1
|
| 353 |
+
- tornado==6.4.1
|
| 354 |
+
- tqdm==4.65.0
|
| 355 |
+
- traitlets==5.14.3
|
| 356 |
+
- transformers==4.44.0
|
| 357 |
+
- types-python-dateutil==2.9.0.20240316
|
| 358 |
+
- typing-extensions==4.8.0
|
| 359 |
+
- ujson==5.8.0
|
| 360 |
+
- uri-template==1.3.0
|
| 361 |
+
- urllib3==2.3.0
|
| 362 |
+
- virtualenv==20.26.3
|
| 363 |
+
- wandb==0.15.4
|
| 364 |
+
- wcwidth==0.2.13
|
| 365 |
+
- webcolors==24.6.0
|
| 366 |
+
- webencodings==0.5.1
|
| 367 |
+
- websocket-client==1.8.0
|
| 368 |
+
- werkzeug==3.0.3
|
| 369 |
+
- wrapt==1.14.1
|
| 370 |
+
- zipp==3.19.2
|
| 371 |
+
prefix: /home01/k187a01/.conda/envs/cellvit_rv3
|