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cellvit_rv3.yml ADDED
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1
+ name: cellvit_rv3
2
+ channels:
3
+ - pytorch
4
+ - nvidia
5
+ - conda-forge
6
+ - defaults
7
+ dependencies:
8
+ - _libgcc_mutex=0.1=conda_forge
9
+ - _openmp_mutex=4.5=2_gnu
10
+ - blas=1.0=mkl
11
+ - brotli-python=1.0.9=py310h6a678d5_9
12
+ - bzip2=1.0.8=h7f98852_4
13
+ - ca-certificates=2025.2.25=h06a4308_0
14
+ - cairo=1.16.0=ha61ee94_1014
15
+ - charset-normalizer=3.3.2=pyhd3eb1b0_0
16
+ - cpython=3.10.17=py310hd8ed1ab_0
17
+ - cuda-cudart=12.4.127=0
18
+ - cuda-cupti=12.4.127=0
19
+ - cuda-libraries=12.4.1=0
20
+ - cuda-nvrtc=12.4.127=0
21
+ - cuda-nvtx=12.4.127=0
22
+ - cuda-opencl=12.4.127=0
23
+ - cuda-runtime=12.4.1=0
24
+ - cudatoolkit=11.8.0=h6a678d5_0
25
+ - expat=2.5.0=h27087fc_0
26
+ - ffmpeg=4.3=hf484d3e_0
27
+ - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
28
+ - font-ttf-inconsolata=3.000=h77eed37_0
29
+ - font-ttf-source-code-pro=2.038=h77eed37_0
30
+ - font-ttf-ubuntu=0.83=hab24e00_0
31
+ - fontconfig=2.14.1=hc2a2eb6_0
32
+ - fonts-conda-ecosystem=1=0
33
+ - fonts-conda-forge=1=0
34
+ - freetype=2.12.1=hca18f0e_0
35
+ - gdk-pixbuf=2.42.8=hff1cb4f_1
36
+ - gettext=0.21.1=h27087fc_0
37
+ - giflib=5.2.2=h5eee18b_0
38
+ - glib=2.74.1=h6239696_1
39
+ - glib-tools=2.74.1=h6239696_1
40
+ - gmp=6.3.0=h6a678d5_0
41
+ - gnutls=3.6.15=he1e5248_0
42
+ - icu=70.1=h27087fc_0
43
+ - intel-openmp=2023.1.0=hdb19cb5_46306
44
+ - jinja2=3.1.6=pyhd8ed1ab_0
45
+ - jpeg=9e=h166bdaf_2
46
+ - lame=3.100=h7b6447c_0
47
+ - lcms2=2.14=h6ed2654_0
48
+ - ld_impl_linux-64=2.39=hc81fddc_0
49
+ - lerc=4.0.0=h27087fc_0
50
+ - libcublas=12.4.5.8=0
51
+ - libcufft=11.2.1.3=0
52
+ - libcufile=1.9.1.3=0
53
+ - libcurand=10.3.5.147=0
54
+ - libcusolver=11.6.1.9=0
55
+ - libcusparse=12.3.1.170=0
56
+ - libdeflate=1.14=h166bdaf_0
57
+ - libffi=3.4.2=h7f98852_5
58
+ - libgcc-ng=12.2.0=h65d4601_19
59
+ - libglib=2.74.1=h606061b_1
60
+ - libgomp=12.2.0=h65d4601_19
61
+ - libiconv=1.17=h166bdaf_0
62
+ - libidn2=2.3.4=h5eee18b_0
63
+ - libjpeg-turbo=2.0.0=h9bf148f_0
64
+ - libnpp=12.2.5.30=0
65
+ - libnsl=2.0.0=h7f98852_0
66
+ - libnvfatbin=12.4.127=0
67
+ - libnvjitlink=12.4.127=0
68
+ - libnvjpeg=12.3.1.117=0
69
+ - libpng=1.6.38=h753d276_0
70
+ - libsqlite=3.40.0=h753d276_0
71
+ - libstdcxx-ng=12.2.0=h46fd767_19
72
+ - libtasn1=4.19.0=h5eee18b_0
73
+ - libtiff=4.4.0=h55922b4_4
74
+ - libunistring=0.9.10=h27cfd23_0
75
+ - libuuid=2.32.1=h7f98852_1000
76
+ - libwebp=1.2.4=h11a3e52_1
77
+ - libwebp-base=1.2.4=h166bdaf_0
78
+ - libxcb=1.13=h7f98852_1004
79
+ - libxml2=2.10.3=h7463322_0
80
+ - libzlib=1.2.13=h166bdaf_4
81
+ - llvm-openmp=14.0.6=h9e868ea_0
82
+ - markupsafe=2.1.5=py310h2372a71_0
83
+ - mkl=2023.1.0=h213fc3f_46344
84
+ - mkl-service=2.4.0=py310h5eee18b_2
85
+ - mkl_fft=1.3.11=py310h5eee18b_0
86
+ - mkl_random=1.2.8=py310h1128e8f_0
87
+ - mpc=1.3.1=h5eee18b_0
88
+ - mpfr=4.2.1=h5eee18b_0
89
+ - mpmath=1.3.0=pyhd8ed1ab_1
90
+ - ncurses=6.3=h27087fc_1
91
+ - nettle=3.7.3=hbbd107a_1
92
+ - openh264=2.1.1=h4ff587b_0
93
+ - openjpeg=2.5.0=h7d73246_1
94
+ - openslide=3.4.1=h71beb9a_5
95
+ - openssl=3.0.16=h5eee18b_0
96
+ - pcre2=10.40=hc3806b6_0
97
+ - pip=22.3.1=pyhd8ed1ab_0
98
+ - pixman=0.40.0=h36c2ea0_0
99
+ - pthread-stubs=0.4=h36c2ea0_1001
100
+ - python=3.10.6=ha86cf86_0_cpython
101
+ - python_abi=3.10=2_cp310
102
+ - pytorch=2.5.1=py3.10_cuda12.4_cudnn9.1.0_0
103
+ - pytorch-cuda=12.4=hc786d27_7
104
+ - pytorch-mutex=1.0=cuda
105
+ - readline=8.1.2=h0f457ee_0
106
+ - setuptools=65.5.1=pyhd8ed1ab_0
107
+ - sqlite=3.40.0=h4ff8645_0
108
+ - tbb=2021.8.0=hdb19cb5_0
109
+ - tk=8.6.12=h27826a3_0
110
+ - torchtriton=3.1.0=py310
111
+ - tzdata=2022f=h191b570_0
112
+ - wheel=0.38.4=pyhd8ed1ab_0
113
+ - xorg-kbproto=1.0.7=h7f98852_1002
114
+ - xorg-libice=1.0.10=h7f98852_0
115
+ - xorg-libsm=1.2.3=hd9c2040_1000
116
+ - xorg-libx11=1.7.2=h7f98852_0
117
+ - xorg-libxau=1.0.9=h7f98852_0
118
+ - xorg-libxdmcp=1.1.3=h7f98852_0
119
+ - xorg-libxext=1.3.4=h7f98852_1
120
+ - xorg-libxrender=0.9.10=h7f98852_1003
121
+ - xorg-renderproto=0.11.1=h7f98852_1002
122
+ - xorg-xextproto=7.3.0=h7f98852_1002
123
+ - xorg-xproto=7.0.31=h7f98852_1007
124
+ - xz=5.2.6=h166bdaf_0
125
+ - yaml=0.2.5=h7b6447c_0
126
+ - zlib=1.2.13=h166bdaf_4
127
+ - zstd=1.5.2=h6239696_4
128
+ - pip:
129
+ - absl-py==2.1.0
130
+ - accelerate==0.33.0
131
+ - affine==2.4.0
132
+ - albumentations==1.3.0
133
+ - anyio==4.4.0
134
+ - appdirs==1.4.4
135
+ - argon2-cffi==23.1.0
136
+ - argon2-cffi-bindings==21.2.0
137
+ - arrow==1.3.0
138
+ - asttokens==2.4.1
139
+ - astunparse==1.6.3
140
+ - async-lru==2.0.4
141
+ - attrs==24.2.0
142
+ - babel==2.16.0
143
+ - beautifulsoup4==4.12.3
144
+ - black==23.1.0
145
+ - bleach==6.1.0
146
+ - cachetools==5.4.0
147
+ - catalyst==22.4
148
+ - certifi==2025.1.31
149
+ - cffi==1.17.0
150
+ - cfgv==3.4.0
151
+ - click==8.1.7
152
+ - click-plugins==1.1.1
153
+ - cligj==0.7.2
154
+ - comm==0.2.2
155
+ - contextlib2==21.6.0
156
+ - contourpy==1.2.1
157
+ - csbdeep==0.7.4
158
+ - cycler==0.12.1
159
+ - debugpy==1.8.5
160
+ - decorator==5.1.1
161
+ - defusedxml==0.7.1
162
+ - dill==0.3.8
163
+ - distlib==0.3.8
164
+ - docker-pycreds==0.4.0
165
+ - ecos==2.0.14
166
+ - einops==0.6.1
167
+ - exceptiongroup==1.2.2
168
+ - executing==2.0.1
169
+ - fastjsonschema==2.20.0
170
+ - filelock==3.13.1
171
+ - flake8==6.0.0
172
+ - flake8-html==0.4.3
173
+ - flatbuffers==24.3.25
174
+ - fonttools==4.53.1
175
+ - fqdn==1.5.1
176
+ - fsspec==2024.6.1
177
+ - future==0.18.2
178
+ - gast==0.4.0
179
+ - genbadge==1.1.0
180
+ - geojson==3.0.0
181
+ - gitdb==4.0.11
182
+ - gitpython==3.1.43
183
+ - gmpy2==2.2.1
184
+ - google-auth==2.33.0
185
+ - google-auth-oauthlib==1.0.0
186
+ - google-pasta==0.2.0
187
+ - greenlet==3.0.3
188
+ - grpcio==1.65.4
189
+ - h5py==3.9.0
190
+ - huggingface-hub==0.24.5
191
+ - hydra-slayer==0.5.0
192
+ - identify==2.6.0
193
+ - idna==3.7
194
+ - imageio==2.31.1
195
+ - importlib-metadata==6.11.0
196
+ - ipykernel==6.29.5
197
+ - ipython==8.26.0
198
+ - ipython-genutils==0.2.0
199
+ - isoduration==20.11.0
200
+ - jax==0.4.18
201
+ - jedi==0.19.1
202
+ - joblib==1.4.2
203
+ - json5==0.9.25
204
+ - jsonpointer==3.0.0
205
+ - jsonschema==4.23.0
206
+ - jsonschema-specifications==2023.12.1
207
+ - jupyter-client==8.6.2
208
+ - jupyter-core==5.7.2
209
+ - jupyter-events==0.10.0
210
+ - jupyter-lsp==2.2.5
211
+ - jupyter-server==2.14.2
212
+ - jupyter-server-terminals==0.5.3
213
+ - jupyterlab==4.0.2
214
+ - jupyterlab-pygments==0.3.0
215
+ - jupyterlab-server==2.27.3
216
+ - kaleido==0.2.1
217
+ - keras==2.12.0
218
+ - kiwisolver==1.4.5
219
+ - lazy-loader==0.4
220
+ - libclang==18.1.1
221
+ - llvmlite==0.43.0
222
+ - loguru==0.7.2
223
+ - mako==1.2.4
224
+ - markdown==3.6
225
+ - matplotlib==3.7.1
226
+ - matplotlib-inline==0.1.7
227
+ - mccabe==0.7.0
228
+ - mistune==3.0.2
229
+ - ml-dtypes==0.4.0
230
+ - mypy-extensions==1.0.0
231
+ - natsort==8.4.0
232
+ - nbclient==0.10.0
233
+ - nbconvert==7.16.4
234
+ - nbformat==5.10.4
235
+ - nest-asyncio==1.6.0
236
+ - networkx==3.3
237
+ - nodeenv==1.9.1
238
+ - notebook-shim==0.2.4
239
+ - numba==0.60.0
240
+ - numexpr==2.10.1
241
+ - numpy==1.23.5
242
+ - nvidia-cublas-cu11==11.11.3.6
243
+ - nvidia-cublas-cu12==12.4.5.8
244
+ - nvidia-cuda-cupti-cu12==12.4.127
245
+ - nvidia-cuda-nvrtc-cu11==11.7.99
246
+ - nvidia-cuda-nvrtc-cu12==12.4.127
247
+ - nvidia-cuda-runtime-cu11==11.7.99
248
+ - nvidia-cuda-runtime-cu12==12.4.127
249
+ - nvidia-cudnn-cu11==9.3.0.75
250
+ - nvidia-cudnn-cu12==9.1.0.70
251
+ - nvidia-cufft-cu11==10.9.0.58
252
+ - nvidia-cufft-cu12==11.2.1.3
253
+ - nvidia-curand-cu11==10.3.0.86
254
+ - nvidia-curand-cu12==10.3.5.147
255
+ - nvidia-cusolver-cu11==11.4.1.48
256
+ - nvidia-cusolver-cu12==11.6.1.9
257
+ - nvidia-cusparse-cu11==11.7.5.86
258
+ - nvidia-cusparse-cu12==12.3.1.170
259
+ - nvidia-cusparselt-cu12==0.6.2
260
+ - nvidia-ml-py==11.495.46
261
+ - nvidia-nccl-cu11==2.21.5
262
+ - nvidia-nccl-cu12==2.21.5
263
+ - nvidia-nvjitlink-cu12==12.4.127
264
+ - nvidia-nvtx-cu12==12.4.127
265
+ - oauthlib==3.2.2
266
+ - opencv-python-headless==4.5.4.58
267
+ - openslide-python==1.1.2
268
+ - opt-einsum==3.3.0
269
+ - osqp==0.6.7.post1
270
+ - overrides==7.7.0
271
+ - packaging==24.1
272
+ - pandarallel==1.6.5
273
+ - pandas==1.5.3
274
+ - pandocfilters==1.5.1
275
+ - parso==0.8.4
276
+ - pathspec==0.12.1
277
+ - pathtools==0.1.2
278
+ - pexpect==4.9.0
279
+ - pillow==9.2.0
280
+ - platformdirs==4.2.2
281
+ - pre-commit==3.0.3
282
+ - prometheus-client==0.20.0
283
+ - prompt-toolkit==3.0.47
284
+ - protobuf==4.25.4
285
+ - psutil==6.0.0
286
+ - ptyprocess==0.7.0
287
+ - pure-eval==0.2.3
288
+ - pyasn1==0.6.0
289
+ - pyasn1-modules==0.4.0
290
+ - pycodestyle==2.10.0
291
+ - pycparser==2.22
292
+ - pydantic==1.10.4
293
+ - pyflakes==3.0.1
294
+ - pygments==2.18.0
295
+ - pyjwt==2.6.0
296
+ - pyparsing==3.1.2
297
+ - pysocks==1.7.1
298
+ - python-dateutil==2.9.0.post0
299
+ - python-json-logger==2.0.7
300
+ - pytz==2024.1
301
+ - pywavelets==1.6.0
302
+ - pyyaml==6.0
303
+ - pyzmq==26.1.0
304
+ - qdldl==0.1.7.post4
305
+ - qudida==0.0.4
306
+ - rasterio==1.3.5.post1
307
+ - referencing==0.35.1
308
+ - regex==2024.7.24
309
+ - requests==2.32.3
310
+ - requests-oauthlib==2.0.0
311
+ - rfc3339-validator==0.1.4
312
+ - rfc3986-validator==0.1.1
313
+ - rpds-py==0.20.0
314
+ - rsa==4.9
315
+ - safetensors==0.4.4
316
+ - schema==0.7.5
317
+ - scikit-image==0.19.3
318
+ - scikit-learn==1.2.1
319
+ - scikit-survival==0.21.0
320
+ - scipy==1.8.1
321
+ - seaborn==0.12.2
322
+ - send2trash==1.8.3
323
+ - sentry-sdk==2.12.0
324
+ - setproctitle==1.3.3
325
+ - shapely==1.8.5.post1
326
+ - simpleitk==2.2.1
327
+ - six==1.16.0
328
+ - smmap==5.0.1
329
+ - sniffio==1.3.1
330
+ - snuggs==1.4.7
331
+ - soupsieve==2.5
332
+ - sqlalchemy==2.0.17
333
+ - stack-data==0.6.3
334
+ - stardist==0.8.5
335
+ - sympy==1.13.1
336
+ - tabulate==0.9.0
337
+ - tensorboard==2.13.0
338
+ - tensorboard-data-server==0.7.2
339
+ - tensorboardx==2.6.2.2
340
+ - tensorflow-estimator==2.13.0
341
+ - tensorflow-io-gcs-filesystem==0.37.1
342
+ - termcolor==2.4.0
343
+ - terminado==0.18.1
344
+ - threadpoolctl==3.5.0
345
+ - tifffile==2024.7.24
346
+ - timm==1.0.8
347
+ - tinycss2==1.3.0
348
+ - tokenizers==0.19.1
349
+ - tomli==2.0.1
350
+ - torchinfo==1.8.0
351
+ - torchmetrics==0.11.4
352
+ - torchvision==0.20.1
353
+ - tornado==6.4.1
354
+ - tqdm==4.65.0
355
+ - traitlets==5.14.3
356
+ - transformers==4.44.0
357
+ - types-python-dateutil==2.9.0.20240316
358
+ - typing-extensions==4.8.0
359
+ - ujson==5.8.0
360
+ - uri-template==1.3.0
361
+ - urllib3==2.3.0
362
+ - virtualenv==20.26.3
363
+ - wandb==0.15.4
364
+ - wcwidth==0.2.13
365
+ - webcolors==24.6.0
366
+ - webencodings==0.5.1
367
+ - websocket-client==1.8.0
368
+ - werkzeug==3.0.3
369
+ - wrapt==1.14.1
370
+ - zipp==3.19.2
371
+ prefix: /home01/k187a01/.conda/envs/cellvit_rv3