print("Setup underway...") # All necessary imports from celery import Celery from utils import wait_for_result # Initialize Celery celery_app = Celery() print("Broker:", celery_app.conf.broker_url) print("Backend:", celery_app.conf.result_backend) print("") print("============================") print("1a. Product prediction - batch") # Set up a list of reactants to make predictions reactants_list = ["CCI.O=Cc1ccc([N+](=O)[O-])c(O)c1", "CCOc1cc(O)c(C=O)cc1OCC.OCCCBr", "C=CCc1cc(OCc2ccccc2)ccc1O.CCBr"] # Setup task kwargs kwargs = { "topn": 1, # Number of results per reactant "num_beams": 3, # Number of beams used for prediction. Must be >= topn "device": None, # Device used for predicting, either "cuda" or "cpu", None defaults to cuda if available "ckpt_forward": "Pistachio2025Q2-Forward", # Default forward model "vocab": "Pistachio2025Q2", # Vocab for default forward model # "ckpt_forward_path": "models/forward/Pistachio2025Q2-Forward.ckpt", # Can be used instead of ckpt_forward # "vocab_path": "vocab/Pistachio2025Q2.txt", # Can be used instead of vocab } # Send the product_prediction task with the reaction list and kwargs task = celery_app.send_task( "tasks.product_prediction", [reactants_list], kwargs=kwargs, queue="product_prediction", ) print("Task sent. Assigned task_id: {}".format(task.id)) # Use the task id to get the result. Increase timeout if needed. wait_for_result(celery_app, task.id, timeout=180) print("") print("============================") print("1b. Product prediction - top 3") # Set up a list of reactants to make predictions reactants_list = ["CCI.O=Cc1ccc([N+](=O)[O-])c(O)c1"] # Setup task kwargs kwargs = { "topn": 3, # Number of results per reactant "num_beams": 5, # Number of beams used for prediction. Must be >= topn "device": None, # Device used for predicting, either "cuda" or "cpu", None defaults to cuda if available "ckpt_forward": "Pistachio2025Q2-Forward", # Default forward model "vocab": "Pistachio2025Q2", # Vocab for default forward model # "ckpt_forward_path": "models/forward/Pistachio2025Q2-Forward.ckpt", # Can be used instead of ckpt_forward # "vocab_path": "vocab/Pistachio2025Q2.txt", # Can be used instead of vocab } # Send the product_prediction task with the reaction list and kwargs task = celery_app.send_task( "tasks.product_prediction", [reactants_list], kwargs=kwargs, queue="product_prediction", ) print("Task sent. Assigned task_id: {}".format(task.id)) # Use the task id to get the result. Increase timeout if needed. wait_for_result(celery_app, task.id, timeout=180) print("") print("============================") print("2. Retrosynthesis prediction") # Choose product for retrosynthesis prediction product = "C=CC(=C)C[Si](C)(C)C" # Setup task kwargs kwargs = { "topn": 15, # Number of results per reactant "num_beams": 15, # Number of beams used for prediction. Must be >= topn "fap": 0.6, # Forward likelihood acceptance probability (not length averaged) "fld": 0.2, # Forward likelihood delta required between the top2 forward prediction results "device": None, # Device used for predicting, either "cuda" or "cpu", None defaults to cuda if available "ckpt_forward": "Pistachio2025Q2-Forward", # Default forward model "ckpt_retro": "Pistachio2025Q2-Retro", # Default retrosynthesis model "vocab": "Pistachio2025Q2", # Vocab for default forward and retrosynthesis models # "ckpt_forward_path": "models/forward/Pistachio2025Q2-Forward.ckpt", # Can be used instead of ckpt_forward # "ckpt_retro_path": "models/retrosynthesis/Pistachio2025Q2-Retro.ckpt", # Can be used instead of ckpt_retro # "vocab_path": "vocab/Pistachio2025Q2.txt", # Can be used instead of vocab } # Send the retro_prediction task with the product and kwargs task = celery_app.send_task( "tasks.retro_prediction", [product], kwargs=kwargs, queue="retro_prediction", ) print("Task sent. Assigned task_id: {}".format(task.id)) # Use the task id to get the result. Increase timeout if needed. wait_for_result(celery_app, task.id, timeout=300) print("") print("============================") print("3. Retro tree prediction") # Choose product for retrosynthesis tree prediction product = "C1C(C[Si](C)(C)C)=CCC2C(=O)OC(=O)C12" #product = "Cc1cc2scnc2cc1N" #product = "CC(C)(C(=O)O)C1C=CC=C(C2CC2)C1=O" #product = "Nc1ccc2scnc2c1Br" # Setup task kwargs kwargs = { "topn": 15, # Number of results per reactant "num_beams": 15, # Number of beams used for prediction. Must be >= topn "fap": 0.6, # Forward likelihood acceptance probability (not length averaged) "fld": 0.2, # Forward likelihood delta required between the top2 forward prediction results "max_depth": 4, # Max depth of the retrosynthesis tree "beam_width": 6, # Max amount of nodes being expanded in each step "device": None, # Device used for predicting, either "cuda" or "cpu", None defaults to cuda if available "ckpt_forward": "Pistachio2025Q2-Forward", # Default forward model "ckpt_retro": "Pistachio2025Q2-Retro", # Default retrosynthesis model "vocab": "Pistachio2025Q2", # Vocab for default forward and retrosynthesis models # "ckpt_forward_path": "models/forward/Pistachio2025Q2-Forward.ckpt", # Can be used instead of ckpt_forward # "ckpt_retro_path": "models/retrosynthesis/Pistachio2025Q2-Retro.ckpt", # Can be used instead of ckpt_retro # "vocab_path": "vocab/Pistachio2025Q2.txt", # Can be used instead of vocab } # Send the retro_prediction_tree task with the product and kwargs task = celery_app.send_task( "tasks.retro_prediction_tree", [product], kwargs=kwargs, queue="retro_prediction", ) print("Task sent. Assigned task_id: {}".format(task.id)) # Use the task id to get the result. Increase timeout if needed. wait_for_result(celery_app, task.id, timeout=3000)