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Add files using upload-large-folder tool

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  1. .gitattributes +36 -0
  2. annotation/reference_labels.tsv +3 -0
  3. cellsearch/cell_embedding/__commits/__1776357350490_1776357499738_2b0ebe28422bafc9e42832211bd96bcc_22.wrt +0 -0
  4. cellsearch/cell_embedding/__fragments/__1776357350490_1776357499738_2b0ebe28422bafc9e42832211bd96bcc_22/__fragment_metadata.tdb +0 -0
  5. cellsearch/cell_embedding/__schema/__1776357350450_1776357350450_4dbf6cd382e369a36093212064a6ffc9 +0 -0
  6. cellsearch/cell_metadata/__commits/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22.wrt +0 -0
  7. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/__fragment_metadata.tdb +3 -0
  8. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a0.tdb +3 -0
  9. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a1.tdb +3 -0
  10. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a10.tdb +3 -0
  11. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a11.tdb +3 -0
  12. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a12.tdb +3 -0
  13. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a12_var.tdb +3 -0
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  16. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a14.tdb +3 -0
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  30. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a3.tdb +3 -0
  31. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a3_var.tdb +3 -0
  32. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a4.tdb +3 -0
  33. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a4_var.tdb +3 -0
  34. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a5.tdb +3 -0
  35. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a5_var.tdb +3 -0
  36. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a6.tdb +3 -0
  37. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a6_var.tdb +3 -0
  38. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a7.tdb +3 -0
  39. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a7_var.tdb +3 -0
  40. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a8.tdb +3 -0
  41. cellsearch/cell_metadata/__fragments/__1776355513358_1776355513358_4723c31bec90650c2c4327db11069436_22/a9.tdb +3 -0
  42. cellsearch/cell_metadata/__meta/__1776355500449_1776355500449_530a47488a174ad7733a3ee42b1e3ae3 +0 -0
  43. cellsearch/cell_metadata/__schema/__1776355500437_1776355500437_3ed2422c7974b038ba475d59f5e5ce78 +0 -0
  44. decoder.ckpt +3 -0
  45. encoder.ckpt +3 -0
  46. gene_order.tsv +0 -0
  47. hyperparameters.json +1 -0
  48. label_ints.csv +699 -0
  49. layer_sizes.json +1 -0
  50. metadata.json +1 -0
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1
+ ,0
2
+ 0,primitive red blood cell
3
+ 1,platelet
4
+ 2,endothelial cell of sinusoid
5
+ 3,intermediate monocyte
6
+ 4,caudal ganglionic eminence derived cortical interneuron
7
+ 5,cerebellum glutamatergic neuron
8
+ 6,common lymphoid progenitor
9
+ 7,epithelial cell of proximal tubule segment 1
10
+ 8,odontoblast
11
+ 9,granular cell of epidermis
12
+ 10,liver dendritic cell
13
+ 11,mononuclear cell
14
+ 12,ciliated cell
15
+ 13,"lung resident memory CD8-positive, alpha-beta T cell"
16
+ 14,serous cell of epithelium of lobular bronchiole
17
+ 15,subcutaneous adipocyte
18
+ 16,endothelial cell of artery
19
+ 17,renal beta-intercalated cell
20
+ 18,cerebral cortex endothelial cell
21
+ 19,non-classical monocyte
22
+ 20,CD14-positive monocyte
23
+ 21,alveolar type 1 fibroblast cell
24
+ 22,alveolar capillary type 2 endothelial cell
25
+ 23,pluripotent stem cell
26
+ 24,club cell
27
+ 25,extratelencephalic-projecting glutamatergic cortical neuron
28
+ 26,cerebellar neuron
29
+ 27,"CD34-positive, CD38-negative hematopoietic stem cell"
30
+ 28,tracheobronchial smooth muscle cell
31
+ 29,fibroblast of lung
32
+ 30,cardiac endothelial cell
33
+ 31,osteoblast
34
+ 32,"decidual natural killer cell, human"
35
+ 33,mammary gland epithelial cell
36
+ 34,Langerhans cell
37
+ 35,stratified epithelial cell
38
+ 36,pericyte
39
+ 37,myoblast
40
+ 38,B-1a B cell
41
+ 39,Kupffer cell
42
+ 40,OFF-bipolar cell
43
+ 41,glomerular mesangial cell
44
+ 42,inhibitory interneuron
45
+ 43,ON midget ganglion cell
46
+ 44,basal epithelial cell of tracheobronchial tree
47
+ 45,neuroplacodal cell
48
+ 46,erythroblast
49
+ 47,fibroblast of cardiac tissue
50
+ 48,PP cell
51
+ 49,basal cell of urothelium
52
+ 50,skin fibroblast
53
+ 51,peridermal cell
54
+ 52,IgM plasma cell
55
+ 53,myeloid cell
56
+ 54,adipocyte of epicardial fat of left ventricle
57
+ 55,corneal epithelial cell
58
+ 56,helper T cell
59
+ 57,antibody secreting cell
60
+ 58,hypothalamus cell
61
+ 59,CD1c-positive myeloid dendritic cell
62
+ 60,ventricular cardiac muscle cell
63
+ 61,mature neutrophil
64
+ 62,intraepithelial lymphocyte
65
+ 63,cytotoxic T cell
66
+ 64,pre-B-I cell
67
+ 65,diffuse bipolar 4 cell
68
+ 66,stem cell
69
+ 67,medullary thymic epithelial cell type 1
70
+ 68,"CD14-positive, CD16-negative classical monocyte"
71
+ 69,dopaminergic neuron
72
+ 70,tracheobronchial goblet cell
73
+ 71,memory T cell
74
+ 72,ciliary muscle cell
75
+ 73,T-helper 1 cell
76
+ 74,forebrain neuroblast
77
+ 75,monocyte
78
+ 76,mucus secreting cell
79
+ 77,mural cell
80
+ 78,enteric smooth muscle cell
81
+ 79,basal-myoepithelial cell of mammary gland
82
+ 80,epithelial cell of nephron
83
+ 81,cerebral cortex pyramidal neuron
84
+ 82,perivascular cell
85
+ 83,type II muscle cell
86
+ 84,kidney loop of Henle thin descending limb epithelial cell
87
+ 85,erythroid lineage cell
88
+ 86,naive B cell
89
+ 87,stromal cell
90
+ 88,fibroblast of dermis
91
+ 89,group 3 innate lymphoid cell
92
+ 90,"CD8-positive, alpha-beta memory T cell, CD45RO-positive"
93
+ 91,endothelial cell of venule
94
+ 92,luminal adaptive secretory precursor cell of mammary gland
95
+ 93,"CD14-positive, CD16-positive monocyte"
96
+ 94,medullary thymic epithelial cell type 3
97
+ 95,kidney cortex collecting duct epithelial cell
98
+ 96,respiratory tract suprabasal cell
99
+ 97,neutrophil progenitor cell
100
+ 98,common myeloid progenitor
101
+ 99,kidney epithelial cell
102
+ 100,thymic fibroblast type 1
103
+ 101,immature natural killer cell
104
+ 102,skeletal muscle fibroblast
105
+ 103,colon goblet cell
106
+ 104,peripheral blood mononuclear cell
107
+ 105,type EC enteroendocrine cell
108
+ 106,diffuse bipolar 6 cell
109
+ 107,keratinocyte
110
+ 108,kidney loop of Henle thick ascending limb epithelial cell
111
+ 109,late pro-B cell
112
+ 110,eosinophil
113
+ 111,slow muscle cell
114
+ 112,basal cell of epithelium of trachea
115
+ 113,central nervous system neuron
116
+ 114,enterocyte of epithelium of large intestine
117
+ 115,bronchial goblet cell
118
+ 116,fibroblast of the aortic adventitia
119
+ 117,granulocyte
120
+ 118,kidney interstitial fibroblast
121
+ 119,CD4-positive helper T cell
122
+ 120,plasmablast
123
+ 121,eye photoreceptor cell
124
+ 122,smooth muscle myoblast
125
+ 123,Mueller cell
126
+ 124,corneal endothelial cell
127
+ 125,glycinergic amacrine cell
128
+ 126,Leydig cell
129
+ 127,kidney collecting duct cell
130
+ 128,neoplastic cell
131
+ 129,T-helper 17 cell
132
+ 130,blood vessel endothelial cell
133
+ 131,spermatid
134
+ 132,L6b glutamatergic cortical neuron
135
+ 133,secondary crest myofibroblast
136
+ 134,small pre-B-II cell
137
+ 135,"CD8-positive, alpha-beta cytotoxic T cell"
138
+ 136,epithelial cell of lower respiratory tract
139
+ 137,M cell of gut
140
+ 138,lens fiber cell
141
+ 139,periportal region hepatocyte
142
+ 140,VIP GABAergic cortical interneuron
143
+ 141,male germ cell
144
+ 142,prostate stromal cell
145
+ 143,megakaryocyte progenitor cell
146
+ 144,germinal center B cell
147
+ 145,cardiac muscle myoblast
148
+ 146,mesonephric nephron tubule epithelial cell
149
+ 147,"CD16-positive, CD56-dim natural killer cell, human"
150
+ 148,megakaryocyte
151
+ 149,brush cell of trachea
152
+ 150,myeloid lineage restricted progenitor cell
153
+ 151,pyramidal neuron
154
+ 152,lung goblet cell
155
+ 153,enterocyte of epithelium proper of small intestine
156
+ 154,endothelial tip cell
157
+ 155,"CD14-low, CD16-positive monocyte"
158
+ 156,kidney connecting tubule principal cell
159
+ 157,activated type II NK T cell
160
+ 158,OFF parasol ganglion cell
161
+ 159,lymphoid lineage restricted progenitor cell
162
+ 160,intestinal crypt stem cell of colon
163
+ 161,pancreatic A cell
164
+ 162,fibroblast of connective tissue of glandular part of prostate
165
+ 163,tracheal goblet cell
166
+ 164,lymphocyte
167
+ 165,eurydendroid cell
168
+ 166,megakaryocyte-erythroid progenitor cell
169
+ 167,intestinal crypt stem cell of small intestine
170
+ 168,"CD8-positive, CD28-negative, alpha-beta regulatory T cell"
171
+ 169,neural crest cell
172
+ 170,mesangial cell
173
+ 171,neural progenitor cell
174
+ 172,"double-positive, alpha-beta thymocyte"
175
+ 173,epithelial cell of sweat gland
176
+ 174,neuroendocrine cell
177
+ 175,neural stem cell
178
+ 176,T-helper 2 cell
179
+ 177,glutamatergic neuron
180
+ 178,double negative T regulatory cell
181
+ 179,ovarian surface epithelial cell
182
+ 180,"effector CD8-positive, alpha-beta T cell"
183
+ 181,thymocyte
184
+ 182,skeletal muscle satellite stem cell
185
+ 183,intestinal crypt stem cell
186
+ 184,"CD8-alpha alpha positive, gamma-delta intraepithelial T cell"
187
+ 185,kidney loop of Henle thin ascending limb epithelial cell
188
+ 186,cerebral cortex GABAergic interneuron
189
+ 187,"dendritic cell, human"
190
+ 188,B-1b B cell
191
+ 189,CD141-positive myeloid dendritic cell
192
+ 190,endothelial cell
193
+ 191,diffuse bipolar 3a cell
194
+ 192,endothelial cell of uterus
195
+ 193,premigratory neural crest cell
196
+ 194,goblet cell
197
+ 195,urothelial cell
198
+ 196,glial cell
199
+ 197,"group 2 innate lymphoid cell, human"
200
+ 198,respiratory basal cell
201
+ 199,neuroblast (sensu Nematoda and Protostomia)
202
+ 200,choroid plexus epithelial cell
203
+ 201,L4 intratelencephalic projecting glutamatergic neuron
204
+ 202,enteroendocrine cell of colon
205
+ 203,kidney collecting duct intercalated cell
206
+ 204,myelinating Schwann cell
207
+ 205,oligodendrocyte
208
+ 206,immature B cell
209
+ 207,epithelial cell of urethra
210
+ 208,alveolar adventitial fibroblast
211
+ 209,enteric neuron
212
+ 210,luminal epithelial cell of mammary gland
213
+ 211,microcirculation associated smooth muscle cell
214
+ 212,tendon cell
215
+ 213,lamp5 GABAergic cortical interneuron
216
+ 214,Bergmann glial cell
217
+ 215,IgG-negative class switched memory B cell
218
+ 216,neutrophil
219
+ 217,non-pigmented ciliary epithelial cell
220
+ 218,"ILC1, human"
221
+ 219,OFF midget ganglion cell
222
+ 220,mesothelial cell of pleura
223
+ 221,anterior lens cell
224
+ 222,GABAergic amacrine cell
225
+ 223,flat midget bipolar cell
226
+ 224,fibro/adipogenic progenitor cell
227
+ 225,bronchiolar smooth muscle cell
228
+ 226,renal alpha-intercalated cell
229
+ 227,retinal ganglion cell
230
+ 228,preosteoblast
231
+ 229,memory B cell
232
+ 230,progenitor cell
233
+ 231,kidney cell
234
+ 232,cardiac neuron
235
+ 233,mesodermal cell
236
+ 234,taste receptor cell
237
+ 235,professional antigen presenting cell
238
+ 236,"CD8-alpha-beta-positive, alpha-beta intraepithelial T cell"
239
+ 237,stromal cell of ovary
240
+ 238,sncg GABAergic cortical interneuron
241
+ 239,alveolar macrophage
242
+ 240,follicular B cell
243
+ 241,type I NK T cell
244
+ 242,neural cell
245
+ 243,T-helper 22 cell
246
+ 244,medullary thymic epithelial cell
247
+ 245,papillary tips cell
248
+ 246,vein endothelial cell of respiratory system
249
+ 247,proerythroblast
250
+ 248,"CD14-positive, CD16-low monocyte"
251
+ 249,respiratory tract multiciliated cell
252
+ 250,smooth muscle cell of the brain vasculature
253
+ 251,basophil mast progenitor cell
254
+ 252,cardiac muscle cell
255
+ 253,monocyte-derived dendritic cell
256
+ 254,respiratory tract epithelial cell
257
+ 255,contractile cell
258
+ 256,natural T-regulatory cell
259
+ 257,common dendritic progenitor
260
+ 258,cortical thymic epithelial cell
261
+ 259,"plasmacytoid dendritic cell, human"
262
+ 260,immature innate lymphoid cell
263
+ 261,class switched memory B cell
264
+ 262,fallopian tube secretory epithelial cell
265
+ 263,pancreatic epsilon cell
266
+ 264,"group 3 innate lymphoid cell, human"
267
+ 265,Cajal-Retzius cell
268
+ 266,"activated CD8-positive, alpha-beta T cell, human"
269
+ 267,transitional stage B cell
270
+ 268,hippocampal interneuron
271
+ 269,"effector CD4-positive, alpha-beta T cell"
272
+ 270,foveolar cell of stomach
273
+ 271,pre-conventional dendritic cell
274
+ 272,endothelial cell of arteriole
275
+ 273,skeletal muscle fiber
276
+ 274,mesothelial cell
277
+ 275,parasol ganglion cell of retina
278
+ 276,endothelial cell of placenta
279
+ 277,chondroblast
280
+ 278,vestibular dark cell
281
+ 279,pro-T cell
282
+ 280,sebaceous gland cell
283
+ 281,pigmented ciliary epithelial cell
284
+ 282,secondary lens fiber
285
+ 283,"effector memory CD4-positive, alpha-beta T cell"
286
+ 284,epithelial cell of esophagus
287
+ 285,endothelial cell of pericentral hepatic sinusoid
288
+ 286,"CD8-positive, alpha-beta T cell"
289
+ 287,endosteal cell
290
+ 288,sst GABAergic cortical interneuron
291
+ 289,endothelial cell of respiratory system lymphatic vessel
292
+ 290,type L enteroendocrine cell
293
+ 291,sebocyte
294
+ 292,mature gamma-delta T cell
295
+ 293,epithelial cell of prostate
296
+ 294,acinar cell of salivary gland
297
+ 295,lung interstitial macrophage
298
+ 296,enterocyte of epithelium of small intestine
299
+ 297,L2/3 intratelencephalic projecting glutamatergic neuron
300
+ 298,"CD4-positive, alpha-beta memory T cell"
301
+ 299,fraction A pre-pro B cell
302
+ 300,pancreatic acinar cell
303
+ 301,kidney capillary endothelial cell
304
+ 302,myelocyte
305
+ 303,BEST4+ enterocyte
306
+ 304,pancreatic ductal cell
307
+ 305,vascular associated smooth muscle cell
308
+ 306,stem cell of epidermis
309
+ 307,"central memory CD4-positive, alpha-beta T cell"
310
+ 308,hepatoblast
311
+ 309,early T lineage precursor
312
+ 310,thymic fibroblast type 2
313
+ 311,interstitial cell of Cajal
314
+ 312,"effector memory CD8-positive, alpha-beta T cell, terminally differentiated"
315
+ 313,mature astrocyte
316
+ 314,neuro-medullary thymic epithelial cell
317
+ 315,polychromatophilic erythroblast
318
+ 316,ciliated epithelial cell
319
+ 317,Sertoli cell
320
+ 318,glomerular endothelial cell
321
+ 319,spermatocyte
322
+ 320,conjunctival epithelial cell
323
+ 321,cell in vitro
324
+ 322,smooth muscle fiber of ileum
325
+ 323,peritubular myoid cell
326
+ 324,midbrain dopaminergic neuron
327
+ 325,reticulocyte
328
+ 326,luminal hormone-sensing cell of mammary gland
329
+ 327,basophil
330
+ 328,muscle precursor cell
331
+ 329,hepatic pit cell
332
+ 330,pro-B cell
333
+ 331,epithelial cell of small intestine
334
+ 332,ionocyte
335
+ 333,mature microglial cell
336
+ 334,classical monocyte
337
+ 335,suprabasal keratinocyte
338
+ 336,erythroid progenitor cell
339
+ 337,elicited macrophage
340
+ 338,myometrial cell
341
+ 339,theca cell
342
+ 340,muscle cell
343
+ 341,innate lymphoid cell
344
+ 342,serous secreting cell
345
+ 343,epithelial cell of proximal tubule
346
+ 344,mononuclear phagocyte
347
+ 345,myo-medullary thymic epithelial cell
348
+ 346,parietal cell
349
+ 347,retinal progenitor cell
350
+ 348,deuterosomal cell
351
+ 349,"CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell"
352
+ 350,B-1 B cell
353
+ 351,peg cell
354
+ 352,Merkel cell
355
+ 353,multiciliated columnar cell of tracheobronchial tree
356
+ 354,"CD16-negative, CD56-bright natural killer cell, human"
357
+ 355,leukocyte
358
+ 356,S cone cell
359
+ 357,respiratory tract hillock cell
360
+ 358,secondary lymphoid organ macrophage
361
+ 359,B cell
362
+ 360,syncytiotrophoblast cell
363
+ 361,adipocyte
364
+ 362,forebrain radial glial cell
365
+ 363,orthochromatic erythroblast
366
+ 364,endothelial cell of periportal hepatic sinusoid
367
+ 365,midzonal region hepatocyte
368
+ 366,cardiac blood vessel endothelial cell
369
+ 367,colon epithelial cell
370
+ 368,neuroblast (sensu Vertebrata)
371
+ 369,kidney interstitial alternatively activated macrophage
372
+ 370,germ cell
373
+ 371,conventional dendritic cell
374
+ 372,hematopoietic precursor cell
375
+ 373,enteroglial cell
376
+ 374,intrahepatic cholangiocyte
377
+ 375,mesenchymal stem cell
378
+ 376,ependymal cell
379
+ 377,mature B cell
380
+ 378,cell of skeletal muscle
381
+ 379,glandular secretory epithelial cell
382
+ 380,sensory neuron
383
+ 381,cardiac mesenchymal cell
384
+ 382,pulmonary capillary endothelial cell
385
+ 383,myofibroblast cell
386
+ 384,articular chondrocyte
387
+ 385,intestinal tuft cell
388
+ 386,umbrella cell of urothelium
389
+ 387,immature alpha-beta T cell
390
+ 388,L2/3-6 intratelencephalic projecting glutamatergic neuron
391
+ 389,enteroendocrine cell
392
+ 390,"CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human"
393
+ 391,basal epithelial cell of prostatic duct
394
+ 392,macrophage dendritic cell progenitor
395
+ 393,connective tissue cell
396
+ 394,memory regulatory T cell
397
+ 395,mucosal invariant T cell
398
+ 396,supporting cell
399
+ 397,abnormal cell
400
+ 398,double negative thymocyte
401
+ 399,promyelocyte
402
+ 400,enterocyte of epithelium proper of ileum
403
+ 401,interneuron
404
+ 402,lung endothelial cell
405
+ 403,vasa recta descending limb cell
406
+ 404,ON-blue cone bipolar cell
407
+ 405,macroglial cell
408
+ 406,skeletal muscle satellite cell
409
+ 407,diffuse bipolar 3b cell
410
+ 408,endothelial cell of lymphatic vessel
411
+ 409,kidney collecting duct principal cell
412
+ 410,transit amplifying cell of small intestine
413
+ 411,MHC-II-positive classical monocyte
414
+ 412,smooth muscle cell of prostate
415
+ 413,OFFx cell
416
+ 414,mature conventional dendritic cell
417
+ 415,acinar cell
418
+ 416,transit amplifying cell
419
+ 417,promonocyte
420
+ 418,kidney connecting tubule epithelial cell
421
+ 419,hypertrophic chondrocyte
422
+ 420,vascular lymphangioblast
423
+ 421,basal cell of epidermis
424
+ 422,astrocyte
425
+ 423,IgG plasma cell
426
+ 424,L5/6 near-projecting glutamatergic neuron
427
+ 425,invaginating midget bipolar cell
428
+ 426,fast muscle cell
429
+ 427,salivary gland cell
430
+ 428,respiratory tract goblet cell
431
+ 429,mast cell
432
+ 430,fibroblast of choroid plexus
433
+ 431,keratinizing barrier epithelial cell
434
+ 432,bronchial smooth muscle cell
435
+ 433,adventitial cell
436
+ 434,diffuse bipolar 1 cell
437
+ 435,epithelial fate stem cell
438
+ 436,centroblast
439
+ 437,fibroblast
440
+ 438,hematopoietic stem cell
441
+ 439,neural crest derived neuron
442
+ 440,epithelial cell of stratum germinativum of esophagus
443
+ 441,colon endothelial cell
444
+ 442,basal cell of prostate epithelium
445
+ 443,neuronal receptor cell
446
+ 444,plasma cell
447
+ 445,dendritic cell
448
+ 446,tongue muscle cell
449
+ 447,kidney loop of Henle cortical thick ascending limb epithelial cell
450
+ 448,medium spiny neuron
451
+ 449,endothelial cell of vascular tree
452
+ 450,pancreatic PP cell
453
+ 451,spermatogonium
454
+ 452,myoepithelial cell
455
+ 453,progenitor cell of mammary luminal epithelium
456
+ 454,pulmonary artery endothelial cell
457
+ 455,muscle fibroblast
458
+ 456,plasmacytoid dendritic cell
459
+ 457,type I muscle cell
460
+ 458,amacrine cell
461
+ 459,Purkinje cell
462
+ 460,transit amplifying cell of colon
463
+ 461,epidermal Langerhans cell
464
+ 462,hippocampal granule cell
465
+ 463,"CD4-positive, alpha-beta T cell"
466
+ 464,myeloid dendritic cell
467
+ 465,P/D1 enteroendocrine cell
468
+ 466,pancreatic stellate cell
469
+ 467,GABAergic neuron
470
+ 468,ileal goblet cell
471
+ 469,enteroendocrine cell of small intestine
472
+ 470,Schwann cell precursor
473
+ 471,fetal cardiomyocyte
474
+ 472,granulosa cell
475
+ 473,pulmonary alveolar epithelial cell
476
+ 474,"naive thymus-derived CD8-positive, alpha-beta T cell"
477
+ 475,microfold cell of epithelium of small intestine
478
+ 476,giant bipolar cell
479
+ 477,lung microvascular endothelial cell
480
+ 478,peptic cell
481
+ 479,non-myelinating Schwann cell
482
+ 480,"CD8-positive, alpha-beta memory T cell"
483
+ 481,serous cell of epithelium of trachea
484
+ 482,naive regulatory T cell
485
+ 483,L5 extratelencephalic projecting glutamatergic cortical neuron
486
+ 484,mucus secreting cell of bronchus submucosal gland
487
+ 485,blood cell
488
+ 486,pulmonary ionocyte
489
+ 487,pulmonary alveolar type 2 cell
490
+ 488,naive T cell
491
+ 489,Schwann cell
492
+ 490,nasal mucosa goblet cell
493
+ 491,centrocyte
494
+ 492,skeletal muscle myoblast
495
+ 493,cerebellar granule cell
496
+ 494,mesenchymal cell
497
+ 495,colonocyte
498
+ 496,IgA plasma cell
499
+ 497,glioblast
500
+ 498,hepatocyte
501
+ 499,pulmonary alveolar type 1 cell
502
+ 500,myeloid leukocyte
503
+ 501,kidney interstitial cell
504
+ 502,podocyte
505
+ 503,lactocyte
506
+ 504,chandelier pvalb GABAergic cortical interneuron
507
+ 505,large pre-B-II cell
508
+ 506,tuft cell of colon
509
+ 507,interstitial cell of ovary
510
+ 508,basal cell
511
+ 509,midget ganglion cell of retina
512
+ 510,hepatic stellate cell
513
+ 511,intermediate cell of urothelium
514
+ 512,placental villous trophoblast
515
+ 513,tissue-resident macrophage
516
+ 514,glomerular capillary endothelial cell
517
+ 515,lung multiciliated epithelial cell
518
+ 516,hematopoietic oligopotent progenitor cell
519
+ 517,cell
520
+ 518,group 2 innate lymphoid cell
521
+ 519,alpha-beta T cell
522
+ 520,lung macrophage
523
+ 521,luminal cell of prostate epithelium
524
+ 522,radial glial cell
525
+ 523,"central memory CD8-positive, alpha-beta T cell"
526
+ 524,unswitched memory B cell
527
+ 525,basophilic erythroblast
528
+ 526,stratified squamous epithelial cell
529
+ 527,GABAergic interneuron
530
+ 528,malignant cell
531
+ 529,regulatory T cell
532
+ 530,keratocyte
533
+ 531,kidney loop of Henle ascending limb epithelial cell
534
+ 532,supporting cell of vestibular epithelium
535
+ 533,pvalb GABAergic cortical interneuron
536
+ 534,epidermal cell
537
+ 535,paneth cell of epithelium of small intestine
538
+ 536,"CD8-positive, alpha-beta thymocyte"
539
+ 537,medullary thymic epithelial cell type 2
540
+ 538,lung secretory cell
541
+ 539,H2 horizontal cell
542
+ 540,pulmonary interstitial fibroblast
543
+ 541,mature NK T cell
544
+ 542,bone marrow cell
545
+ 543,mature T cell
546
+ 544,stromal cell of bone marrow
547
+ 545,osteoclast
548
+ 546,bronchial epithelial cell
549
+ 547,precursor B cell
550
+ 548,retinal cone cell
551
+ 549,lymphocyte of B lineage
552
+ 550,epithelial cell of uterus
553
+ 551,decidual cell
554
+ 552,"CD4-positive, CD25-positive, alpha-beta regulatory T cell"
555
+ 553,alternatively activated macrophage
556
+ 554,airway submucosal gland collecting duct epithelial cell
557
+ 555,epithelial cell of proximal tubule segment 3
558
+ 556,serous secreting cell of bronchus submucosal gland
559
+ 557,squamous epithelial cell
560
+ 558,kidney loop of Henle descending limb epithelial cell
561
+ 559,serous cell of epithelium of bronchus
562
+ 560,perineurial cell
563
+ 561,cholangiocyte
564
+ 562,endocardial cell
565
+ 563,mucous neck cell
566
+ 564,Hofbauer cell
567
+ 565,renal principal cell
568
+ 566,vein endothelial cell
569
+ 567,vascular leptomeningeal cell
570
+ 568,T cell
571
+ 569,"erythroid progenitor cell, mammalian"
572
+ 570,intestinal epithelial cell
573
+ 571,glandular cell of esophagus
574
+ 572,retinal blood vessel endothelial cell
575
+ 573,fibroblast of connective tissue of nonglandular part of prostate
576
+ 574,smooth muscle cell
577
+ 575,type G enteroendocrine cell
578
+ 576,tuft cell of small intestine
579
+ 577,epithelial cell of lung
580
+ 578,mature alpha-beta T cell
581
+ 579,primary cultured cell
582
+ 580,precursor cell
583
+ 581,chondrocyte
584
+ 582,starburst amacrine cell
585
+ 583,tonsil germinal center B cell
586
+ 584,pulmonary neuroendocrine cell
587
+ 585,astrocyte of the cerebral cortex
588
+ 586,lung pericyte
589
+ 587,extracellular matrix secreting cell
590
+ 588,T follicular regulatory cell
591
+ 589,paneth cell of colon
592
+ 590,intestine goblet cell
593
+ 591,neuron
594
+ 592,alveolar capillary type 1 endothelial cell
595
+ 593,"myeloid dendritic cell, human"
596
+ 594,early lymphoid progenitor
597
+ 595,"activated CD8-positive, alpha-beta T cell"
598
+ 596,colon macrophage
599
+ 597,uterine smooth muscle cell
600
+ 598,oligodendrocyte precursor cell
601
+ 599,myoepithelial cell of bronchus submucosal gland
602
+ 600,collagen secreting cell
603
+ 601,pancreatic D cell
604
+ 602,epithelial cell of thymus
605
+ 603,small intestine goblet cell
606
+ 604,brush cell of tracheobronchial tree
607
+ 605,enucleated reticulocyte
608
+ 606,multiciliated epithelial cell
609
+ 607,ON parasol ganglion cell
610
+ 608,enterochromaffin-like cell
611
+ 609,melanocyte
612
+ 610,"naive thymus-derived CD4-positive, alpha-beta T cell"
613
+ 611,retinal bipolar neuron
614
+ 612,"CD8-positive, alpha-beta regulatory T cell"
615
+ 613,neuron associated cell
616
+ 614,oocyte
617
+ 615,kidney distal convoluted tubule epithelial cell
618
+ 616,mesothelial cell of epicardium
619
+ 617,T follicular helper cell
620
+ 618,early pro-B cell
621
+ 619,ON-bipolar cell
622
+ 620,columnar/cuboidal epithelial cell
623
+ 621,granulocyte monocyte progenitor cell
624
+ 622,gut endothelial cell
625
+ 623,microglial cell
626
+ 624,exhausted T cell
627
+ 625,fibroblast of breast
628
+ 626,tracheobronchial serous cell
629
+ 627,"activated CD4-positive, alpha-beta T cell, human"
630
+ 628,hippocampal astrocyte
631
+ 629,"effector memory CD8-positive, alpha-beta T cell"
632
+ 630,endothelial cell of hepatic sinusoid
633
+ 631,bronchus fibroblast of lung
634
+ 632,retinal pigment epithelial cell
635
+ 633,corticothalamic-projecting glutamatergic cortical neuron
636
+ 634,vasa recta ascending limb cell
637
+ 635,paneth cell
638
+ 636,erythrocyte
639
+ 637,type B pancreatic cell
640
+ 638,mesenchymal stem cell of adipose tissue
641
+ 639,macrophage
642
+ 640,hematopoietic cell
643
+ 641,enterocyte of epithelium proper of duodenum
644
+ 642,mesothelial fibroblast
645
+ 643,inflammatory macrophage
646
+ 644,"activated CD4-positive, alpha-beta T cell"
647
+ 645,prickle cell
648
+ 646,endocrine cell
649
+ 647,diffuse bipolar 2 cell
650
+ 648,embryonic fibroblast
651
+ 649,IgG memory B cell
652
+ 650,rod bipolar cell
653
+ 651,"CD4-positive, alpha-beta cytotoxic T cell"
654
+ 652,enterocyte of epithelium proper of jejunum
655
+ 653,prostate gland microvascular endothelial cell
656
+ 654,hippocampal pyramidal neuron
657
+ 655,central nervous system macrophage
658
+ 656,lens epithelial cell
659
+ 657,renal intercalated cell
660
+ 658,mucus secreting cell of tracheobronchial tree submucosal gland
661
+ 659,duct epithelial cell
662
+ 660,capillary endothelial cell
663
+ 661,"CD4-positive, alpha-beta thymocyte"
664
+ 662,hematopoietic multipotent progenitor cell
665
+ 663,immature Schwann cell
666
+ 664,epithelial cell
667
+ 665,secretory cell
668
+ 666,retina horizontal cell
669
+ 667,immature neutrophil
670
+ 668,kidney resident macrophage
671
+ 669,centrilobular region hepatocyte
672
+ 670,"CD4-negative, CD8-negative, alpha-beta intraepithelial T cell"
673
+ 671,extravillous trophoblast
674
+ 672,fibroblast of mammary gland
675
+ 673,B-2 B cell
676
+ 674,retinal rod cell
677
+ 675,enterocyte
678
+ 676,hair follicular keratinocyte
679
+ 677,gamma-delta T cell
680
+ 678,blood vessel smooth muscle cell
681
+ 679,peripheral nervous system neuron
682
+ 680,renal interstitial pericyte
683
+ 681,parietal epithelial cell
684
+ 682,natural killer cell
685
+ 683,pigmented epithelial cell
686
+ 684,follicular dendritic cell
687
+ 685,large intestine goblet cell
688
+ 686,epithelial cell of pancreas
689
+ 687,lung megakaryocyte
690
+ 688,regular atrial cardiac myocyte
691
+ 689,epithelial cell of stomach
692
+ 690,melanocyte of skin
693
+ 691,brush cell
694
+ 692,bladder urothelial cell
695
+ 693,cerebral cortex neuron
696
+ 694,corticomedullary thymic epithelial cell
697
+ 695,neuron of the forebrain
698
+ 696,H1 horizontal cell
699
+ 697,near-projecting glutamatergic cortical neuron
layer_sizes.json ADDED
@@ -0,0 +1 @@
 
 
1
+ {"network.0.1.weight": [1024, 28231], "network.0.1.bias": [1024], "network.0.2.weight": [1024], "network.0.2.bias": [1024], "network.0.2.running_mean": [1024], "network.0.2.running_var": [1024], "network.0.2.num_batches_tracked": [], "network.0.3.weight": [1], "network.1.1.weight": [1024, 1024], "network.1.1.bias": [1024], "network.1.2.weight": [1024], "network.1.2.bias": [1024], "network.1.2.running_mean": [1024], "network.1.2.running_var": [1024], "network.1.2.num_batches_tracked": [], "network.1.3.weight": [1], "network.2.1.weight": [1024, 1024], "network.2.1.bias": [1024], "network.2.2.weight": [1024], "network.2.2.bias": [1024], "network.2.2.running_mean": [1024], "network.2.2.running_var": [1024], "network.2.2.num_batches_tracked": [], "network.2.3.weight": [1], "network.3.weight": [128, 1024], "network.3.bias": [128]}
metadata.json ADDED
@@ -0,0 +1 @@
 
 
1
+ {"date": "2025-04-23 13:06:56", "train_path": "/data1/peerd/ibrahih3/cellXgene/scimilarity_data/train/", "val_path": null}