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- .gitattributes +36 -0
- annotation/reference_labels.tsv +3 -0
- cellsearch/cell_embedding/__commits/__1776357350490_1776357499738_2b0ebe28422bafc9e42832211bd96bcc_22.wrt +0 -0
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- decoder.ckpt +3 -0
- encoder.ckpt +3 -0
- gene_order.tsv +0 -0
- hyperparameters.json +1 -0
- label_ints.csv +699 -0
- layer_sizes.json +1 -0
- metadata.json +1 -0
.gitattributes
CHANGED
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@@ -33,3 +33,39 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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annotation/reference_labels.tsv
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ADDED
|
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|
|
| 1 |
+
,0
|
| 2 |
+
0,primitive red blood cell
|
| 3 |
+
1,platelet
|
| 4 |
+
2,endothelial cell of sinusoid
|
| 5 |
+
3,intermediate monocyte
|
| 6 |
+
4,caudal ganglionic eminence derived cortical interneuron
|
| 7 |
+
5,cerebellum glutamatergic neuron
|
| 8 |
+
6,common lymphoid progenitor
|
| 9 |
+
7,epithelial cell of proximal tubule segment 1
|
| 10 |
+
8,odontoblast
|
| 11 |
+
9,granular cell of epidermis
|
| 12 |
+
10,liver dendritic cell
|
| 13 |
+
11,mononuclear cell
|
| 14 |
+
12,ciliated cell
|
| 15 |
+
13,"lung resident memory CD8-positive, alpha-beta T cell"
|
| 16 |
+
14,serous cell of epithelium of lobular bronchiole
|
| 17 |
+
15,subcutaneous adipocyte
|
| 18 |
+
16,endothelial cell of artery
|
| 19 |
+
17,renal beta-intercalated cell
|
| 20 |
+
18,cerebral cortex endothelial cell
|
| 21 |
+
19,non-classical monocyte
|
| 22 |
+
20,CD14-positive monocyte
|
| 23 |
+
21,alveolar type 1 fibroblast cell
|
| 24 |
+
22,alveolar capillary type 2 endothelial cell
|
| 25 |
+
23,pluripotent stem cell
|
| 26 |
+
24,club cell
|
| 27 |
+
25,extratelencephalic-projecting glutamatergic cortical neuron
|
| 28 |
+
26,cerebellar neuron
|
| 29 |
+
27,"CD34-positive, CD38-negative hematopoietic stem cell"
|
| 30 |
+
28,tracheobronchial smooth muscle cell
|
| 31 |
+
29,fibroblast of lung
|
| 32 |
+
30,cardiac endothelial cell
|
| 33 |
+
31,osteoblast
|
| 34 |
+
32,"decidual natural killer cell, human"
|
| 35 |
+
33,mammary gland epithelial cell
|
| 36 |
+
34,Langerhans cell
|
| 37 |
+
35,stratified epithelial cell
|
| 38 |
+
36,pericyte
|
| 39 |
+
37,myoblast
|
| 40 |
+
38,B-1a B cell
|
| 41 |
+
39,Kupffer cell
|
| 42 |
+
40,OFF-bipolar cell
|
| 43 |
+
41,glomerular mesangial cell
|
| 44 |
+
42,inhibitory interneuron
|
| 45 |
+
43,ON midget ganglion cell
|
| 46 |
+
44,basal epithelial cell of tracheobronchial tree
|
| 47 |
+
45,neuroplacodal cell
|
| 48 |
+
46,erythroblast
|
| 49 |
+
47,fibroblast of cardiac tissue
|
| 50 |
+
48,PP cell
|
| 51 |
+
49,basal cell of urothelium
|
| 52 |
+
50,skin fibroblast
|
| 53 |
+
51,peridermal cell
|
| 54 |
+
52,IgM plasma cell
|
| 55 |
+
53,myeloid cell
|
| 56 |
+
54,adipocyte of epicardial fat of left ventricle
|
| 57 |
+
55,corneal epithelial cell
|
| 58 |
+
56,helper T cell
|
| 59 |
+
57,antibody secreting cell
|
| 60 |
+
58,hypothalamus cell
|
| 61 |
+
59,CD1c-positive myeloid dendritic cell
|
| 62 |
+
60,ventricular cardiac muscle cell
|
| 63 |
+
61,mature neutrophil
|
| 64 |
+
62,intraepithelial lymphocyte
|
| 65 |
+
63,cytotoxic T cell
|
| 66 |
+
64,pre-B-I cell
|
| 67 |
+
65,diffuse bipolar 4 cell
|
| 68 |
+
66,stem cell
|
| 69 |
+
67,medullary thymic epithelial cell type 1
|
| 70 |
+
68,"CD14-positive, CD16-negative classical monocyte"
|
| 71 |
+
69,dopaminergic neuron
|
| 72 |
+
70,tracheobronchial goblet cell
|
| 73 |
+
71,memory T cell
|
| 74 |
+
72,ciliary muscle cell
|
| 75 |
+
73,T-helper 1 cell
|
| 76 |
+
74,forebrain neuroblast
|
| 77 |
+
75,monocyte
|
| 78 |
+
76,mucus secreting cell
|
| 79 |
+
77,mural cell
|
| 80 |
+
78,enteric smooth muscle cell
|
| 81 |
+
79,basal-myoepithelial cell of mammary gland
|
| 82 |
+
80,epithelial cell of nephron
|
| 83 |
+
81,cerebral cortex pyramidal neuron
|
| 84 |
+
82,perivascular cell
|
| 85 |
+
83,type II muscle cell
|
| 86 |
+
84,kidney loop of Henle thin descending limb epithelial cell
|
| 87 |
+
85,erythroid lineage cell
|
| 88 |
+
86,naive B cell
|
| 89 |
+
87,stromal cell
|
| 90 |
+
88,fibroblast of dermis
|
| 91 |
+
89,group 3 innate lymphoid cell
|
| 92 |
+
90,"CD8-positive, alpha-beta memory T cell, CD45RO-positive"
|
| 93 |
+
91,endothelial cell of venule
|
| 94 |
+
92,luminal adaptive secretory precursor cell of mammary gland
|
| 95 |
+
93,"CD14-positive, CD16-positive monocyte"
|
| 96 |
+
94,medullary thymic epithelial cell type 3
|
| 97 |
+
95,kidney cortex collecting duct epithelial cell
|
| 98 |
+
96,respiratory tract suprabasal cell
|
| 99 |
+
97,neutrophil progenitor cell
|
| 100 |
+
98,common myeloid progenitor
|
| 101 |
+
99,kidney epithelial cell
|
| 102 |
+
100,thymic fibroblast type 1
|
| 103 |
+
101,immature natural killer cell
|
| 104 |
+
102,skeletal muscle fibroblast
|
| 105 |
+
103,colon goblet cell
|
| 106 |
+
104,peripheral blood mononuclear cell
|
| 107 |
+
105,type EC enteroendocrine cell
|
| 108 |
+
106,diffuse bipolar 6 cell
|
| 109 |
+
107,keratinocyte
|
| 110 |
+
108,kidney loop of Henle thick ascending limb epithelial cell
|
| 111 |
+
109,late pro-B cell
|
| 112 |
+
110,eosinophil
|
| 113 |
+
111,slow muscle cell
|
| 114 |
+
112,basal cell of epithelium of trachea
|
| 115 |
+
113,central nervous system neuron
|
| 116 |
+
114,enterocyte of epithelium of large intestine
|
| 117 |
+
115,bronchial goblet cell
|
| 118 |
+
116,fibroblast of the aortic adventitia
|
| 119 |
+
117,granulocyte
|
| 120 |
+
118,kidney interstitial fibroblast
|
| 121 |
+
119,CD4-positive helper T cell
|
| 122 |
+
120,plasmablast
|
| 123 |
+
121,eye photoreceptor cell
|
| 124 |
+
122,smooth muscle myoblast
|
| 125 |
+
123,Mueller cell
|
| 126 |
+
124,corneal endothelial cell
|
| 127 |
+
125,glycinergic amacrine cell
|
| 128 |
+
126,Leydig cell
|
| 129 |
+
127,kidney collecting duct cell
|
| 130 |
+
128,neoplastic cell
|
| 131 |
+
129,T-helper 17 cell
|
| 132 |
+
130,blood vessel endothelial cell
|
| 133 |
+
131,spermatid
|
| 134 |
+
132,L6b glutamatergic cortical neuron
|
| 135 |
+
133,secondary crest myofibroblast
|
| 136 |
+
134,small pre-B-II cell
|
| 137 |
+
135,"CD8-positive, alpha-beta cytotoxic T cell"
|
| 138 |
+
136,epithelial cell of lower respiratory tract
|
| 139 |
+
137,M cell of gut
|
| 140 |
+
138,lens fiber cell
|
| 141 |
+
139,periportal region hepatocyte
|
| 142 |
+
140,VIP GABAergic cortical interneuron
|
| 143 |
+
141,male germ cell
|
| 144 |
+
142,prostate stromal cell
|
| 145 |
+
143,megakaryocyte progenitor cell
|
| 146 |
+
144,germinal center B cell
|
| 147 |
+
145,cardiac muscle myoblast
|
| 148 |
+
146,mesonephric nephron tubule epithelial cell
|
| 149 |
+
147,"CD16-positive, CD56-dim natural killer cell, human"
|
| 150 |
+
148,megakaryocyte
|
| 151 |
+
149,brush cell of trachea
|
| 152 |
+
150,myeloid lineage restricted progenitor cell
|
| 153 |
+
151,pyramidal neuron
|
| 154 |
+
152,lung goblet cell
|
| 155 |
+
153,enterocyte of epithelium proper of small intestine
|
| 156 |
+
154,endothelial tip cell
|
| 157 |
+
155,"CD14-low, CD16-positive monocyte"
|
| 158 |
+
156,kidney connecting tubule principal cell
|
| 159 |
+
157,activated type II NK T cell
|
| 160 |
+
158,OFF parasol ganglion cell
|
| 161 |
+
159,lymphoid lineage restricted progenitor cell
|
| 162 |
+
160,intestinal crypt stem cell of colon
|
| 163 |
+
161,pancreatic A cell
|
| 164 |
+
162,fibroblast of connective tissue of glandular part of prostate
|
| 165 |
+
163,tracheal goblet cell
|
| 166 |
+
164,lymphocyte
|
| 167 |
+
165,eurydendroid cell
|
| 168 |
+
166,megakaryocyte-erythroid progenitor cell
|
| 169 |
+
167,intestinal crypt stem cell of small intestine
|
| 170 |
+
168,"CD8-positive, CD28-negative, alpha-beta regulatory T cell"
|
| 171 |
+
169,neural crest cell
|
| 172 |
+
170,mesangial cell
|
| 173 |
+
171,neural progenitor cell
|
| 174 |
+
172,"double-positive, alpha-beta thymocyte"
|
| 175 |
+
173,epithelial cell of sweat gland
|
| 176 |
+
174,neuroendocrine cell
|
| 177 |
+
175,neural stem cell
|
| 178 |
+
176,T-helper 2 cell
|
| 179 |
+
177,glutamatergic neuron
|
| 180 |
+
178,double negative T regulatory cell
|
| 181 |
+
179,ovarian surface epithelial cell
|
| 182 |
+
180,"effector CD8-positive, alpha-beta T cell"
|
| 183 |
+
181,thymocyte
|
| 184 |
+
182,skeletal muscle satellite stem cell
|
| 185 |
+
183,intestinal crypt stem cell
|
| 186 |
+
184,"CD8-alpha alpha positive, gamma-delta intraepithelial T cell"
|
| 187 |
+
185,kidney loop of Henle thin ascending limb epithelial cell
|
| 188 |
+
186,cerebral cortex GABAergic interneuron
|
| 189 |
+
187,"dendritic cell, human"
|
| 190 |
+
188,B-1b B cell
|
| 191 |
+
189,CD141-positive myeloid dendritic cell
|
| 192 |
+
190,endothelial cell
|
| 193 |
+
191,diffuse bipolar 3a cell
|
| 194 |
+
192,endothelial cell of uterus
|
| 195 |
+
193,premigratory neural crest cell
|
| 196 |
+
194,goblet cell
|
| 197 |
+
195,urothelial cell
|
| 198 |
+
196,glial cell
|
| 199 |
+
197,"group 2 innate lymphoid cell, human"
|
| 200 |
+
198,respiratory basal cell
|
| 201 |
+
199,neuroblast (sensu Nematoda and Protostomia)
|
| 202 |
+
200,choroid plexus epithelial cell
|
| 203 |
+
201,L4 intratelencephalic projecting glutamatergic neuron
|
| 204 |
+
202,enteroendocrine cell of colon
|
| 205 |
+
203,kidney collecting duct intercalated cell
|
| 206 |
+
204,myelinating Schwann cell
|
| 207 |
+
205,oligodendrocyte
|
| 208 |
+
206,immature B cell
|
| 209 |
+
207,epithelial cell of urethra
|
| 210 |
+
208,alveolar adventitial fibroblast
|
| 211 |
+
209,enteric neuron
|
| 212 |
+
210,luminal epithelial cell of mammary gland
|
| 213 |
+
211,microcirculation associated smooth muscle cell
|
| 214 |
+
212,tendon cell
|
| 215 |
+
213,lamp5 GABAergic cortical interneuron
|
| 216 |
+
214,Bergmann glial cell
|
| 217 |
+
215,IgG-negative class switched memory B cell
|
| 218 |
+
216,neutrophil
|
| 219 |
+
217,non-pigmented ciliary epithelial cell
|
| 220 |
+
218,"ILC1, human"
|
| 221 |
+
219,OFF midget ganglion cell
|
| 222 |
+
220,mesothelial cell of pleura
|
| 223 |
+
221,anterior lens cell
|
| 224 |
+
222,GABAergic amacrine cell
|
| 225 |
+
223,flat midget bipolar cell
|
| 226 |
+
224,fibro/adipogenic progenitor cell
|
| 227 |
+
225,bronchiolar smooth muscle cell
|
| 228 |
+
226,renal alpha-intercalated cell
|
| 229 |
+
227,retinal ganglion cell
|
| 230 |
+
228,preosteoblast
|
| 231 |
+
229,memory B cell
|
| 232 |
+
230,progenitor cell
|
| 233 |
+
231,kidney cell
|
| 234 |
+
232,cardiac neuron
|
| 235 |
+
233,mesodermal cell
|
| 236 |
+
234,taste receptor cell
|
| 237 |
+
235,professional antigen presenting cell
|
| 238 |
+
236,"CD8-alpha-beta-positive, alpha-beta intraepithelial T cell"
|
| 239 |
+
237,stromal cell of ovary
|
| 240 |
+
238,sncg GABAergic cortical interneuron
|
| 241 |
+
239,alveolar macrophage
|
| 242 |
+
240,follicular B cell
|
| 243 |
+
241,type I NK T cell
|
| 244 |
+
242,neural cell
|
| 245 |
+
243,T-helper 22 cell
|
| 246 |
+
244,medullary thymic epithelial cell
|
| 247 |
+
245,papillary tips cell
|
| 248 |
+
246,vein endothelial cell of respiratory system
|
| 249 |
+
247,proerythroblast
|
| 250 |
+
248,"CD14-positive, CD16-low monocyte"
|
| 251 |
+
249,respiratory tract multiciliated cell
|
| 252 |
+
250,smooth muscle cell of the brain vasculature
|
| 253 |
+
251,basophil mast progenitor cell
|
| 254 |
+
252,cardiac muscle cell
|
| 255 |
+
253,monocyte-derived dendritic cell
|
| 256 |
+
254,respiratory tract epithelial cell
|
| 257 |
+
255,contractile cell
|
| 258 |
+
256,natural T-regulatory cell
|
| 259 |
+
257,common dendritic progenitor
|
| 260 |
+
258,cortical thymic epithelial cell
|
| 261 |
+
259,"plasmacytoid dendritic cell, human"
|
| 262 |
+
260,immature innate lymphoid cell
|
| 263 |
+
261,class switched memory B cell
|
| 264 |
+
262,fallopian tube secretory epithelial cell
|
| 265 |
+
263,pancreatic epsilon cell
|
| 266 |
+
264,"group 3 innate lymphoid cell, human"
|
| 267 |
+
265,Cajal-Retzius cell
|
| 268 |
+
266,"activated CD8-positive, alpha-beta T cell, human"
|
| 269 |
+
267,transitional stage B cell
|
| 270 |
+
268,hippocampal interneuron
|
| 271 |
+
269,"effector CD4-positive, alpha-beta T cell"
|
| 272 |
+
270,foveolar cell of stomach
|
| 273 |
+
271,pre-conventional dendritic cell
|
| 274 |
+
272,endothelial cell of arteriole
|
| 275 |
+
273,skeletal muscle fiber
|
| 276 |
+
274,mesothelial cell
|
| 277 |
+
275,parasol ganglion cell of retina
|
| 278 |
+
276,endothelial cell of placenta
|
| 279 |
+
277,chondroblast
|
| 280 |
+
278,vestibular dark cell
|
| 281 |
+
279,pro-T cell
|
| 282 |
+
280,sebaceous gland cell
|
| 283 |
+
281,pigmented ciliary epithelial cell
|
| 284 |
+
282,secondary lens fiber
|
| 285 |
+
283,"effector memory CD4-positive, alpha-beta T cell"
|
| 286 |
+
284,epithelial cell of esophagus
|
| 287 |
+
285,endothelial cell of pericentral hepatic sinusoid
|
| 288 |
+
286,"CD8-positive, alpha-beta T cell"
|
| 289 |
+
287,endosteal cell
|
| 290 |
+
288,sst GABAergic cortical interneuron
|
| 291 |
+
289,endothelial cell of respiratory system lymphatic vessel
|
| 292 |
+
290,type L enteroendocrine cell
|
| 293 |
+
291,sebocyte
|
| 294 |
+
292,mature gamma-delta T cell
|
| 295 |
+
293,epithelial cell of prostate
|
| 296 |
+
294,acinar cell of salivary gland
|
| 297 |
+
295,lung interstitial macrophage
|
| 298 |
+
296,enterocyte of epithelium of small intestine
|
| 299 |
+
297,L2/3 intratelencephalic projecting glutamatergic neuron
|
| 300 |
+
298,"CD4-positive, alpha-beta memory T cell"
|
| 301 |
+
299,fraction A pre-pro B cell
|
| 302 |
+
300,pancreatic acinar cell
|
| 303 |
+
301,kidney capillary endothelial cell
|
| 304 |
+
302,myelocyte
|
| 305 |
+
303,BEST4+ enterocyte
|
| 306 |
+
304,pancreatic ductal cell
|
| 307 |
+
305,vascular associated smooth muscle cell
|
| 308 |
+
306,stem cell of epidermis
|
| 309 |
+
307,"central memory CD4-positive, alpha-beta T cell"
|
| 310 |
+
308,hepatoblast
|
| 311 |
+
309,early T lineage precursor
|
| 312 |
+
310,thymic fibroblast type 2
|
| 313 |
+
311,interstitial cell of Cajal
|
| 314 |
+
312,"effector memory CD8-positive, alpha-beta T cell, terminally differentiated"
|
| 315 |
+
313,mature astrocyte
|
| 316 |
+
314,neuro-medullary thymic epithelial cell
|
| 317 |
+
315,polychromatophilic erythroblast
|
| 318 |
+
316,ciliated epithelial cell
|
| 319 |
+
317,Sertoli cell
|
| 320 |
+
318,glomerular endothelial cell
|
| 321 |
+
319,spermatocyte
|
| 322 |
+
320,conjunctival epithelial cell
|
| 323 |
+
321,cell in vitro
|
| 324 |
+
322,smooth muscle fiber of ileum
|
| 325 |
+
323,peritubular myoid cell
|
| 326 |
+
324,midbrain dopaminergic neuron
|
| 327 |
+
325,reticulocyte
|
| 328 |
+
326,luminal hormone-sensing cell of mammary gland
|
| 329 |
+
327,basophil
|
| 330 |
+
328,muscle precursor cell
|
| 331 |
+
329,hepatic pit cell
|
| 332 |
+
330,pro-B cell
|
| 333 |
+
331,epithelial cell of small intestine
|
| 334 |
+
332,ionocyte
|
| 335 |
+
333,mature microglial cell
|
| 336 |
+
334,classical monocyte
|
| 337 |
+
335,suprabasal keratinocyte
|
| 338 |
+
336,erythroid progenitor cell
|
| 339 |
+
337,elicited macrophage
|
| 340 |
+
338,myometrial cell
|
| 341 |
+
339,theca cell
|
| 342 |
+
340,muscle cell
|
| 343 |
+
341,innate lymphoid cell
|
| 344 |
+
342,serous secreting cell
|
| 345 |
+
343,epithelial cell of proximal tubule
|
| 346 |
+
344,mononuclear phagocyte
|
| 347 |
+
345,myo-medullary thymic epithelial cell
|
| 348 |
+
346,parietal cell
|
| 349 |
+
347,retinal progenitor cell
|
| 350 |
+
348,deuterosomal cell
|
| 351 |
+
349,"CD8-alpha-alpha-positive, alpha-beta intraepithelial T cell"
|
| 352 |
+
350,B-1 B cell
|
| 353 |
+
351,peg cell
|
| 354 |
+
352,Merkel cell
|
| 355 |
+
353,multiciliated columnar cell of tracheobronchial tree
|
| 356 |
+
354,"CD16-negative, CD56-bright natural killer cell, human"
|
| 357 |
+
355,leukocyte
|
| 358 |
+
356,S cone cell
|
| 359 |
+
357,respiratory tract hillock cell
|
| 360 |
+
358,secondary lymphoid organ macrophage
|
| 361 |
+
359,B cell
|
| 362 |
+
360,syncytiotrophoblast cell
|
| 363 |
+
361,adipocyte
|
| 364 |
+
362,forebrain radial glial cell
|
| 365 |
+
363,orthochromatic erythroblast
|
| 366 |
+
364,endothelial cell of periportal hepatic sinusoid
|
| 367 |
+
365,midzonal region hepatocyte
|
| 368 |
+
366,cardiac blood vessel endothelial cell
|
| 369 |
+
367,colon epithelial cell
|
| 370 |
+
368,neuroblast (sensu Vertebrata)
|
| 371 |
+
369,kidney interstitial alternatively activated macrophage
|
| 372 |
+
370,germ cell
|
| 373 |
+
371,conventional dendritic cell
|
| 374 |
+
372,hematopoietic precursor cell
|
| 375 |
+
373,enteroglial cell
|
| 376 |
+
374,intrahepatic cholangiocyte
|
| 377 |
+
375,mesenchymal stem cell
|
| 378 |
+
376,ependymal cell
|
| 379 |
+
377,mature B cell
|
| 380 |
+
378,cell of skeletal muscle
|
| 381 |
+
379,glandular secretory epithelial cell
|
| 382 |
+
380,sensory neuron
|
| 383 |
+
381,cardiac mesenchymal cell
|
| 384 |
+
382,pulmonary capillary endothelial cell
|
| 385 |
+
383,myofibroblast cell
|
| 386 |
+
384,articular chondrocyte
|
| 387 |
+
385,intestinal tuft cell
|
| 388 |
+
386,umbrella cell of urothelium
|
| 389 |
+
387,immature alpha-beta T cell
|
| 390 |
+
388,L2/3-6 intratelencephalic projecting glutamatergic neuron
|
| 391 |
+
389,enteroendocrine cell
|
| 392 |
+
390,"CD34-positive, CD56-positive, CD117-positive common innate lymphoid precursor, human"
|
| 393 |
+
391,basal epithelial cell of prostatic duct
|
| 394 |
+
392,macrophage dendritic cell progenitor
|
| 395 |
+
393,connective tissue cell
|
| 396 |
+
394,memory regulatory T cell
|
| 397 |
+
395,mucosal invariant T cell
|
| 398 |
+
396,supporting cell
|
| 399 |
+
397,abnormal cell
|
| 400 |
+
398,double negative thymocyte
|
| 401 |
+
399,promyelocyte
|
| 402 |
+
400,enterocyte of epithelium proper of ileum
|
| 403 |
+
401,interneuron
|
| 404 |
+
402,lung endothelial cell
|
| 405 |
+
403,vasa recta descending limb cell
|
| 406 |
+
404,ON-blue cone bipolar cell
|
| 407 |
+
405,macroglial cell
|
| 408 |
+
406,skeletal muscle satellite cell
|
| 409 |
+
407,diffuse bipolar 3b cell
|
| 410 |
+
408,endothelial cell of lymphatic vessel
|
| 411 |
+
409,kidney collecting duct principal cell
|
| 412 |
+
410,transit amplifying cell of small intestine
|
| 413 |
+
411,MHC-II-positive classical monocyte
|
| 414 |
+
412,smooth muscle cell of prostate
|
| 415 |
+
413,OFFx cell
|
| 416 |
+
414,mature conventional dendritic cell
|
| 417 |
+
415,acinar cell
|
| 418 |
+
416,transit amplifying cell
|
| 419 |
+
417,promonocyte
|
| 420 |
+
418,kidney connecting tubule epithelial cell
|
| 421 |
+
419,hypertrophic chondrocyte
|
| 422 |
+
420,vascular lymphangioblast
|
| 423 |
+
421,basal cell of epidermis
|
| 424 |
+
422,astrocyte
|
| 425 |
+
423,IgG plasma cell
|
| 426 |
+
424,L5/6 near-projecting glutamatergic neuron
|
| 427 |
+
425,invaginating midget bipolar cell
|
| 428 |
+
426,fast muscle cell
|
| 429 |
+
427,salivary gland cell
|
| 430 |
+
428,respiratory tract goblet cell
|
| 431 |
+
429,mast cell
|
| 432 |
+
430,fibroblast of choroid plexus
|
| 433 |
+
431,keratinizing barrier epithelial cell
|
| 434 |
+
432,bronchial smooth muscle cell
|
| 435 |
+
433,adventitial cell
|
| 436 |
+
434,diffuse bipolar 1 cell
|
| 437 |
+
435,epithelial fate stem cell
|
| 438 |
+
436,centroblast
|
| 439 |
+
437,fibroblast
|
| 440 |
+
438,hematopoietic stem cell
|
| 441 |
+
439,neural crest derived neuron
|
| 442 |
+
440,epithelial cell of stratum germinativum of esophagus
|
| 443 |
+
441,colon endothelial cell
|
| 444 |
+
442,basal cell of prostate epithelium
|
| 445 |
+
443,neuronal receptor cell
|
| 446 |
+
444,plasma cell
|
| 447 |
+
445,dendritic cell
|
| 448 |
+
446,tongue muscle cell
|
| 449 |
+
447,kidney loop of Henle cortical thick ascending limb epithelial cell
|
| 450 |
+
448,medium spiny neuron
|
| 451 |
+
449,endothelial cell of vascular tree
|
| 452 |
+
450,pancreatic PP cell
|
| 453 |
+
451,spermatogonium
|
| 454 |
+
452,myoepithelial cell
|
| 455 |
+
453,progenitor cell of mammary luminal epithelium
|
| 456 |
+
454,pulmonary artery endothelial cell
|
| 457 |
+
455,muscle fibroblast
|
| 458 |
+
456,plasmacytoid dendritic cell
|
| 459 |
+
457,type I muscle cell
|
| 460 |
+
458,amacrine cell
|
| 461 |
+
459,Purkinje cell
|
| 462 |
+
460,transit amplifying cell of colon
|
| 463 |
+
461,epidermal Langerhans cell
|
| 464 |
+
462,hippocampal granule cell
|
| 465 |
+
463,"CD4-positive, alpha-beta T cell"
|
| 466 |
+
464,myeloid dendritic cell
|
| 467 |
+
465,P/D1 enteroendocrine cell
|
| 468 |
+
466,pancreatic stellate cell
|
| 469 |
+
467,GABAergic neuron
|
| 470 |
+
468,ileal goblet cell
|
| 471 |
+
469,enteroendocrine cell of small intestine
|
| 472 |
+
470,Schwann cell precursor
|
| 473 |
+
471,fetal cardiomyocyte
|
| 474 |
+
472,granulosa cell
|
| 475 |
+
473,pulmonary alveolar epithelial cell
|
| 476 |
+
474,"naive thymus-derived CD8-positive, alpha-beta T cell"
|
| 477 |
+
475,microfold cell of epithelium of small intestine
|
| 478 |
+
476,giant bipolar cell
|
| 479 |
+
477,lung microvascular endothelial cell
|
| 480 |
+
478,peptic cell
|
| 481 |
+
479,non-myelinating Schwann cell
|
| 482 |
+
480,"CD8-positive, alpha-beta memory T cell"
|
| 483 |
+
481,serous cell of epithelium of trachea
|
| 484 |
+
482,naive regulatory T cell
|
| 485 |
+
483,L5 extratelencephalic projecting glutamatergic cortical neuron
|
| 486 |
+
484,mucus secreting cell of bronchus submucosal gland
|
| 487 |
+
485,blood cell
|
| 488 |
+
486,pulmonary ionocyte
|
| 489 |
+
487,pulmonary alveolar type 2 cell
|
| 490 |
+
488,naive T cell
|
| 491 |
+
489,Schwann cell
|
| 492 |
+
490,nasal mucosa goblet cell
|
| 493 |
+
491,centrocyte
|
| 494 |
+
492,skeletal muscle myoblast
|
| 495 |
+
493,cerebellar granule cell
|
| 496 |
+
494,mesenchymal cell
|
| 497 |
+
495,colonocyte
|
| 498 |
+
496,IgA plasma cell
|
| 499 |
+
497,glioblast
|
| 500 |
+
498,hepatocyte
|
| 501 |
+
499,pulmonary alveolar type 1 cell
|
| 502 |
+
500,myeloid leukocyte
|
| 503 |
+
501,kidney interstitial cell
|
| 504 |
+
502,podocyte
|
| 505 |
+
503,lactocyte
|
| 506 |
+
504,chandelier pvalb GABAergic cortical interneuron
|
| 507 |
+
505,large pre-B-II cell
|
| 508 |
+
506,tuft cell of colon
|
| 509 |
+
507,interstitial cell of ovary
|
| 510 |
+
508,basal cell
|
| 511 |
+
509,midget ganglion cell of retina
|
| 512 |
+
510,hepatic stellate cell
|
| 513 |
+
511,intermediate cell of urothelium
|
| 514 |
+
512,placental villous trophoblast
|
| 515 |
+
513,tissue-resident macrophage
|
| 516 |
+
514,glomerular capillary endothelial cell
|
| 517 |
+
515,lung multiciliated epithelial cell
|
| 518 |
+
516,hematopoietic oligopotent progenitor cell
|
| 519 |
+
517,cell
|
| 520 |
+
518,group 2 innate lymphoid cell
|
| 521 |
+
519,alpha-beta T cell
|
| 522 |
+
520,lung macrophage
|
| 523 |
+
521,luminal cell of prostate epithelium
|
| 524 |
+
522,radial glial cell
|
| 525 |
+
523,"central memory CD8-positive, alpha-beta T cell"
|
| 526 |
+
524,unswitched memory B cell
|
| 527 |
+
525,basophilic erythroblast
|
| 528 |
+
526,stratified squamous epithelial cell
|
| 529 |
+
527,GABAergic interneuron
|
| 530 |
+
528,malignant cell
|
| 531 |
+
529,regulatory T cell
|
| 532 |
+
530,keratocyte
|
| 533 |
+
531,kidney loop of Henle ascending limb epithelial cell
|
| 534 |
+
532,supporting cell of vestibular epithelium
|
| 535 |
+
533,pvalb GABAergic cortical interneuron
|
| 536 |
+
534,epidermal cell
|
| 537 |
+
535,paneth cell of epithelium of small intestine
|
| 538 |
+
536,"CD8-positive, alpha-beta thymocyte"
|
| 539 |
+
537,medullary thymic epithelial cell type 2
|
| 540 |
+
538,lung secretory cell
|
| 541 |
+
539,H2 horizontal cell
|
| 542 |
+
540,pulmonary interstitial fibroblast
|
| 543 |
+
541,mature NK T cell
|
| 544 |
+
542,bone marrow cell
|
| 545 |
+
543,mature T cell
|
| 546 |
+
544,stromal cell of bone marrow
|
| 547 |
+
545,osteoclast
|
| 548 |
+
546,bronchial epithelial cell
|
| 549 |
+
547,precursor B cell
|
| 550 |
+
548,retinal cone cell
|
| 551 |
+
549,lymphocyte of B lineage
|
| 552 |
+
550,epithelial cell of uterus
|
| 553 |
+
551,decidual cell
|
| 554 |
+
552,"CD4-positive, CD25-positive, alpha-beta regulatory T cell"
|
| 555 |
+
553,alternatively activated macrophage
|
| 556 |
+
554,airway submucosal gland collecting duct epithelial cell
|
| 557 |
+
555,epithelial cell of proximal tubule segment 3
|
| 558 |
+
556,serous secreting cell of bronchus submucosal gland
|
| 559 |
+
557,squamous epithelial cell
|
| 560 |
+
558,kidney loop of Henle descending limb epithelial cell
|
| 561 |
+
559,serous cell of epithelium of bronchus
|
| 562 |
+
560,perineurial cell
|
| 563 |
+
561,cholangiocyte
|
| 564 |
+
562,endocardial cell
|
| 565 |
+
563,mucous neck cell
|
| 566 |
+
564,Hofbauer cell
|
| 567 |
+
565,renal principal cell
|
| 568 |
+
566,vein endothelial cell
|
| 569 |
+
567,vascular leptomeningeal cell
|
| 570 |
+
568,T cell
|
| 571 |
+
569,"erythroid progenitor cell, mammalian"
|
| 572 |
+
570,intestinal epithelial cell
|
| 573 |
+
571,glandular cell of esophagus
|
| 574 |
+
572,retinal blood vessel endothelial cell
|
| 575 |
+
573,fibroblast of connective tissue of nonglandular part of prostate
|
| 576 |
+
574,smooth muscle cell
|
| 577 |
+
575,type G enteroendocrine cell
|
| 578 |
+
576,tuft cell of small intestine
|
| 579 |
+
577,epithelial cell of lung
|
| 580 |
+
578,mature alpha-beta T cell
|
| 581 |
+
579,primary cultured cell
|
| 582 |
+
580,precursor cell
|
| 583 |
+
581,chondrocyte
|
| 584 |
+
582,starburst amacrine cell
|
| 585 |
+
583,tonsil germinal center B cell
|
| 586 |
+
584,pulmonary neuroendocrine cell
|
| 587 |
+
585,astrocyte of the cerebral cortex
|
| 588 |
+
586,lung pericyte
|
| 589 |
+
587,extracellular matrix secreting cell
|
| 590 |
+
588,T follicular regulatory cell
|
| 591 |
+
589,paneth cell of colon
|
| 592 |
+
590,intestine goblet cell
|
| 593 |
+
591,neuron
|
| 594 |
+
592,alveolar capillary type 1 endothelial cell
|
| 595 |
+
593,"myeloid dendritic cell, human"
|
| 596 |
+
594,early lymphoid progenitor
|
| 597 |
+
595,"activated CD8-positive, alpha-beta T cell"
|
| 598 |
+
596,colon macrophage
|
| 599 |
+
597,uterine smooth muscle cell
|
| 600 |
+
598,oligodendrocyte precursor cell
|
| 601 |
+
599,myoepithelial cell of bronchus submucosal gland
|
| 602 |
+
600,collagen secreting cell
|
| 603 |
+
601,pancreatic D cell
|
| 604 |
+
602,epithelial cell of thymus
|
| 605 |
+
603,small intestine goblet cell
|
| 606 |
+
604,brush cell of tracheobronchial tree
|
| 607 |
+
605,enucleated reticulocyte
|
| 608 |
+
606,multiciliated epithelial cell
|
| 609 |
+
607,ON parasol ganglion cell
|
| 610 |
+
608,enterochromaffin-like cell
|
| 611 |
+
609,melanocyte
|
| 612 |
+
610,"naive thymus-derived CD4-positive, alpha-beta T cell"
|
| 613 |
+
611,retinal bipolar neuron
|
| 614 |
+
612,"CD8-positive, alpha-beta regulatory T cell"
|
| 615 |
+
613,neuron associated cell
|
| 616 |
+
614,oocyte
|
| 617 |
+
615,kidney distal convoluted tubule epithelial cell
|
| 618 |
+
616,mesothelial cell of epicardium
|
| 619 |
+
617,T follicular helper cell
|
| 620 |
+
618,early pro-B cell
|
| 621 |
+
619,ON-bipolar cell
|
| 622 |
+
620,columnar/cuboidal epithelial cell
|
| 623 |
+
621,granulocyte monocyte progenitor cell
|
| 624 |
+
622,gut endothelial cell
|
| 625 |
+
623,microglial cell
|
| 626 |
+
624,exhausted T cell
|
| 627 |
+
625,fibroblast of breast
|
| 628 |
+
626,tracheobronchial serous cell
|
| 629 |
+
627,"activated CD4-positive, alpha-beta T cell, human"
|
| 630 |
+
628,hippocampal astrocyte
|
| 631 |
+
629,"effector memory CD8-positive, alpha-beta T cell"
|
| 632 |
+
630,endothelial cell of hepatic sinusoid
|
| 633 |
+
631,bronchus fibroblast of lung
|
| 634 |
+
632,retinal pigment epithelial cell
|
| 635 |
+
633,corticothalamic-projecting glutamatergic cortical neuron
|
| 636 |
+
634,vasa recta ascending limb cell
|
| 637 |
+
635,paneth cell
|
| 638 |
+
636,erythrocyte
|
| 639 |
+
637,type B pancreatic cell
|
| 640 |
+
638,mesenchymal stem cell of adipose tissue
|
| 641 |
+
639,macrophage
|
| 642 |
+
640,hematopoietic cell
|
| 643 |
+
641,enterocyte of epithelium proper of duodenum
|
| 644 |
+
642,mesothelial fibroblast
|
| 645 |
+
643,inflammatory macrophage
|
| 646 |
+
644,"activated CD4-positive, alpha-beta T cell"
|
| 647 |
+
645,prickle cell
|
| 648 |
+
646,endocrine cell
|
| 649 |
+
647,diffuse bipolar 2 cell
|
| 650 |
+
648,embryonic fibroblast
|
| 651 |
+
649,IgG memory B cell
|
| 652 |
+
650,rod bipolar cell
|
| 653 |
+
651,"CD4-positive, alpha-beta cytotoxic T cell"
|
| 654 |
+
652,enterocyte of epithelium proper of jejunum
|
| 655 |
+
653,prostate gland microvascular endothelial cell
|
| 656 |
+
654,hippocampal pyramidal neuron
|
| 657 |
+
655,central nervous system macrophage
|
| 658 |
+
656,lens epithelial cell
|
| 659 |
+
657,renal intercalated cell
|
| 660 |
+
658,mucus secreting cell of tracheobronchial tree submucosal gland
|
| 661 |
+
659,duct epithelial cell
|
| 662 |
+
660,capillary endothelial cell
|
| 663 |
+
661,"CD4-positive, alpha-beta thymocyte"
|
| 664 |
+
662,hematopoietic multipotent progenitor cell
|
| 665 |
+
663,immature Schwann cell
|
| 666 |
+
664,epithelial cell
|
| 667 |
+
665,secretory cell
|
| 668 |
+
666,retina horizontal cell
|
| 669 |
+
667,immature neutrophil
|
| 670 |
+
668,kidney resident macrophage
|
| 671 |
+
669,centrilobular region hepatocyte
|
| 672 |
+
670,"CD4-negative, CD8-negative, alpha-beta intraepithelial T cell"
|
| 673 |
+
671,extravillous trophoblast
|
| 674 |
+
672,fibroblast of mammary gland
|
| 675 |
+
673,B-2 B cell
|
| 676 |
+
674,retinal rod cell
|
| 677 |
+
675,enterocyte
|
| 678 |
+
676,hair follicular keratinocyte
|
| 679 |
+
677,gamma-delta T cell
|
| 680 |
+
678,blood vessel smooth muscle cell
|
| 681 |
+
679,peripheral nervous system neuron
|
| 682 |
+
680,renal interstitial pericyte
|
| 683 |
+
681,parietal epithelial cell
|
| 684 |
+
682,natural killer cell
|
| 685 |
+
683,pigmented epithelial cell
|
| 686 |
+
684,follicular dendritic cell
|
| 687 |
+
685,large intestine goblet cell
|
| 688 |
+
686,epithelial cell of pancreas
|
| 689 |
+
687,lung megakaryocyte
|
| 690 |
+
688,regular atrial cardiac myocyte
|
| 691 |
+
689,epithelial cell of stomach
|
| 692 |
+
690,melanocyte of skin
|
| 693 |
+
691,brush cell
|
| 694 |
+
692,bladder urothelial cell
|
| 695 |
+
693,cerebral cortex neuron
|
| 696 |
+
694,corticomedullary thymic epithelial cell
|
| 697 |
+
695,neuron of the forebrain
|
| 698 |
+
696,H1 horizontal cell
|
| 699 |
+
697,near-projecting glutamatergic cortical neuron
|
layer_sizes.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"network.0.1.weight": [1024, 28231], "network.0.1.bias": [1024], "network.0.2.weight": [1024], "network.0.2.bias": [1024], "network.0.2.running_mean": [1024], "network.0.2.running_var": [1024], "network.0.2.num_batches_tracked": [], "network.0.3.weight": [1], "network.1.1.weight": [1024, 1024], "network.1.1.bias": [1024], "network.1.2.weight": [1024], "network.1.2.bias": [1024], "network.1.2.running_mean": [1024], "network.1.2.running_var": [1024], "network.1.2.num_batches_tracked": [], "network.1.3.weight": [1], "network.2.1.weight": [1024, 1024], "network.2.1.bias": [1024], "network.2.2.weight": [1024], "network.2.2.bias": [1024], "network.2.2.running_mean": [1024], "network.2.2.running_var": [1024], "network.2.2.num_batches_tracked": [], "network.2.3.weight": [1], "network.3.weight": [128, 1024], "network.3.bias": [128]}
|
metadata.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"date": "2025-04-23 13:06:56", "train_path": "/data1/peerd/ibrahih3/cellXgene/scimilarity_data/train/", "val_path": null}
|