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e7dc055 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 | #!/usr/bin/env bash
set -euo pipefail
AMOS_ROOT=${AMOS_ROOT:-datasets/amos22}
mkdir -p data_json
python tools/create_amos_ct_mr_manifest.py \
--amos-root ${AMOS_ROOT} \
--source ct \
--target mri \
--output data_json/amos_ct2mr.json \
--name amos_ct2mr \
--id-scheme one_based
python tools/remap_labels_in_manifest.py \
--input data_json/amos_ct2mr.json \
--output data_json/amos_ct2mr_shared13.json \
--label-root datasets/amos22_shared13_labels \
--map 14:0 15:0 \
--num-classes 14 \
--protocol-name amos_ct2mr_shared13
python tools/make_sfda_manifest.py \
--input data_json/amos_ct2mr_shared13.json \
--output data_json/amos_ct2mr_shared13_sfda.json \
--drop-splits target_train
python tools/inspect_dataset.py --manifest data_json/amos_ct2mr_shared13_sfda.json
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