Upload Structures25 models
Browse filesSee also https://datadryad.org/dataset/doi:10.5061/dryad.0cfxpnwcs#readme
trained-on-qm9/hparams.yaml
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| 1 |
+
task_name: train
|
| 2 |
+
name: ''
|
| 3 |
+
tags:
|
| 4 |
+
- qm9_perturbed_fock
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| 5 |
+
- kin_plus_xc
|
| 6 |
+
- graphformer
|
| 7 |
+
train: true
|
| 8 |
+
validate: true
|
| 9 |
+
test: false
|
| 10 |
+
ckpt_path: /export/scratch/ialgroup/dft_str25/models/train/runs/009__str25\qm9_tf__seed-100/checkpoints/last.ckpt
|
| 11 |
+
use_original_settings: null
|
| 12 |
+
weight_ckpt_path: null
|
| 13 |
+
seed: 2274360845
|
| 14 |
+
data:
|
| 15 |
+
datamodule:
|
| 16 |
+
_target_: mldft.ml.data.datamodule.OFDataModule
|
| 17 |
+
transforms: ${data.transforms}
|
| 18 |
+
split_file: ${oc.env:DFT_DATA}/${data.dataset_name}/split.pkl
|
| 19 |
+
data_dir: ${oc.env:DFT_DATA}
|
| 20 |
+
basis_info: ${data.basis_info}
|
| 21 |
+
batch_size: 128
|
| 22 |
+
num_workers: 8
|
| 23 |
+
pin_memory: false
|
| 24 |
+
shuffle_train: true
|
| 25 |
+
shuffle_val: false
|
| 26 |
+
shuffle_test: false
|
| 27 |
+
dataset_kwargs:
|
| 28 |
+
add_irreps: true
|
| 29 |
+
cache_in_memory: false
|
| 30 |
+
energy_key: e_${data.target_key}
|
| 31 |
+
gradient_key: grad_${data.target_key}
|
| 32 |
+
limit_scf_iterations:
|
| 33 |
+
- 6
|
| 34 |
+
- 7
|
| 35 |
+
- 8
|
| 36 |
+
- 9
|
| 37 |
+
- 10
|
| 38 |
+
- 11
|
| 39 |
+
- 12
|
| 40 |
+
- 13
|
| 41 |
+
- 14
|
| 42 |
+
- 15
|
| 43 |
+
- 16
|
| 44 |
+
- 17
|
| 45 |
+
- 18
|
| 46 |
+
- 19
|
| 47 |
+
- 20
|
| 48 |
+
- 21
|
| 49 |
+
- 22
|
| 50 |
+
- 23
|
| 51 |
+
- 24
|
| 52 |
+
- 25
|
| 53 |
+
- 26
|
| 54 |
+
- -1
|
| 55 |
+
keep_initial_guess: false
|
| 56 |
+
dataloader_kwargs:
|
| 57 |
+
follow_batch:
|
| 58 |
+
- coeffs
|
| 59 |
+
- atomic_numbers
|
| 60 |
+
list_keys: null
|
| 61 |
+
transforms:
|
| 62 |
+
cached_transforms:
|
| 63 |
+
name: local_frames_global_${data.natural_reparametrization.orthogonalization}_natrep
|
| 64 |
+
additional_pre_transforms:
|
| 65 |
+
- _target_: mldft.ml.data.components.convert_transforms.AddOverlapMatrix
|
| 66 |
+
basis_info: ${data.basis_info}
|
| 67 |
+
transforms:
|
| 68 |
+
- _target_: mldft.ml.data.components.basis_transforms.ToLocalFrames
|
| 69 |
+
sparse: false
|
| 70 |
+
- _target_: mldft.ml.data.components.basis_transforms.ToGlobalNatRep
|
| 71 |
+
orthogonalization: ${data.natural_reparametrization.orthogonalization}
|
| 72 |
+
_target_: mldft.ml.data.components.basis_transforms.MasterTransformation
|
| 73 |
+
name: local_frames_global_${data.natural_reparametrization.orthogonalization}_natrep
|
| 74 |
+
use_cached_data: true
|
| 75 |
+
pre_transforms:
|
| 76 |
+
- _target_: mldft.ml.data.components.convert_transforms.ToTorch
|
| 77 |
+
float_dtype: torch.float64
|
| 78 |
+
- _target_: mldft.ml.data.components.convert_transforms.ProjectGradient
|
| 79 |
+
- _target_: mldft.ml.data.components.convert_transforms.AddFullEdgeIndex
|
| 80 |
+
- _target_: mldft.ml.data.components.basis_transforms.AddLocalFrames
|
| 81 |
+
basis_transforms: []
|
| 82 |
+
post_transforms:
|
| 83 |
+
- _target_: mldft.ml.data.components.convert_transforms.ToTorch
|
| 84 |
+
add_transformation_matrix: false
|
| 85 |
+
target_key: kin_plus_xc
|
| 86 |
+
dataset_statistics:
|
| 87 |
+
_target_: mldft.ml.preprocess.dataset_statistics.DatasetStatistics
|
| 88 |
+
path: ${oc.env:DFT_DATA}/${data.dataset_name}/dataset_statistics/dataset_statistics_labels_${data.transforms.name}_${data.datamodule.dataset_kwargs.energy_key}.zarr
|
| 89 |
+
natural_reparametrization:
|
| 90 |
+
orthogonalization: symmetric
|
| 91 |
+
basis_info:
|
| 92 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 93 |
+
path_to_data_info: ${oc.env:DFT_DATA}/${data.dataset_name}/dataset_info.yaml
|
| 94 |
+
atomic_numbers:
|
| 95 |
+
- 1
|
| 96 |
+
- 6
|
| 97 |
+
- 7
|
| 98 |
+
- 8
|
| 99 |
+
- 9
|
| 100 |
+
cutoff: 6.0
|
| 101 |
+
dataset_name: QM9_perturbed_fock
|
| 102 |
+
model:
|
| 103 |
+
optimizer:
|
| 104 |
+
_target_: torch.optim.AdamW
|
| 105 |
+
_partial_: true
|
| 106 |
+
lr: 7.0e-05
|
| 107 |
+
betas:
|
| 108 |
+
- 0.95
|
| 109 |
+
- 0.99
|
| 110 |
+
weight_decay: 1.0e-10
|
| 111 |
+
loss_function:
|
| 112 |
+
_target_: mldft.ml.models.components.loss_function.WeightedLoss
|
| 113 |
+
energy_loss:
|
| 114 |
+
weight: 0.1
|
| 115 |
+
loss:
|
| 116 |
+
_target_: mldft.ml.models.components.loss_function.EnergyLoss
|
| 117 |
+
loss_function:
|
| 118 |
+
_target_: torch.nn.L1Loss
|
| 119 |
+
reduction: none
|
| 120 |
+
sample_weigher:
|
| 121 |
+
_target_: mldft.ml.models.components.sample_weighers.HasEnergyLabelSampleWeigher
|
| 122 |
+
gradient_loss:
|
| 123 |
+
weight: 0.9
|
| 124 |
+
loss:
|
| 125 |
+
_target_: mldft.ml.models.components.loss_function.EnergyGradientLoss
|
| 126 |
+
loss_function:
|
| 127 |
+
_target_: torch.nn.L1Loss
|
| 128 |
+
reduction: none
|
| 129 |
+
sample_weigher:
|
| 130 |
+
_target_: mldft.ml.models.components.sample_weighers.HasEnergyLabelSampleWeigher
|
| 131 |
+
coefficient_loss:
|
| 132 |
+
weight: 0
|
| 133 |
+
loss:
|
| 134 |
+
_target_: mldft.ml.models.components.loss_function.CoefficientLoss
|
| 135 |
+
loss_function:
|
| 136 |
+
_target_: torch.nn.L1Loss
|
| 137 |
+
reduction: none
|
| 138 |
+
sample_weigher: null
|
| 139 |
+
scheduler:
|
| 140 |
+
_target_: torch.optim.lr_scheduler.CosineAnnealingLR
|
| 141 |
+
_partial_: true
|
| 142 |
+
T_max: ${trainer.max_epochs}
|
| 143 |
+
eta_min: 0
|
| 144 |
+
last_epoch: -1
|
| 145 |
+
_target_: mldft.ml.models.mldft_module.MLDFTLitModule
|
| 146 |
+
variational: true
|
| 147 |
+
target_key: ${data.target_key}
|
| 148 |
+
compile: false
|
| 149 |
+
basis_info: ${data.basis_info}
|
| 150 |
+
metric_interval: 1
|
| 151 |
+
logging_mixin_interval: 1000
|
| 152 |
+
show_logging_mixins_in_progress_bar: false
|
| 153 |
+
net:
|
| 154 |
+
_target_: mldft.ml.models.components.graphformer.Graphformer
|
| 155 |
+
edge_mlp:
|
| 156 |
+
_target_: mldft.ml.models.components.mlp.MLP
|
| 157 |
+
in_channels: 128
|
| 158 |
+
hidden_channels:
|
| 159 |
+
- 768
|
| 160 |
+
- 32
|
| 161 |
+
activation_layer:
|
| 162 |
+
_target_: hydra.utils.get_class
|
| 163 |
+
path: torch.nn.SiLU
|
| 164 |
+
dropout: 0.0
|
| 165 |
+
energy_mlp:
|
| 166 |
+
_target_: mldft.ml.models.components.mlp.MLP
|
| 167 |
+
in_channels: 768
|
| 168 |
+
hidden_channels:
|
| 169 |
+
- 768
|
| 170 |
+
- 1
|
| 171 |
+
activation_layer:
|
| 172 |
+
_target_: hydra.utils.get_class
|
| 173 |
+
path: torch.nn.SiLU
|
| 174 |
+
dropout: 0.0
|
| 175 |
+
disable_dropout_last_layer: true
|
| 176 |
+
disable_activation_last_layer: true
|
| 177 |
+
disable_norm_last_layer: true
|
| 178 |
+
gbf_module:
|
| 179 |
+
_target_: mldft.ml.models.components.gbf_module.GaussianLayer
|
| 180 |
+
basis_info: ${data.basis_info}
|
| 181 |
+
num_gaussians: 128
|
| 182 |
+
init_radius_range:
|
| 183 |
+
- 0
|
| 184 |
+
- 3
|
| 185 |
+
directed: true
|
| 186 |
+
normalized: true
|
| 187 |
+
node_embedding_module:
|
| 188 |
+
_target_: mldft.ml.models.components.node_embedding.NodeEmbedding.from_basis_info
|
| 189 |
+
basis_info: ${data.basis_info}
|
| 190 |
+
out_channels: 768
|
| 191 |
+
dst_in_channels: 128
|
| 192 |
+
p_hidden_channels: 768
|
| 193 |
+
p_num_layers: 3
|
| 194 |
+
p_activation:
|
| 195 |
+
_target_: hydra.utils.get_class
|
| 196 |
+
path: torch.nn.GELU
|
| 197 |
+
p_dropout: 0.0
|
| 198 |
+
dst_hidden_channels: 768
|
| 199 |
+
dst_num_layers: 3
|
| 200 |
+
dst_activation:
|
| 201 |
+
_target_: hydra.utils.get_class
|
| 202 |
+
path: torch.nn.GELU
|
| 203 |
+
dst_dropout: 0.0
|
| 204 |
+
lambda_co: 10.0
|
| 205 |
+
lambda_mul: 0.02
|
| 206 |
+
use_per_basis_func_shrink_gate: true
|
| 207 |
+
cutoff: null
|
| 208 |
+
gnn_module:
|
| 209 |
+
_target_: mldft.ml.models.components.g3d_stack.G3DStack
|
| 210 |
+
g3d_class:
|
| 211 |
+
_partial_: true
|
| 212 |
+
_target_: mldft.ml.models.components.g3d_layer_tf.G3DLayerTF
|
| 213 |
+
in_reps:
|
| 214 |
+
_target_: tensorframes.reps.Irreps
|
| 215 |
+
irreps: 513x0+85x1
|
| 216 |
+
n_layers: 4
|
| 217 |
+
heads: 32
|
| 218 |
+
edge_dim: 1
|
| 219 |
+
dropout: 0.0
|
| 220 |
+
attention_weight_dropout: 0.0
|
| 221 |
+
mlp_hidden_dim: null
|
| 222 |
+
mlp_activation:
|
| 223 |
+
_target_: hydra.utils.get_class
|
| 224 |
+
path: torch.nn.GELU
|
| 225 |
+
norm_layer_class:
|
| 226 |
+
_target_: torch_geometric.nn.norm.layer_norm.LayerNorm
|
| 227 |
+
_partial_: true
|
| 228 |
+
mode: node
|
| 229 |
+
activation_dropout: 0.0
|
| 230 |
+
cutoff: null
|
| 231 |
+
atom_ref_module:
|
| 232 |
+
_target_: mldft.ml.models.components.atom_ref.AtomRef.from_dataset_statistics
|
| 233 |
+
dataset_statistics: ${data.dataset_statistics}
|
| 234 |
+
weigher_key: has_energy_label
|
| 235 |
+
initial_guess_module:
|
| 236 |
+
_target_: mldft.ml.models.components.initial_guess_delta_module.InitialGuessDeltaModule
|
| 237 |
+
input_size: 768
|
| 238 |
+
basis_info: ${data.basis_info}
|
| 239 |
+
dataset_statistics: ${data.dataset_statistics}
|
| 240 |
+
weigher_key: initial_guess_only
|
| 241 |
+
activation_function:
|
| 242 |
+
_target_: hydra.utils.get_class
|
| 243 |
+
path: torch.nn.GELU
|
| 244 |
+
hidden_layers:
|
| 245 |
+
- 768
|
| 246 |
+
dropout: 0.0
|
| 247 |
+
dimension_wise_rescaling_module:
|
| 248 |
+
_target_: mldft.ml.models.components.dimension_wise_rescaling.DimensionWiseRescaling.from_dataset_statistics
|
| 249 |
+
dataset_statistics: ${data.dataset_statistics}
|
| 250 |
+
weigher_key: has_energy_label
|
| 251 |
+
s_coeff: 50
|
| 252 |
+
s_grad: 0.05
|
| 253 |
+
epsilon: 1.0e-08
|
| 254 |
+
callbacks:
|
| 255 |
+
learning_rate_monitor:
|
| 256 |
+
_target_: lightning.pytorch.callbacks.LearningRateMonitor
|
| 257 |
+
model_checkpoint:
|
| 258 |
+
_target_: mldft.ml.callbacks.checkpoint.ModelCheckpointWithPermissions
|
| 259 |
+
dirpath: ${paths.output_dir}/checkpoints
|
| 260 |
+
filename: epoch_{epoch:03d}
|
| 261 |
+
monitor: val_loss/total
|
| 262 |
+
verbose: false
|
| 263 |
+
save_last: true
|
| 264 |
+
save_top_k: 1
|
| 265 |
+
mode: min
|
| 266 |
+
auto_insert_metric_name: false
|
| 267 |
+
save_weights_only: false
|
| 268 |
+
every_n_train_steps: null
|
| 269 |
+
train_time_interval: null
|
| 270 |
+
every_n_epochs: null
|
| 271 |
+
save_on_train_epoch_end: null
|
| 272 |
+
model_summary:
|
| 273 |
+
_target_: mldft.ml.callbacks.SubModelSummary
|
| 274 |
+
max_depth: -1
|
| 275 |
+
path_in_model: net
|
| 276 |
+
rich_progress_bar:
|
| 277 |
+
_target_: lightning.pytorch.callbacks.RichProgressBar
|
| 278 |
+
print_overrides:
|
| 279 |
+
_target_: mldft.ml.callbacks.PrintOverrides
|
| 280 |
+
compact: false
|
| 281 |
+
target_pred_scatters:
|
| 282 |
+
_target_: mldft.ml.callbacks.image_logging.LogTargetPredScatters
|
| 283 |
+
with_atom_ref: auto
|
| 284 |
+
train_timing:
|
| 285 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 286 |
+
initial_interval: ${callbacks.interval}
|
| 287 |
+
val_timing:
|
| 288 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 289 |
+
initial_interval: ${callbacks.interval}
|
| 290 |
+
gradient_scatter:
|
| 291 |
+
_target_: mldft.ml.callbacks.image_logging.LogGradientScatter
|
| 292 |
+
train_timing:
|
| 293 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 294 |
+
initial_interval: ${callbacks.interval}
|
| 295 |
+
val_timing:
|
| 296 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 297 |
+
initial_interval: ${callbacks.interval}
|
| 298 |
+
distance_embeddings:
|
| 299 |
+
_target_: mldft.ml.callbacks.image_logging.LogDistanceEmbeddings
|
| 300 |
+
max_distance: 8.0
|
| 301 |
+
n_distances: 1000
|
| 302 |
+
train_timing:
|
| 303 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 304 |
+
initial_interval: ${callbacks.interval}
|
| 305 |
+
val_timing:
|
| 306 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 307 |
+
initial_interval: ${callbacks.interval}
|
| 308 |
+
molecule_mesh_logging:
|
| 309 |
+
log_initial_guess: true
|
| 310 |
+
log_gradient: true
|
| 311 |
+
log_random_basis_functions: false
|
| 312 |
+
_target_: mldft.ml.callbacks.mesh_logging.LogMolecule
|
| 313 |
+
train_timing:
|
| 314 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 315 |
+
initial_interval: ${callbacks.interval}
|
| 316 |
+
val_timing:
|
| 317 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 318 |
+
initial_interval: ${callbacks.interval}
|
| 319 |
+
custom_scalars:
|
| 320 |
+
_target_: mldft.ml.callbacks.custom_scalars.AddMetricAndLossCustomScalars
|
| 321 |
+
interval: 1000
|
| 322 |
+
logger:
|
| 323 |
+
tensorboard:
|
| 324 |
+
_target_: lightning.pytorch.loggers.tensorboard.TensorBoardLogger
|
| 325 |
+
save_dir: ${paths.output_dir}
|
| 326 |
+
max_queue: 10000
|
| 327 |
+
name: null
|
| 328 |
+
log_graph: false
|
| 329 |
+
default_hp_metric: false
|
| 330 |
+
prefix: ''
|
| 331 |
+
version: ''
|
| 332 |
+
trainer:
|
| 333 |
+
_target_: lightning.pytorch.trainer.Trainer
|
| 334 |
+
default_root_dir: ${paths.output_dir}
|
| 335 |
+
min_epochs: 1
|
| 336 |
+
max_epochs: 90
|
| 337 |
+
log_every_n_steps: 200
|
| 338 |
+
inference_mode: false
|
| 339 |
+
accelerator: auto
|
| 340 |
+
devices: 1
|
| 341 |
+
precision: 32
|
| 342 |
+
check_val_every_n_epoch: 1
|
| 343 |
+
deterministic: false
|
| 344 |
+
paths:
|
| 345 |
+
root_dir: ${oc.env:PROJECT_ROOT}
|
| 346 |
+
data_dir: ${oc.env:DFT_DATA}
|
| 347 |
+
log_dir: ${oc.env:DFT_MODELS}
|
| 348 |
+
output_dir: ${hydra:runtime.output_dir}
|
| 349 |
+
work_dir: ${hydra:runtime.cwd}
|
| 350 |
+
extras:
|
| 351 |
+
ignore_warnings: false
|
| 352 |
+
enforce_tags: true
|
| 353 |
+
print_config: true
|
| 354 |
+
hostname: compgpu7
|
| 355 |
+
local: {}
|
| 356 |
+
git:
|
| 357 |
+
sha: 0dbf4dcea9857269d00de317042686c330a76403
|
| 358 |
+
branch: change_tensorframes_version
|
| 359 |
+
is_dirty: false
|
trained-on-qm9/hparams_resolved.yaml
ADDED
|
@@ -0,0 +1,444 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
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|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
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|
|
|
|
|
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|
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|
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|
|
|
|
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|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
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|
|
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|
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|
|
|
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|
|
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|
|
|
|
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|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
task_name: train
|
| 2 |
+
name: ''
|
| 3 |
+
tags:
|
| 4 |
+
- qm9_perturbed_fock
|
| 5 |
+
- kin_plus_xc
|
| 6 |
+
- graphformer
|
| 7 |
+
train: true
|
| 8 |
+
validate: true
|
| 9 |
+
test: false
|
| 10 |
+
ckpt_path: /export/scratch/ialgroup/dft_str25/models/train/runs/009__str25\qm9_tf__seed-100/checkpoints/last.ckpt
|
| 11 |
+
use_original_settings: null
|
| 12 |
+
weight_ckpt_path: null
|
| 13 |
+
seed: 2274360845
|
| 14 |
+
data:
|
| 15 |
+
datamodule:
|
| 16 |
+
_target_: mldft.ml.data.datamodule.OFDataModule
|
| 17 |
+
transforms:
|
| 18 |
+
cached_transforms:
|
| 19 |
+
name: local_frames_global_symmetric_natrep
|
| 20 |
+
additional_pre_transforms:
|
| 21 |
+
- _target_: mldft.ml.data.components.convert_transforms.AddOverlapMatrix
|
| 22 |
+
basis_info:
|
| 23 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 24 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QM9_perturbed_fock/dataset_info.yaml
|
| 25 |
+
atomic_numbers:
|
| 26 |
+
- 1
|
| 27 |
+
- 6
|
| 28 |
+
- 7
|
| 29 |
+
- 8
|
| 30 |
+
- 9
|
| 31 |
+
transforms:
|
| 32 |
+
- _target_: mldft.ml.data.components.basis_transforms.ToLocalFrames
|
| 33 |
+
sparse: false
|
| 34 |
+
- _target_: mldft.ml.data.components.basis_transforms.ToGlobalNatRep
|
| 35 |
+
orthogonalization: symmetric
|
| 36 |
+
_target_: mldft.ml.data.components.basis_transforms.MasterTransformation
|
| 37 |
+
name: local_frames_global_symmetric_natrep
|
| 38 |
+
use_cached_data: true
|
| 39 |
+
pre_transforms:
|
| 40 |
+
- _target_: mldft.ml.data.components.convert_transforms.ToTorch
|
| 41 |
+
float_dtype: torch.float64
|
| 42 |
+
- _target_: mldft.ml.data.components.convert_transforms.ProjectGradient
|
| 43 |
+
- _target_: mldft.ml.data.components.convert_transforms.AddFullEdgeIndex
|
| 44 |
+
- _target_: mldft.ml.data.components.basis_transforms.AddLocalFrames
|
| 45 |
+
basis_transforms: []
|
| 46 |
+
post_transforms:
|
| 47 |
+
- _target_: mldft.ml.data.components.convert_transforms.ToTorch
|
| 48 |
+
add_transformation_matrix: false
|
| 49 |
+
split_file: /export/scratch/ialgroup/dft_data/QM9_perturbed_fock/split.pkl
|
| 50 |
+
data_dir: /export/scratch/ialgroup/dft_data
|
| 51 |
+
basis_info:
|
| 52 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 53 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QM9_perturbed_fock/dataset_info.yaml
|
| 54 |
+
atomic_numbers:
|
| 55 |
+
- 1
|
| 56 |
+
- 6
|
| 57 |
+
- 7
|
| 58 |
+
- 8
|
| 59 |
+
- 9
|
| 60 |
+
batch_size: 128
|
| 61 |
+
num_workers: 8
|
| 62 |
+
pin_memory: false
|
| 63 |
+
shuffle_train: true
|
| 64 |
+
shuffle_val: false
|
| 65 |
+
shuffle_test: false
|
| 66 |
+
dataset_kwargs:
|
| 67 |
+
add_irreps: true
|
| 68 |
+
cache_in_memory: false
|
| 69 |
+
energy_key: e_kin_plus_xc
|
| 70 |
+
gradient_key: grad_kin_plus_xc
|
| 71 |
+
limit_scf_iterations:
|
| 72 |
+
- 6
|
| 73 |
+
- 7
|
| 74 |
+
- 8
|
| 75 |
+
- 9
|
| 76 |
+
- 10
|
| 77 |
+
- 11
|
| 78 |
+
- 12
|
| 79 |
+
- 13
|
| 80 |
+
- 14
|
| 81 |
+
- 15
|
| 82 |
+
- 16
|
| 83 |
+
- 17
|
| 84 |
+
- 18
|
| 85 |
+
- 19
|
| 86 |
+
- 20
|
| 87 |
+
- 21
|
| 88 |
+
- 22
|
| 89 |
+
- 23
|
| 90 |
+
- 24
|
| 91 |
+
- 25
|
| 92 |
+
- 26
|
| 93 |
+
- -1
|
| 94 |
+
keep_initial_guess: false
|
| 95 |
+
dataloader_kwargs:
|
| 96 |
+
follow_batch:
|
| 97 |
+
- coeffs
|
| 98 |
+
- atomic_numbers
|
| 99 |
+
list_keys: null
|
| 100 |
+
transforms:
|
| 101 |
+
cached_transforms:
|
| 102 |
+
name: local_frames_global_symmetric_natrep
|
| 103 |
+
additional_pre_transforms:
|
| 104 |
+
- _target_: mldft.ml.data.components.convert_transforms.AddOverlapMatrix
|
| 105 |
+
basis_info:
|
| 106 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 107 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QM9_perturbed_fock/dataset_info.yaml
|
| 108 |
+
atomic_numbers:
|
| 109 |
+
- 1
|
| 110 |
+
- 6
|
| 111 |
+
- 7
|
| 112 |
+
- 8
|
| 113 |
+
- 9
|
| 114 |
+
transforms:
|
| 115 |
+
- _target_: mldft.ml.data.components.basis_transforms.ToLocalFrames
|
| 116 |
+
sparse: false
|
| 117 |
+
- _target_: mldft.ml.data.components.basis_transforms.ToGlobalNatRep
|
| 118 |
+
orthogonalization: symmetric
|
| 119 |
+
_target_: mldft.ml.data.components.basis_transforms.MasterTransformation
|
| 120 |
+
name: local_frames_global_symmetric_natrep
|
| 121 |
+
use_cached_data: true
|
| 122 |
+
pre_transforms:
|
| 123 |
+
- _target_: mldft.ml.data.components.convert_transforms.ToTorch
|
| 124 |
+
float_dtype: torch.float64
|
| 125 |
+
- _target_: mldft.ml.data.components.convert_transforms.ProjectGradient
|
| 126 |
+
- _target_: mldft.ml.data.components.convert_transforms.AddFullEdgeIndex
|
| 127 |
+
- _target_: mldft.ml.data.components.basis_transforms.AddLocalFrames
|
| 128 |
+
basis_transforms: []
|
| 129 |
+
post_transforms:
|
| 130 |
+
- _target_: mldft.ml.data.components.convert_transforms.ToTorch
|
| 131 |
+
add_transformation_matrix: false
|
| 132 |
+
target_key: kin_plus_xc
|
| 133 |
+
dataset_statistics:
|
| 134 |
+
_target_: mldft.ml.preprocess.dataset_statistics.DatasetStatistics
|
| 135 |
+
path: /export/scratch/ialgroup/dft_data/QM9_perturbed_fock/dataset_statistics/dataset_statistics_labels_local_frames_global_symmetric_natrep_e_kin_plus_xc.zarr
|
| 136 |
+
natural_reparametrization:
|
| 137 |
+
orthogonalization: symmetric
|
| 138 |
+
basis_info:
|
| 139 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 140 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QM9_perturbed_fock/dataset_info.yaml
|
| 141 |
+
atomic_numbers:
|
| 142 |
+
- 1
|
| 143 |
+
- 6
|
| 144 |
+
- 7
|
| 145 |
+
- 8
|
| 146 |
+
- 9
|
| 147 |
+
cutoff: 6.0
|
| 148 |
+
dataset_name: QM9_perturbed_fock
|
| 149 |
+
model:
|
| 150 |
+
optimizer:
|
| 151 |
+
_target_: torch.optim.AdamW
|
| 152 |
+
_partial_: true
|
| 153 |
+
lr: 7.0e-05
|
| 154 |
+
betas:
|
| 155 |
+
- 0.95
|
| 156 |
+
- 0.99
|
| 157 |
+
weight_decay: 1.0e-10
|
| 158 |
+
loss_function:
|
| 159 |
+
_target_: mldft.ml.models.components.loss_function.WeightedLoss
|
| 160 |
+
energy_loss:
|
| 161 |
+
weight: 0.1
|
| 162 |
+
loss:
|
| 163 |
+
_target_: mldft.ml.models.components.loss_function.EnergyLoss
|
| 164 |
+
loss_function:
|
| 165 |
+
_target_: torch.nn.L1Loss
|
| 166 |
+
reduction: none
|
| 167 |
+
sample_weigher:
|
| 168 |
+
_target_: mldft.ml.models.components.sample_weighers.HasEnergyLabelSampleWeigher
|
| 169 |
+
gradient_loss:
|
| 170 |
+
weight: 0.9
|
| 171 |
+
loss:
|
| 172 |
+
_target_: mldft.ml.models.components.loss_function.EnergyGradientLoss
|
| 173 |
+
loss_function:
|
| 174 |
+
_target_: torch.nn.L1Loss
|
| 175 |
+
reduction: none
|
| 176 |
+
sample_weigher:
|
| 177 |
+
_target_: mldft.ml.models.components.sample_weighers.HasEnergyLabelSampleWeigher
|
| 178 |
+
coefficient_loss:
|
| 179 |
+
weight: 0
|
| 180 |
+
loss:
|
| 181 |
+
_target_: mldft.ml.models.components.loss_function.CoefficientLoss
|
| 182 |
+
loss_function:
|
| 183 |
+
_target_: torch.nn.L1Loss
|
| 184 |
+
reduction: none
|
| 185 |
+
sample_weigher: null
|
| 186 |
+
scheduler:
|
| 187 |
+
_target_: torch.optim.lr_scheduler.CosineAnnealingLR
|
| 188 |
+
_partial_: true
|
| 189 |
+
T_max: 90
|
| 190 |
+
eta_min: 0
|
| 191 |
+
last_epoch: -1
|
| 192 |
+
_target_: mldft.ml.models.mldft_module.MLDFTLitModule
|
| 193 |
+
variational: true
|
| 194 |
+
target_key: kin_plus_xc
|
| 195 |
+
compile: false
|
| 196 |
+
basis_info:
|
| 197 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 198 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QM9_perturbed_fock/dataset_info.yaml
|
| 199 |
+
atomic_numbers:
|
| 200 |
+
- 1
|
| 201 |
+
- 6
|
| 202 |
+
- 7
|
| 203 |
+
- 8
|
| 204 |
+
- 9
|
| 205 |
+
metric_interval: 1
|
| 206 |
+
logging_mixin_interval: 1000
|
| 207 |
+
show_logging_mixins_in_progress_bar: false
|
| 208 |
+
net:
|
| 209 |
+
_target_: mldft.ml.models.components.graphformer.Graphformer
|
| 210 |
+
edge_mlp:
|
| 211 |
+
_target_: mldft.ml.models.components.mlp.MLP
|
| 212 |
+
in_channels: 128
|
| 213 |
+
hidden_channels:
|
| 214 |
+
- 768
|
| 215 |
+
- 32
|
| 216 |
+
activation_layer:
|
| 217 |
+
_target_: hydra.utils.get_class
|
| 218 |
+
path: torch.nn.SiLU
|
| 219 |
+
dropout: 0.0
|
| 220 |
+
energy_mlp:
|
| 221 |
+
_target_: mldft.ml.models.components.mlp.MLP
|
| 222 |
+
in_channels: 768
|
| 223 |
+
hidden_channels:
|
| 224 |
+
- 768
|
| 225 |
+
- 1
|
| 226 |
+
activation_layer:
|
| 227 |
+
_target_: hydra.utils.get_class
|
| 228 |
+
path: torch.nn.SiLU
|
| 229 |
+
dropout: 0.0
|
| 230 |
+
disable_dropout_last_layer: true
|
| 231 |
+
disable_activation_last_layer: true
|
| 232 |
+
disable_norm_last_layer: true
|
| 233 |
+
gbf_module:
|
| 234 |
+
_target_: mldft.ml.models.components.gbf_module.GaussianLayer
|
| 235 |
+
basis_info:
|
| 236 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 237 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QM9_perturbed_fock/dataset_info.yaml
|
| 238 |
+
atomic_numbers:
|
| 239 |
+
- 1
|
| 240 |
+
- 6
|
| 241 |
+
- 7
|
| 242 |
+
- 8
|
| 243 |
+
- 9
|
| 244 |
+
num_gaussians: 128
|
| 245 |
+
init_radius_range:
|
| 246 |
+
- 0
|
| 247 |
+
- 3
|
| 248 |
+
directed: true
|
| 249 |
+
normalized: true
|
| 250 |
+
node_embedding_module:
|
| 251 |
+
_target_: mldft.ml.models.components.node_embedding.NodeEmbedding.from_basis_info
|
| 252 |
+
basis_info:
|
| 253 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 254 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QM9_perturbed_fock/dataset_info.yaml
|
| 255 |
+
atomic_numbers:
|
| 256 |
+
- 1
|
| 257 |
+
- 6
|
| 258 |
+
- 7
|
| 259 |
+
- 8
|
| 260 |
+
- 9
|
| 261 |
+
out_channels: 768
|
| 262 |
+
dst_in_channels: 128
|
| 263 |
+
p_hidden_channels: 768
|
| 264 |
+
p_num_layers: 3
|
| 265 |
+
p_activation:
|
| 266 |
+
_target_: hydra.utils.get_class
|
| 267 |
+
path: torch.nn.GELU
|
| 268 |
+
p_dropout: 0.0
|
| 269 |
+
dst_hidden_channels: 768
|
| 270 |
+
dst_num_layers: 3
|
| 271 |
+
dst_activation:
|
| 272 |
+
_target_: hydra.utils.get_class
|
| 273 |
+
path: torch.nn.GELU
|
| 274 |
+
dst_dropout: 0.0
|
| 275 |
+
lambda_co: 10.0
|
| 276 |
+
lambda_mul: 0.02
|
| 277 |
+
use_per_basis_func_shrink_gate: true
|
| 278 |
+
cutoff: null
|
| 279 |
+
gnn_module:
|
| 280 |
+
_target_: mldft.ml.models.components.g3d_stack.G3DStack
|
| 281 |
+
g3d_class:
|
| 282 |
+
_partial_: true
|
| 283 |
+
_target_: mldft.ml.models.components.g3d_layer_tf.G3DLayerTF
|
| 284 |
+
in_reps:
|
| 285 |
+
_target_: tensorframes.reps.Irreps
|
| 286 |
+
irreps: 513x0+85x1
|
| 287 |
+
n_layers: 4
|
| 288 |
+
heads: 32
|
| 289 |
+
edge_dim: 1
|
| 290 |
+
dropout: 0.0
|
| 291 |
+
attention_weight_dropout: 0.0
|
| 292 |
+
mlp_hidden_dim: null
|
| 293 |
+
mlp_activation:
|
| 294 |
+
_target_: hydra.utils.get_class
|
| 295 |
+
path: torch.nn.GELU
|
| 296 |
+
norm_layer_class:
|
| 297 |
+
_target_: torch_geometric.nn.norm.layer_norm.LayerNorm
|
| 298 |
+
_partial_: true
|
| 299 |
+
mode: node
|
| 300 |
+
activation_dropout: 0.0
|
| 301 |
+
cutoff: null
|
| 302 |
+
atom_ref_module:
|
| 303 |
+
_target_: mldft.ml.models.components.atom_ref.AtomRef.from_dataset_statistics
|
| 304 |
+
dataset_statistics:
|
| 305 |
+
_target_: mldft.ml.preprocess.dataset_statistics.DatasetStatistics
|
| 306 |
+
path: /export/scratch/ialgroup/dft_data/QM9_perturbed_fock/dataset_statistics/dataset_statistics_labels_local_frames_global_symmetric_natrep_e_kin_plus_xc.zarr
|
| 307 |
+
weigher_key: has_energy_label
|
| 308 |
+
initial_guess_module:
|
| 309 |
+
_target_: mldft.ml.models.components.initial_guess_delta_module.InitialGuessDeltaModule
|
| 310 |
+
input_size: 768
|
| 311 |
+
basis_info:
|
| 312 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 313 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QM9_perturbed_fock/dataset_info.yaml
|
| 314 |
+
atomic_numbers:
|
| 315 |
+
- 1
|
| 316 |
+
- 6
|
| 317 |
+
- 7
|
| 318 |
+
- 8
|
| 319 |
+
- 9
|
| 320 |
+
dataset_statistics:
|
| 321 |
+
_target_: mldft.ml.preprocess.dataset_statistics.DatasetStatistics
|
| 322 |
+
path: /export/scratch/ialgroup/dft_data/QM9_perturbed_fock/dataset_statistics/dataset_statistics_labels_local_frames_global_symmetric_natrep_e_kin_plus_xc.zarr
|
| 323 |
+
weigher_key: initial_guess_only
|
| 324 |
+
activation_function:
|
| 325 |
+
_target_: hydra.utils.get_class
|
| 326 |
+
path: torch.nn.GELU
|
| 327 |
+
hidden_layers:
|
| 328 |
+
- 768
|
| 329 |
+
dropout: 0.0
|
| 330 |
+
dimension_wise_rescaling_module:
|
| 331 |
+
_target_: mldft.ml.models.components.dimension_wise_rescaling.DimensionWiseRescaling.from_dataset_statistics
|
| 332 |
+
dataset_statistics:
|
| 333 |
+
_target_: mldft.ml.preprocess.dataset_statistics.DatasetStatistics
|
| 334 |
+
path: /export/scratch/ialgroup/dft_data/QM9_perturbed_fock/dataset_statistics/dataset_statistics_labels_local_frames_global_symmetric_natrep_e_kin_plus_xc.zarr
|
| 335 |
+
weigher_key: has_energy_label
|
| 336 |
+
s_coeff: 50
|
| 337 |
+
s_grad: 0.05
|
| 338 |
+
epsilon: 1.0e-08
|
| 339 |
+
callbacks:
|
| 340 |
+
learning_rate_monitor:
|
| 341 |
+
_target_: lightning.pytorch.callbacks.LearningRateMonitor
|
| 342 |
+
model_checkpoint:
|
| 343 |
+
_target_: mldft.ml.callbacks.checkpoint.ModelCheckpointWithPermissions
|
| 344 |
+
dirpath: /export/scratch/ialgroup/dft_str25/models/train/runs/088__from_checkpoint_009__str25\qm9_tf/checkpoints
|
| 345 |
+
filename: epoch_{epoch:03d}
|
| 346 |
+
monitor: val_loss/total
|
| 347 |
+
verbose: false
|
| 348 |
+
save_last: true
|
| 349 |
+
save_top_k: 1
|
| 350 |
+
mode: min
|
| 351 |
+
auto_insert_metric_name: false
|
| 352 |
+
save_weights_only: false
|
| 353 |
+
every_n_train_steps: null
|
| 354 |
+
train_time_interval: null
|
| 355 |
+
every_n_epochs: null
|
| 356 |
+
save_on_train_epoch_end: null
|
| 357 |
+
model_summary:
|
| 358 |
+
_target_: mldft.ml.callbacks.SubModelSummary
|
| 359 |
+
max_depth: -1
|
| 360 |
+
path_in_model: net
|
| 361 |
+
rich_progress_bar:
|
| 362 |
+
_target_: lightning.pytorch.callbacks.RichProgressBar
|
| 363 |
+
print_overrides:
|
| 364 |
+
_target_: mldft.ml.callbacks.PrintOverrides
|
| 365 |
+
compact: false
|
| 366 |
+
target_pred_scatters:
|
| 367 |
+
_target_: mldft.ml.callbacks.image_logging.LogTargetPredScatters
|
| 368 |
+
with_atom_ref: auto
|
| 369 |
+
train_timing:
|
| 370 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 371 |
+
initial_interval: 1000
|
| 372 |
+
val_timing:
|
| 373 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 374 |
+
initial_interval: 1000
|
| 375 |
+
gradient_scatter:
|
| 376 |
+
_target_: mldft.ml.callbacks.image_logging.LogGradientScatter
|
| 377 |
+
train_timing:
|
| 378 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 379 |
+
initial_interval: 1000
|
| 380 |
+
val_timing:
|
| 381 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 382 |
+
initial_interval: 1000
|
| 383 |
+
distance_embeddings:
|
| 384 |
+
_target_: mldft.ml.callbacks.image_logging.LogDistanceEmbeddings
|
| 385 |
+
max_distance: 8.0
|
| 386 |
+
n_distances: 1000
|
| 387 |
+
train_timing:
|
| 388 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 389 |
+
initial_interval: 1000
|
| 390 |
+
val_timing:
|
| 391 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 392 |
+
initial_interval: 1000
|
| 393 |
+
molecule_mesh_logging:
|
| 394 |
+
log_initial_guess: true
|
| 395 |
+
log_gradient: true
|
| 396 |
+
log_random_basis_functions: false
|
| 397 |
+
_target_: mldft.ml.callbacks.mesh_logging.LogMolecule
|
| 398 |
+
train_timing:
|
| 399 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 400 |
+
initial_interval: 1000
|
| 401 |
+
val_timing:
|
| 402 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 403 |
+
initial_interval: 1000
|
| 404 |
+
custom_scalars:
|
| 405 |
+
_target_: mldft.ml.callbacks.custom_scalars.AddMetricAndLossCustomScalars
|
| 406 |
+
interval: 1000
|
| 407 |
+
logger:
|
| 408 |
+
tensorboard:
|
| 409 |
+
_target_: lightning.pytorch.loggers.tensorboard.TensorBoardLogger
|
| 410 |
+
save_dir: /export/scratch/ialgroup/dft_str25/models/train/runs/088__from_checkpoint_009__str25\qm9_tf
|
| 411 |
+
max_queue: 10000
|
| 412 |
+
name: null
|
| 413 |
+
log_graph: false
|
| 414 |
+
default_hp_metric: false
|
| 415 |
+
prefix: ''
|
| 416 |
+
version: ''
|
| 417 |
+
trainer:
|
| 418 |
+
_target_: lightning.pytorch.trainer.Trainer
|
| 419 |
+
default_root_dir: /export/scratch/ialgroup/dft_str25/models/train/runs/088__from_checkpoint_009__str25\qm9_tf
|
| 420 |
+
min_epochs: 1
|
| 421 |
+
max_epochs: 90
|
| 422 |
+
log_every_n_steps: 200
|
| 423 |
+
inference_mode: false
|
| 424 |
+
accelerator: auto
|
| 425 |
+
devices: 1
|
| 426 |
+
precision: 32
|
| 427 |
+
check_val_every_n_epoch: 1
|
| 428 |
+
deterministic: false
|
| 429 |
+
paths:
|
| 430 |
+
root_dir: /export/home/mickler/sciai-dft
|
| 431 |
+
data_dir: /export/scratch/ialgroup/dft_data
|
| 432 |
+
log_dir: /export/scratch/ialgroup/dft_str25/models
|
| 433 |
+
output_dir: /export/scratch/ialgroup/dft_str25/models/train/runs/088__from_checkpoint_009__str25\qm9_tf
|
| 434 |
+
work_dir: /export/home/mickler/sciai-dft
|
| 435 |
+
extras:
|
| 436 |
+
ignore_warnings: false
|
| 437 |
+
enforce_tags: true
|
| 438 |
+
print_config: true
|
| 439 |
+
hostname: compgpu7
|
| 440 |
+
local: {}
|
| 441 |
+
git:
|
| 442 |
+
sha: 0dbf4dcea9857269d00de317042686c330a76403
|
| 443 |
+
branch: change_tensorframes_version
|
| 444 |
+
is_dirty: false
|
trained-on-qm9/trained-on-qm9.ckpt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:9759da26660c619de9c3bbf4c2dc164343ee90e08e22b3fcdcc9682dacb9bd09
|
| 3 |
+
size 224663166
|
trained-on-qmugs/hparams.yaml
ADDED
|
@@ -0,0 +1,366 @@
|
|
|
|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
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|
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|
|
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|
|
|
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|
|
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|
|
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|
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|
|
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|
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|
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|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
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|
|
|
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|
|
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
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|
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|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
task_name: train
|
| 2 |
+
name: ''
|
| 3 |
+
tags:
|
| 4 |
+
- qmugs_bin0_qm9_perturbed_fock
|
| 5 |
+
- kin_plus_xc
|
| 6 |
+
- graphformer
|
| 7 |
+
train: true
|
| 8 |
+
validate: true
|
| 9 |
+
test: false
|
| 10 |
+
ckpt_path: null
|
| 11 |
+
use_original_settings: null
|
| 12 |
+
weight_ckpt_path: /export/scratch/ialgroup/dft_str25/models/train/runs/110__from_checkpoint_063__str25\qmugs_hierarc_tf/checkpoints/last.ckpt
|
| 13 |
+
seed: 292311302
|
| 14 |
+
data:
|
| 15 |
+
datamodule:
|
| 16 |
+
_target_: mldft.ml.data.datamodule.OFDataModule
|
| 17 |
+
transforms: ${data.transforms}
|
| 18 |
+
split_file: ${oc.env:DFT_DATA}/${data.dataset_name}/split.pkl
|
| 19 |
+
data_dir: ${oc.env:DFT_DATA}
|
| 20 |
+
basis_info: ${data.basis_info}
|
| 21 |
+
batch_size: 128
|
| 22 |
+
num_workers: 32
|
| 23 |
+
pin_memory: false
|
| 24 |
+
shuffle_train: true
|
| 25 |
+
shuffle_val: false
|
| 26 |
+
shuffle_test: false
|
| 27 |
+
dataset_kwargs:
|
| 28 |
+
add_irreps: true
|
| 29 |
+
cache_in_memory: false
|
| 30 |
+
energy_key: e_${data.target_key}
|
| 31 |
+
gradient_key: grad_${data.target_key}
|
| 32 |
+
limit_scf_iterations:
|
| 33 |
+
- 6
|
| 34 |
+
- 7
|
| 35 |
+
- 8
|
| 36 |
+
- 9
|
| 37 |
+
- 10
|
| 38 |
+
- 11
|
| 39 |
+
- 12
|
| 40 |
+
- 13
|
| 41 |
+
- 14
|
| 42 |
+
- 15
|
| 43 |
+
- 16
|
| 44 |
+
- 17
|
| 45 |
+
- 18
|
| 46 |
+
- 19
|
| 47 |
+
- 20
|
| 48 |
+
- 21
|
| 49 |
+
- 22
|
| 50 |
+
- 23
|
| 51 |
+
- 24
|
| 52 |
+
- 25
|
| 53 |
+
- 26
|
| 54 |
+
- -1
|
| 55 |
+
keep_initial_guess: false
|
| 56 |
+
dataloader_kwargs:
|
| 57 |
+
follow_batch:
|
| 58 |
+
- coeffs
|
| 59 |
+
- atomic_numbers
|
| 60 |
+
list_keys: null
|
| 61 |
+
transforms:
|
| 62 |
+
cached_transforms:
|
| 63 |
+
name: local_frames_global_${data.natural_reparametrization.orthogonalization}_natrep
|
| 64 |
+
additional_pre_transforms:
|
| 65 |
+
- _target_: mldft.ml.data.components.convert_transforms.AddOverlapMatrix
|
| 66 |
+
basis_info: ${data.basis_info}
|
| 67 |
+
transforms:
|
| 68 |
+
- _target_: mldft.ml.data.components.basis_transforms.ToLocalFrames
|
| 69 |
+
sparse: false
|
| 70 |
+
- _target_: mldft.ml.data.components.basis_transforms.ToGlobalNatRep
|
| 71 |
+
orthogonalization: ${data.natural_reparametrization.orthogonalization}
|
| 72 |
+
_target_: mldft.ml.data.components.basis_transforms.MasterTransformation
|
| 73 |
+
name: local_frames_global_${data.natural_reparametrization.orthogonalization}_natrep
|
| 74 |
+
use_cached_data: true
|
| 75 |
+
pre_transforms:
|
| 76 |
+
- _target_: mldft.ml.data.components.convert_transforms.ToTorch
|
| 77 |
+
float_dtype: torch.float64
|
| 78 |
+
- _target_: mldft.ml.data.components.convert_transforms.ProjectGradient
|
| 79 |
+
- _target_: mldft.ml.data.components.convert_transforms.AddRadiusEdgeIndex
|
| 80 |
+
radius: ${data.cutoff}
|
| 81 |
+
- _target_: mldft.ml.data.components.basis_transforms.AddLocalFrames
|
| 82 |
+
basis_transforms: []
|
| 83 |
+
post_transforms:
|
| 84 |
+
- _target_: mldft.ml.data.components.convert_transforms.ToTorch
|
| 85 |
+
add_transformation_matrix: false
|
| 86 |
+
target_key: kin_plus_xc
|
| 87 |
+
dataset_statistics:
|
| 88 |
+
_target_: mldft.ml.preprocess.dataset_statistics.DatasetStatistics
|
| 89 |
+
path: ${oc.env:DFT_DATA}/${data.dataset_name}/dataset_statistics/dataset_statistics_labels_${data.transforms.name}_${data.datamodule.dataset_kwargs.energy_key}.zarr
|
| 90 |
+
natural_reparametrization:
|
| 91 |
+
orthogonalization: symmetric
|
| 92 |
+
basis_info:
|
| 93 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 94 |
+
path_to_data_info: ${oc.env:DFT_DATA}/${data.dataset_name}/dataset_info.yaml
|
| 95 |
+
atomic_numbers:
|
| 96 |
+
- 1
|
| 97 |
+
- 6
|
| 98 |
+
- 7
|
| 99 |
+
- 8
|
| 100 |
+
- 9
|
| 101 |
+
cutoff: 6.0
|
| 102 |
+
cutoff_start: 0.0
|
| 103 |
+
dataset_name: QMUGSBin0_perturbed_fock
|
| 104 |
+
model:
|
| 105 |
+
optimizer:
|
| 106 |
+
_target_: torch.optim.AdamW
|
| 107 |
+
_partial_: true
|
| 108 |
+
lr: 1.0e-05
|
| 109 |
+
betas:
|
| 110 |
+
- 0.95
|
| 111 |
+
- 0.99
|
| 112 |
+
weight_decay: 1.0e-10
|
| 113 |
+
loss_function:
|
| 114 |
+
_target_: mldft.ml.models.components.loss_function.WeightedLoss
|
| 115 |
+
energy_loss:
|
| 116 |
+
weight: 0.1
|
| 117 |
+
loss:
|
| 118 |
+
_target_: mldft.ml.models.components.loss_function.EnergyLoss
|
| 119 |
+
loss_function:
|
| 120 |
+
_target_: torch.nn.L1Loss
|
| 121 |
+
reduction: none
|
| 122 |
+
sample_weigher:
|
| 123 |
+
_target_: mldft.ml.models.components.sample_weighers.HasEnergyLabelSampleWeigher
|
| 124 |
+
gradient_loss:
|
| 125 |
+
weight: 0.9
|
| 126 |
+
loss:
|
| 127 |
+
_target_: mldft.ml.models.components.loss_function.EnergyGradientLoss
|
| 128 |
+
loss_function:
|
| 129 |
+
_target_: torch.nn.L1Loss
|
| 130 |
+
reduction: none
|
| 131 |
+
sample_weigher:
|
| 132 |
+
_target_: mldft.ml.models.components.sample_weighers.HasEnergyLabelSampleWeigher
|
| 133 |
+
coefficient_loss:
|
| 134 |
+
weight: 0
|
| 135 |
+
loss:
|
| 136 |
+
_target_: mldft.ml.models.components.loss_function.CoefficientLoss
|
| 137 |
+
loss_function:
|
| 138 |
+
_target_: torch.nn.L1Loss
|
| 139 |
+
reduction: none
|
| 140 |
+
sample_weigher: null
|
| 141 |
+
scheduler:
|
| 142 |
+
_target_: torch.optim.lr_scheduler.CosineAnnealingLR
|
| 143 |
+
_partial_: true
|
| 144 |
+
T_max: ${trainer.max_epochs}
|
| 145 |
+
eta_min: 0
|
| 146 |
+
last_epoch: -1
|
| 147 |
+
_target_: mldft.ml.models.mldft_module.MLDFTLitModule
|
| 148 |
+
variational: true
|
| 149 |
+
target_key: ${data.target_key}
|
| 150 |
+
compile: false
|
| 151 |
+
basis_info: ${data.basis_info}
|
| 152 |
+
metric_interval: 1
|
| 153 |
+
logging_mixin_interval: 1000
|
| 154 |
+
show_logging_mixins_in_progress_bar: false
|
| 155 |
+
net:
|
| 156 |
+
_target_: mldft.ml.models.components.graphformer.Graphformer
|
| 157 |
+
edge_mlp:
|
| 158 |
+
_target_: mldft.ml.models.components.mlp.MLP
|
| 159 |
+
in_channels: 128
|
| 160 |
+
hidden_channels:
|
| 161 |
+
- 768
|
| 162 |
+
- 32
|
| 163 |
+
activation_layer:
|
| 164 |
+
_target_: hydra.utils.get_class
|
| 165 |
+
path: torch.nn.SiLU
|
| 166 |
+
dropout: 0.0
|
| 167 |
+
energy_mlp:
|
| 168 |
+
_target_: mldft.ml.models.components.graphformer.MLPStack
|
| 169 |
+
in_channels: 768
|
| 170 |
+
hidden_channels:
|
| 171 |
+
- 768
|
| 172 |
+
- 1
|
| 173 |
+
activation_layer:
|
| 174 |
+
_target_: hydra.utils.get_class
|
| 175 |
+
path: torch.nn.SiLU
|
| 176 |
+
dropout: 0.0
|
| 177 |
+
disable_dropout_last_layer: true
|
| 178 |
+
disable_activation_last_layer: true
|
| 179 |
+
disable_norm_last_layer: true
|
| 180 |
+
mlp_class:
|
| 181 |
+
_partial_: true
|
| 182 |
+
_target_: mldft.ml.models.components.mlp.MLP
|
| 183 |
+
n_mlps: 4
|
| 184 |
+
gbf_module:
|
| 185 |
+
_target_: mldft.ml.models.components.gbf_module.GaussianLayer
|
| 186 |
+
basis_info: ${data.basis_info}
|
| 187 |
+
num_gaussians: 128
|
| 188 |
+
init_radius_range:
|
| 189 |
+
- 0
|
| 190 |
+
- 3
|
| 191 |
+
directed: true
|
| 192 |
+
normalized: true
|
| 193 |
+
node_embedding_module:
|
| 194 |
+
_target_: mldft.ml.models.components.node_embedding.NodeEmbedding.from_basis_info
|
| 195 |
+
basis_info: ${data.basis_info}
|
| 196 |
+
out_channels: 768
|
| 197 |
+
dst_in_channels: 128
|
| 198 |
+
p_hidden_channels: 768
|
| 199 |
+
p_num_layers: 3
|
| 200 |
+
p_activation:
|
| 201 |
+
_target_: hydra.utils.get_class
|
| 202 |
+
path: torch.nn.GELU
|
| 203 |
+
p_dropout: 0.0
|
| 204 |
+
dst_hidden_channels: 768
|
| 205 |
+
dst_num_layers: 3
|
| 206 |
+
dst_activation:
|
| 207 |
+
_target_: hydra.utils.get_class
|
| 208 |
+
path: torch.nn.GELU
|
| 209 |
+
dst_dropout: 0.0
|
| 210 |
+
lambda_co: 10.0
|
| 211 |
+
lambda_mul: 0.02
|
| 212 |
+
use_per_basis_func_shrink_gate: true
|
| 213 |
+
cutoff: null
|
| 214 |
+
gnn_module:
|
| 215 |
+
_target_: mldft.ml.models.components.g3d_stack.G3DStack
|
| 216 |
+
g3d_class:
|
| 217 |
+
_partial_: true
|
| 218 |
+
_target_: mldft.ml.models.components.g3d_layer_tf.G3DLayerTF
|
| 219 |
+
in_reps:
|
| 220 |
+
_target_: tensorframes.reps.Irreps
|
| 221 |
+
irreps: 513x0+85x1
|
| 222 |
+
n_layers: 8
|
| 223 |
+
heads: 32
|
| 224 |
+
edge_dim: 1
|
| 225 |
+
dropout: 0.0
|
| 226 |
+
attention_weight_dropout: 0.0
|
| 227 |
+
mlp_hidden_dim: null
|
| 228 |
+
mlp_activation:
|
| 229 |
+
_target_: hydra.utils.get_class
|
| 230 |
+
path: torch.nn.GELU
|
| 231 |
+
norm_layer_class:
|
| 232 |
+
_target_: torch_geometric.nn.norm.layer_norm.LayerNorm
|
| 233 |
+
_partial_: true
|
| 234 |
+
mode: node
|
| 235 |
+
activation_dropout: 0.0
|
| 236 |
+
cutoff: null
|
| 237 |
+
energy_readout_every: 2
|
| 238 |
+
atom_ref_module:
|
| 239 |
+
_target_: mldft.ml.models.components.atom_ref.AtomRef.from_dataset_statistics
|
| 240 |
+
dataset_statistics: ${data.dataset_statistics}
|
| 241 |
+
weigher_key: has_energy_label
|
| 242 |
+
initial_guess_module:
|
| 243 |
+
_target_: mldft.ml.models.components.initial_guess_delta_module.InitialGuessDeltaModule
|
| 244 |
+
input_size: 768
|
| 245 |
+
basis_info: ${data.basis_info}
|
| 246 |
+
dataset_statistics: ${data.dataset_statistics}
|
| 247 |
+
weigher_key: initial_guess_only
|
| 248 |
+
activation_function:
|
| 249 |
+
_target_: hydra.utils.get_class
|
| 250 |
+
path: torch.nn.GELU
|
| 251 |
+
hidden_layers:
|
| 252 |
+
- 768
|
| 253 |
+
dropout: 0.0
|
| 254 |
+
dimension_wise_rescaling_module:
|
| 255 |
+
_target_: mldft.ml.models.components.dimension_wise_rescaling.DimensionWiseRescaling.from_dataset_statistics
|
| 256 |
+
dataset_statistics: ${data.dataset_statistics}
|
| 257 |
+
weigher_key: has_energy_label
|
| 258 |
+
s_coeff: 50
|
| 259 |
+
s_grad: 0.05
|
| 260 |
+
epsilon: 1.0e-08
|
| 261 |
+
callbacks:
|
| 262 |
+
learning_rate_monitor:
|
| 263 |
+
_target_: lightning.pytorch.callbacks.LearningRateMonitor
|
| 264 |
+
model_checkpoint:
|
| 265 |
+
_target_: mldft.ml.callbacks.checkpoint.ModelCheckpointWithPermissions
|
| 266 |
+
dirpath: ${paths.output_dir}/checkpoints
|
| 267 |
+
filename: epoch_{epoch:03d}
|
| 268 |
+
monitor: val_loss/total
|
| 269 |
+
verbose: false
|
| 270 |
+
save_last: true
|
| 271 |
+
save_top_k: 1
|
| 272 |
+
mode: min
|
| 273 |
+
auto_insert_metric_name: false
|
| 274 |
+
save_weights_only: false
|
| 275 |
+
every_n_train_steps: null
|
| 276 |
+
train_time_interval: null
|
| 277 |
+
every_n_epochs: null
|
| 278 |
+
save_on_train_epoch_end: null
|
| 279 |
+
model_summary:
|
| 280 |
+
_target_: mldft.ml.callbacks.SubModelSummary
|
| 281 |
+
max_depth: -1
|
| 282 |
+
path_in_model: net
|
| 283 |
+
rich_progress_bar:
|
| 284 |
+
_target_: lightning.pytorch.callbacks.RichProgressBar
|
| 285 |
+
print_overrides:
|
| 286 |
+
_target_: mldft.ml.callbacks.PrintOverrides
|
| 287 |
+
compact: false
|
| 288 |
+
target_pred_scatters:
|
| 289 |
+
_target_: mldft.ml.callbacks.image_logging.LogTargetPredScatters
|
| 290 |
+
with_atom_ref: auto
|
| 291 |
+
train_timing:
|
| 292 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 293 |
+
initial_interval: ${callbacks.interval}
|
| 294 |
+
val_timing:
|
| 295 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 296 |
+
initial_interval: ${callbacks.interval}
|
| 297 |
+
gradient_scatter:
|
| 298 |
+
_target_: mldft.ml.callbacks.image_logging.LogGradientScatter
|
| 299 |
+
train_timing:
|
| 300 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 301 |
+
initial_interval: ${callbacks.interval}
|
| 302 |
+
val_timing:
|
| 303 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 304 |
+
initial_interval: ${callbacks.interval}
|
| 305 |
+
distance_embeddings:
|
| 306 |
+
_target_: mldft.ml.callbacks.image_logging.LogDistanceEmbeddings
|
| 307 |
+
max_distance: 8.0
|
| 308 |
+
n_distances: 1000
|
| 309 |
+
train_timing:
|
| 310 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 311 |
+
initial_interval: ${callbacks.interval}
|
| 312 |
+
val_timing:
|
| 313 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 314 |
+
initial_interval: ${callbacks.interval}
|
| 315 |
+
molecule_mesh_logging:
|
| 316 |
+
log_initial_guess: true
|
| 317 |
+
log_gradient: true
|
| 318 |
+
log_random_basis_functions: false
|
| 319 |
+
_target_: mldft.ml.callbacks.mesh_logging.LogMolecule
|
| 320 |
+
train_timing:
|
| 321 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 322 |
+
initial_interval: ${callbacks.interval}
|
| 323 |
+
val_timing:
|
| 324 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 325 |
+
initial_interval: ${callbacks.interval}
|
| 326 |
+
custom_scalars:
|
| 327 |
+
_target_: mldft.ml.callbacks.custom_scalars.AddMetricAndLossCustomScalars
|
| 328 |
+
interval: 1000
|
| 329 |
+
logger:
|
| 330 |
+
tensorboard:
|
| 331 |
+
_target_: lightning.pytorch.loggers.tensorboard.TensorBoardLogger
|
| 332 |
+
save_dir: ${paths.output_dir}
|
| 333 |
+
max_queue: 10000
|
| 334 |
+
name: null
|
| 335 |
+
log_graph: false
|
| 336 |
+
default_hp_metric: false
|
| 337 |
+
prefix: ''
|
| 338 |
+
version: ''
|
| 339 |
+
trainer:
|
| 340 |
+
_target_: lightning.pytorch.trainer.Trainer
|
| 341 |
+
default_root_dir: ${paths.output_dir}
|
| 342 |
+
min_epochs: 1
|
| 343 |
+
max_epochs: 30
|
| 344 |
+
log_every_n_steps: 200
|
| 345 |
+
inference_mode: false
|
| 346 |
+
accelerator: auto
|
| 347 |
+
devices: 1
|
| 348 |
+
precision: 32
|
| 349 |
+
check_val_every_n_epoch: 1
|
| 350 |
+
deterministic: false
|
| 351 |
+
paths:
|
| 352 |
+
root_dir: ${oc.env:PROJECT_ROOT}
|
| 353 |
+
data_dir: ${oc.env:DFT_DATA}
|
| 354 |
+
log_dir: ${oc.env:DFT_MODELS}
|
| 355 |
+
output_dir: ${hydra:runtime.output_dir}
|
| 356 |
+
work_dir: ${hydra:runtime.cwd}
|
| 357 |
+
extras:
|
| 358 |
+
ignore_warnings: false
|
| 359 |
+
enforce_tags: true
|
| 360 |
+
print_config: true
|
| 361 |
+
hostname: compgpu11
|
| 362 |
+
local: {}
|
| 363 |
+
git:
|
| 364 |
+
sha: 58990f9002b6e36eb94f874ccb8dc9a3609236ab
|
| 365 |
+
branch: main
|
| 366 |
+
is_dirty: true
|
trained-on-qmugs/hparams_resolved.yaml
ADDED
|
@@ -0,0 +1,452 @@
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
| 1 |
+
task_name: train
|
| 2 |
+
name: ''
|
| 3 |
+
tags:
|
| 4 |
+
- qmugs_bin0_qm9_perturbed_fock
|
| 5 |
+
- kin_plus_xc
|
| 6 |
+
- graphformer
|
| 7 |
+
train: true
|
| 8 |
+
validate: true
|
| 9 |
+
test: false
|
| 10 |
+
ckpt_path: null
|
| 11 |
+
use_original_settings: null
|
| 12 |
+
weight_ckpt_path: /export/scratch/ialgroup/dft_str25/models/train/runs/110__from_checkpoint_063__str25\qmugs_hierarc_tf/checkpoints/last.ckpt
|
| 13 |
+
seed: 292311302
|
| 14 |
+
data:
|
| 15 |
+
datamodule:
|
| 16 |
+
_target_: mldft.ml.data.datamodule.OFDataModule
|
| 17 |
+
transforms:
|
| 18 |
+
cached_transforms:
|
| 19 |
+
name: local_frames_global_symmetric_natrep
|
| 20 |
+
additional_pre_transforms:
|
| 21 |
+
- _target_: mldft.ml.data.components.convert_transforms.AddOverlapMatrix
|
| 22 |
+
basis_info:
|
| 23 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 24 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QMUGSBin0_perturbed_fock/dataset_info.yaml
|
| 25 |
+
atomic_numbers:
|
| 26 |
+
- 1
|
| 27 |
+
- 6
|
| 28 |
+
- 7
|
| 29 |
+
- 8
|
| 30 |
+
- 9
|
| 31 |
+
transforms:
|
| 32 |
+
- _target_: mldft.ml.data.components.basis_transforms.ToLocalFrames
|
| 33 |
+
sparse: false
|
| 34 |
+
- _target_: mldft.ml.data.components.basis_transforms.ToGlobalNatRep
|
| 35 |
+
orthogonalization: symmetric
|
| 36 |
+
_target_: mldft.ml.data.components.basis_transforms.MasterTransformation
|
| 37 |
+
name: local_frames_global_symmetric_natrep
|
| 38 |
+
use_cached_data: true
|
| 39 |
+
pre_transforms:
|
| 40 |
+
- _target_: mldft.ml.data.components.convert_transforms.ToTorch
|
| 41 |
+
float_dtype: torch.float64
|
| 42 |
+
- _target_: mldft.ml.data.components.convert_transforms.ProjectGradient
|
| 43 |
+
- _target_: mldft.ml.data.components.convert_transforms.AddRadiusEdgeIndex
|
| 44 |
+
radius: 6.0
|
| 45 |
+
- _target_: mldft.ml.data.components.basis_transforms.AddLocalFrames
|
| 46 |
+
basis_transforms: []
|
| 47 |
+
post_transforms:
|
| 48 |
+
- _target_: mldft.ml.data.components.convert_transforms.ToTorch
|
| 49 |
+
add_transformation_matrix: false
|
| 50 |
+
split_file: /export/scratch/ialgroup/dft_data/QMUGSBin0_perturbed_fock/split.pkl
|
| 51 |
+
data_dir: /export/scratch/ialgroup/dft_data
|
| 52 |
+
basis_info:
|
| 53 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 54 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QMUGSBin0_perturbed_fock/dataset_info.yaml
|
| 55 |
+
atomic_numbers:
|
| 56 |
+
- 1
|
| 57 |
+
- 6
|
| 58 |
+
- 7
|
| 59 |
+
- 8
|
| 60 |
+
- 9
|
| 61 |
+
batch_size: 128
|
| 62 |
+
num_workers: 32
|
| 63 |
+
pin_memory: false
|
| 64 |
+
shuffle_train: true
|
| 65 |
+
shuffle_val: false
|
| 66 |
+
shuffle_test: false
|
| 67 |
+
dataset_kwargs:
|
| 68 |
+
add_irreps: true
|
| 69 |
+
cache_in_memory: false
|
| 70 |
+
energy_key: e_kin_plus_xc
|
| 71 |
+
gradient_key: grad_kin_plus_xc
|
| 72 |
+
limit_scf_iterations:
|
| 73 |
+
- 6
|
| 74 |
+
- 7
|
| 75 |
+
- 8
|
| 76 |
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- 9
|
| 77 |
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- 10
|
| 78 |
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- 11
|
| 79 |
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- 12
|
| 80 |
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- 13
|
| 81 |
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- 14
|
| 82 |
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- 15
|
| 83 |
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- 16
|
| 84 |
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- 17
|
| 85 |
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- 18
|
| 86 |
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- 19
|
| 87 |
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- 20
|
| 88 |
+
- 21
|
| 89 |
+
- 22
|
| 90 |
+
- 23
|
| 91 |
+
- 24
|
| 92 |
+
- 25
|
| 93 |
+
- 26
|
| 94 |
+
- -1
|
| 95 |
+
keep_initial_guess: false
|
| 96 |
+
dataloader_kwargs:
|
| 97 |
+
follow_batch:
|
| 98 |
+
- coeffs
|
| 99 |
+
- atomic_numbers
|
| 100 |
+
list_keys: null
|
| 101 |
+
transforms:
|
| 102 |
+
cached_transforms:
|
| 103 |
+
name: local_frames_global_symmetric_natrep
|
| 104 |
+
additional_pre_transforms:
|
| 105 |
+
- _target_: mldft.ml.data.components.convert_transforms.AddOverlapMatrix
|
| 106 |
+
basis_info:
|
| 107 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 108 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QMUGSBin0_perturbed_fock/dataset_info.yaml
|
| 109 |
+
atomic_numbers:
|
| 110 |
+
- 1
|
| 111 |
+
- 6
|
| 112 |
+
- 7
|
| 113 |
+
- 8
|
| 114 |
+
- 9
|
| 115 |
+
transforms:
|
| 116 |
+
- _target_: mldft.ml.data.components.basis_transforms.ToLocalFrames
|
| 117 |
+
sparse: false
|
| 118 |
+
- _target_: mldft.ml.data.components.basis_transforms.ToGlobalNatRep
|
| 119 |
+
orthogonalization: symmetric
|
| 120 |
+
_target_: mldft.ml.data.components.basis_transforms.MasterTransformation
|
| 121 |
+
name: local_frames_global_symmetric_natrep
|
| 122 |
+
use_cached_data: true
|
| 123 |
+
pre_transforms:
|
| 124 |
+
- _target_: mldft.ml.data.components.convert_transforms.ToTorch
|
| 125 |
+
float_dtype: torch.float64
|
| 126 |
+
- _target_: mldft.ml.data.components.convert_transforms.ProjectGradient
|
| 127 |
+
- _target_: mldft.ml.data.components.convert_transforms.AddRadiusEdgeIndex
|
| 128 |
+
radius: 6.0
|
| 129 |
+
- _target_: mldft.ml.data.components.basis_transforms.AddLocalFrames
|
| 130 |
+
basis_transforms: []
|
| 131 |
+
post_transforms:
|
| 132 |
+
- _target_: mldft.ml.data.components.convert_transforms.ToTorch
|
| 133 |
+
add_transformation_matrix: false
|
| 134 |
+
target_key: kin_plus_xc
|
| 135 |
+
dataset_statistics:
|
| 136 |
+
_target_: mldft.ml.preprocess.dataset_statistics.DatasetStatistics
|
| 137 |
+
path: /export/scratch/ialgroup/dft_data/QMUGSBin0_perturbed_fock/dataset_statistics/dataset_statistics_labels_local_frames_global_symmetric_natrep_e_kin_plus_xc.zarr
|
| 138 |
+
natural_reparametrization:
|
| 139 |
+
orthogonalization: symmetric
|
| 140 |
+
basis_info:
|
| 141 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 142 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QMUGSBin0_perturbed_fock/dataset_info.yaml
|
| 143 |
+
atomic_numbers:
|
| 144 |
+
- 1
|
| 145 |
+
- 6
|
| 146 |
+
- 7
|
| 147 |
+
- 8
|
| 148 |
+
- 9
|
| 149 |
+
cutoff: 6.0
|
| 150 |
+
cutoff_start: 0.0
|
| 151 |
+
dataset_name: QMUGSBin0_perturbed_fock
|
| 152 |
+
model:
|
| 153 |
+
optimizer:
|
| 154 |
+
_target_: torch.optim.AdamW
|
| 155 |
+
_partial_: true
|
| 156 |
+
lr: 1.0e-05
|
| 157 |
+
betas:
|
| 158 |
+
- 0.95
|
| 159 |
+
- 0.99
|
| 160 |
+
weight_decay: 1.0e-10
|
| 161 |
+
loss_function:
|
| 162 |
+
_target_: mldft.ml.models.components.loss_function.WeightedLoss
|
| 163 |
+
energy_loss:
|
| 164 |
+
weight: 0.1
|
| 165 |
+
loss:
|
| 166 |
+
_target_: mldft.ml.models.components.loss_function.EnergyLoss
|
| 167 |
+
loss_function:
|
| 168 |
+
_target_: torch.nn.L1Loss
|
| 169 |
+
reduction: none
|
| 170 |
+
sample_weigher:
|
| 171 |
+
_target_: mldft.ml.models.components.sample_weighers.HasEnergyLabelSampleWeigher
|
| 172 |
+
gradient_loss:
|
| 173 |
+
weight: 0.9
|
| 174 |
+
loss:
|
| 175 |
+
_target_: mldft.ml.models.components.loss_function.EnergyGradientLoss
|
| 176 |
+
loss_function:
|
| 177 |
+
_target_: torch.nn.L1Loss
|
| 178 |
+
reduction: none
|
| 179 |
+
sample_weigher:
|
| 180 |
+
_target_: mldft.ml.models.components.sample_weighers.HasEnergyLabelSampleWeigher
|
| 181 |
+
coefficient_loss:
|
| 182 |
+
weight: 0
|
| 183 |
+
loss:
|
| 184 |
+
_target_: mldft.ml.models.components.loss_function.CoefficientLoss
|
| 185 |
+
loss_function:
|
| 186 |
+
_target_: torch.nn.L1Loss
|
| 187 |
+
reduction: none
|
| 188 |
+
sample_weigher: null
|
| 189 |
+
scheduler:
|
| 190 |
+
_target_: torch.optim.lr_scheduler.CosineAnnealingLR
|
| 191 |
+
_partial_: true
|
| 192 |
+
T_max: 30
|
| 193 |
+
eta_min: 0
|
| 194 |
+
last_epoch: -1
|
| 195 |
+
_target_: mldft.ml.models.mldft_module.MLDFTLitModule
|
| 196 |
+
variational: true
|
| 197 |
+
target_key: kin_plus_xc
|
| 198 |
+
compile: false
|
| 199 |
+
basis_info:
|
| 200 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 201 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QMUGSBin0_perturbed_fock/dataset_info.yaml
|
| 202 |
+
atomic_numbers:
|
| 203 |
+
- 1
|
| 204 |
+
- 6
|
| 205 |
+
- 7
|
| 206 |
+
- 8
|
| 207 |
+
- 9
|
| 208 |
+
metric_interval: 1
|
| 209 |
+
logging_mixin_interval: 1000
|
| 210 |
+
show_logging_mixins_in_progress_bar: false
|
| 211 |
+
net:
|
| 212 |
+
_target_: mldft.ml.models.components.graphformer.Graphformer
|
| 213 |
+
edge_mlp:
|
| 214 |
+
_target_: mldft.ml.models.components.mlp.MLP
|
| 215 |
+
in_channels: 128
|
| 216 |
+
hidden_channels:
|
| 217 |
+
- 768
|
| 218 |
+
- 32
|
| 219 |
+
activation_layer:
|
| 220 |
+
_target_: hydra.utils.get_class
|
| 221 |
+
path: torch.nn.SiLU
|
| 222 |
+
dropout: 0.0
|
| 223 |
+
energy_mlp:
|
| 224 |
+
_target_: mldft.ml.models.components.graphformer.MLPStack
|
| 225 |
+
in_channels: 768
|
| 226 |
+
hidden_channels:
|
| 227 |
+
- 768
|
| 228 |
+
- 1
|
| 229 |
+
activation_layer:
|
| 230 |
+
_target_: hydra.utils.get_class
|
| 231 |
+
path: torch.nn.SiLU
|
| 232 |
+
dropout: 0.0
|
| 233 |
+
disable_dropout_last_layer: true
|
| 234 |
+
disable_activation_last_layer: true
|
| 235 |
+
disable_norm_last_layer: true
|
| 236 |
+
mlp_class:
|
| 237 |
+
_partial_: true
|
| 238 |
+
_target_: mldft.ml.models.components.mlp.MLP
|
| 239 |
+
n_mlps: 4
|
| 240 |
+
gbf_module:
|
| 241 |
+
_target_: mldft.ml.models.components.gbf_module.GaussianLayer
|
| 242 |
+
basis_info:
|
| 243 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 244 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QMUGSBin0_perturbed_fock/dataset_info.yaml
|
| 245 |
+
atomic_numbers:
|
| 246 |
+
- 1
|
| 247 |
+
- 6
|
| 248 |
+
- 7
|
| 249 |
+
- 8
|
| 250 |
+
- 9
|
| 251 |
+
num_gaussians: 128
|
| 252 |
+
init_radius_range:
|
| 253 |
+
- 0
|
| 254 |
+
- 3
|
| 255 |
+
directed: true
|
| 256 |
+
normalized: true
|
| 257 |
+
node_embedding_module:
|
| 258 |
+
_target_: mldft.ml.models.components.node_embedding.NodeEmbedding.from_basis_info
|
| 259 |
+
basis_info:
|
| 260 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 261 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QMUGSBin0_perturbed_fock/dataset_info.yaml
|
| 262 |
+
atomic_numbers:
|
| 263 |
+
- 1
|
| 264 |
+
- 6
|
| 265 |
+
- 7
|
| 266 |
+
- 8
|
| 267 |
+
- 9
|
| 268 |
+
out_channels: 768
|
| 269 |
+
dst_in_channels: 128
|
| 270 |
+
p_hidden_channels: 768
|
| 271 |
+
p_num_layers: 3
|
| 272 |
+
p_activation:
|
| 273 |
+
_target_: hydra.utils.get_class
|
| 274 |
+
path: torch.nn.GELU
|
| 275 |
+
p_dropout: 0.0
|
| 276 |
+
dst_hidden_channels: 768
|
| 277 |
+
dst_num_layers: 3
|
| 278 |
+
dst_activation:
|
| 279 |
+
_target_: hydra.utils.get_class
|
| 280 |
+
path: torch.nn.GELU
|
| 281 |
+
dst_dropout: 0.0
|
| 282 |
+
lambda_co: 10.0
|
| 283 |
+
lambda_mul: 0.02
|
| 284 |
+
use_per_basis_func_shrink_gate: true
|
| 285 |
+
cutoff: null
|
| 286 |
+
gnn_module:
|
| 287 |
+
_target_: mldft.ml.models.components.g3d_stack.G3DStack
|
| 288 |
+
g3d_class:
|
| 289 |
+
_partial_: true
|
| 290 |
+
_target_: mldft.ml.models.components.g3d_layer_tf.G3DLayerTF
|
| 291 |
+
in_reps:
|
| 292 |
+
_target_: tensorframes.reps.Irreps
|
| 293 |
+
irreps: 513x0+85x1
|
| 294 |
+
n_layers: 8
|
| 295 |
+
heads: 32
|
| 296 |
+
edge_dim: 1
|
| 297 |
+
dropout: 0.0
|
| 298 |
+
attention_weight_dropout: 0.0
|
| 299 |
+
mlp_hidden_dim: null
|
| 300 |
+
mlp_activation:
|
| 301 |
+
_target_: hydra.utils.get_class
|
| 302 |
+
path: torch.nn.GELU
|
| 303 |
+
norm_layer_class:
|
| 304 |
+
_target_: torch_geometric.nn.norm.layer_norm.LayerNorm
|
| 305 |
+
_partial_: true
|
| 306 |
+
mode: node
|
| 307 |
+
activation_dropout: 0.0
|
| 308 |
+
cutoff: null
|
| 309 |
+
energy_readout_every: 2
|
| 310 |
+
atom_ref_module:
|
| 311 |
+
_target_: mldft.ml.models.components.atom_ref.AtomRef.from_dataset_statistics
|
| 312 |
+
dataset_statistics:
|
| 313 |
+
_target_: mldft.ml.preprocess.dataset_statistics.DatasetStatistics
|
| 314 |
+
path: /export/scratch/ialgroup/dft_data/QMUGSBin0_perturbed_fock/dataset_statistics/dataset_statistics_labels_local_frames_global_symmetric_natrep_e_kin_plus_xc.zarr
|
| 315 |
+
weigher_key: has_energy_label
|
| 316 |
+
initial_guess_module:
|
| 317 |
+
_target_: mldft.ml.models.components.initial_guess_delta_module.InitialGuessDeltaModule
|
| 318 |
+
input_size: 768
|
| 319 |
+
basis_info:
|
| 320 |
+
_target_: mldft.ml.data.components.basis_info.BasisInfo.from_dataset_info_yaml
|
| 321 |
+
path_to_data_info: /export/scratch/ialgroup/dft_data/QMUGSBin0_perturbed_fock/dataset_info.yaml
|
| 322 |
+
atomic_numbers:
|
| 323 |
+
- 1
|
| 324 |
+
- 6
|
| 325 |
+
- 7
|
| 326 |
+
- 8
|
| 327 |
+
- 9
|
| 328 |
+
dataset_statistics:
|
| 329 |
+
_target_: mldft.ml.preprocess.dataset_statistics.DatasetStatistics
|
| 330 |
+
path: /export/scratch/ialgroup/dft_data/QMUGSBin0_perturbed_fock/dataset_statistics/dataset_statistics_labels_local_frames_global_symmetric_natrep_e_kin_plus_xc.zarr
|
| 331 |
+
weigher_key: initial_guess_only
|
| 332 |
+
activation_function:
|
| 333 |
+
_target_: hydra.utils.get_class
|
| 334 |
+
path: torch.nn.GELU
|
| 335 |
+
hidden_layers:
|
| 336 |
+
- 768
|
| 337 |
+
dropout: 0.0
|
| 338 |
+
dimension_wise_rescaling_module:
|
| 339 |
+
_target_: mldft.ml.models.components.dimension_wise_rescaling.DimensionWiseRescaling.from_dataset_statistics
|
| 340 |
+
dataset_statistics:
|
| 341 |
+
_target_: mldft.ml.preprocess.dataset_statistics.DatasetStatistics
|
| 342 |
+
path: /export/scratch/ialgroup/dft_data/QMUGSBin0_perturbed_fock/dataset_statistics/dataset_statistics_labels_local_frames_global_symmetric_natrep_e_kin_plus_xc.zarr
|
| 343 |
+
weigher_key: has_energy_label
|
| 344 |
+
s_coeff: 50
|
| 345 |
+
s_grad: 0.05
|
| 346 |
+
epsilon: 1.0e-08
|
| 347 |
+
callbacks:
|
| 348 |
+
learning_rate_monitor:
|
| 349 |
+
_target_: lightning.pytorch.callbacks.LearningRateMonitor
|
| 350 |
+
model_checkpoint:
|
| 351 |
+
_target_: mldft.ml.callbacks.checkpoint.ModelCheckpointWithPermissions
|
| 352 |
+
dirpath: /export/scratch/ialgroup/dft_str25/models/train/runs/214__num_workers-32__qmugs_bin0_perturbed_fock__str25\qmugs_hard_cutoff_hierarc_tf__lr-1e-5__max_epochs-30__from_weight_checkpoint_110/checkpoints
|
| 353 |
+
filename: epoch_{epoch:03d}
|
| 354 |
+
monitor: val_loss/total
|
| 355 |
+
verbose: false
|
| 356 |
+
save_last: true
|
| 357 |
+
save_top_k: 1
|
| 358 |
+
mode: min
|
| 359 |
+
auto_insert_metric_name: false
|
| 360 |
+
save_weights_only: false
|
| 361 |
+
every_n_train_steps: null
|
| 362 |
+
train_time_interval: null
|
| 363 |
+
every_n_epochs: null
|
| 364 |
+
save_on_train_epoch_end: null
|
| 365 |
+
model_summary:
|
| 366 |
+
_target_: mldft.ml.callbacks.SubModelSummary
|
| 367 |
+
max_depth: -1
|
| 368 |
+
path_in_model: net
|
| 369 |
+
rich_progress_bar:
|
| 370 |
+
_target_: lightning.pytorch.callbacks.RichProgressBar
|
| 371 |
+
print_overrides:
|
| 372 |
+
_target_: mldft.ml.callbacks.PrintOverrides
|
| 373 |
+
compact: false
|
| 374 |
+
target_pred_scatters:
|
| 375 |
+
_target_: mldft.ml.callbacks.image_logging.LogTargetPredScatters
|
| 376 |
+
with_atom_ref: auto
|
| 377 |
+
train_timing:
|
| 378 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 379 |
+
initial_interval: 1000
|
| 380 |
+
val_timing:
|
| 381 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 382 |
+
initial_interval: 1000
|
| 383 |
+
gradient_scatter:
|
| 384 |
+
_target_: mldft.ml.callbacks.image_logging.LogGradientScatter
|
| 385 |
+
train_timing:
|
| 386 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 387 |
+
initial_interval: 1000
|
| 388 |
+
val_timing:
|
| 389 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 390 |
+
initial_interval: 1000
|
| 391 |
+
distance_embeddings:
|
| 392 |
+
_target_: mldft.ml.callbacks.image_logging.LogDistanceEmbeddings
|
| 393 |
+
max_distance: 8.0
|
| 394 |
+
n_distances: 1000
|
| 395 |
+
train_timing:
|
| 396 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 397 |
+
initial_interval: 1000
|
| 398 |
+
val_timing:
|
| 399 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 400 |
+
initial_interval: 1000
|
| 401 |
+
molecule_mesh_logging:
|
| 402 |
+
log_initial_guess: true
|
| 403 |
+
log_gradient: true
|
| 404 |
+
log_random_basis_functions: false
|
| 405 |
+
_target_: mldft.ml.callbacks.mesh_logging.LogMolecule
|
| 406 |
+
train_timing:
|
| 407 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 408 |
+
initial_interval: 1000
|
| 409 |
+
val_timing:
|
| 410 |
+
_target_: mldft.ml.callbacks.timing.EveryIncreasingInterval
|
| 411 |
+
initial_interval: 1000
|
| 412 |
+
custom_scalars:
|
| 413 |
+
_target_: mldft.ml.callbacks.custom_scalars.AddMetricAndLossCustomScalars
|
| 414 |
+
interval: 1000
|
| 415 |
+
logger:
|
| 416 |
+
tensorboard:
|
| 417 |
+
_target_: lightning.pytorch.loggers.tensorboard.TensorBoardLogger
|
| 418 |
+
save_dir: /export/scratch/ialgroup/dft_str25/models/train/runs/214__num_workers-32__qmugs_bin0_perturbed_fock__str25\qmugs_hard_cutoff_hierarc_tf__lr-1e-5__max_epochs-30__from_weight_checkpoint_110
|
| 419 |
+
max_queue: 10000
|
| 420 |
+
name: null
|
| 421 |
+
log_graph: false
|
| 422 |
+
default_hp_metric: false
|
| 423 |
+
prefix: ''
|
| 424 |
+
version: ''
|
| 425 |
+
trainer:
|
| 426 |
+
_target_: lightning.pytorch.trainer.Trainer
|
| 427 |
+
default_root_dir: /export/scratch/ialgroup/dft_str25/models/train/runs/214__num_workers-32__qmugs_bin0_perturbed_fock__str25\qmugs_hard_cutoff_hierarc_tf__lr-1e-5__max_epochs-30__from_weight_checkpoint_110
|
| 428 |
+
min_epochs: 1
|
| 429 |
+
max_epochs: 30
|
| 430 |
+
log_every_n_steps: 200
|
| 431 |
+
inference_mode: false
|
| 432 |
+
accelerator: auto
|
| 433 |
+
devices: 1
|
| 434 |
+
precision: 32
|
| 435 |
+
check_val_every_n_epoch: 1
|
| 436 |
+
deterministic: false
|
| 437 |
+
paths:
|
| 438 |
+
root_dir: /export/home/mickler/sciai-dft
|
| 439 |
+
data_dir: /export/scratch/ialgroup/dft_data
|
| 440 |
+
log_dir: /export/scratch/ialgroup/dft_str25/models
|
| 441 |
+
output_dir: /export/scratch/ialgroup/dft_str25/models/train/runs/214__num_workers-32__qmugs_bin0_perturbed_fock__str25\qmugs_hard_cutoff_hierarc_tf__lr-1e-5__max_epochs-30__from_weight_checkpoint_110
|
| 442 |
+
work_dir: /export/home/mickler/sciai-dft
|
| 443 |
+
extras:
|
| 444 |
+
ignore_warnings: false
|
| 445 |
+
enforce_tags: true
|
| 446 |
+
print_config: true
|
| 447 |
+
hostname: compgpu11
|
| 448 |
+
local: {}
|
| 449 |
+
git:
|
| 450 |
+
sha: 58990f9002b6e36eb94f874ccb8dc9a3609236ab
|
| 451 |
+
branch: main
|
| 452 |
+
is_dirty: true
|
trained-on-qmugs/trained-on-qmugs.ckpt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:dde9e2e940ebbfcf4c74681b3264c1add71bf3539634e1b81bacffd5bd08be32
|
| 3 |
+
size 417147510
|