Upload folder using huggingface_hub
Browse files- config.json +40 -0
- model.safetensors +3 -0
- optimizer.pt +3 -0
- rng_state.pth +3 -0
- scheduler.pt +3 -0
- tokenizer.json +0 -0
- tokenizer_config.json +17 -0
- trainer_state.json +123 -0
- training_args.bin +3 -0
config.json
ADDED
|
@@ -0,0 +1,40 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"add_cross_attention": false,
|
| 3 |
+
"architectures": [
|
| 4 |
+
"BertForTokenClassification"
|
| 5 |
+
],
|
| 6 |
+
"attention_probs_dropout_prob": 0.1,
|
| 7 |
+
"bos_token_id": null,
|
| 8 |
+
"classifier_dropout": null,
|
| 9 |
+
"dtype": "float32",
|
| 10 |
+
"eos_token_id": null,
|
| 11 |
+
"gradient_checkpointing": false,
|
| 12 |
+
"hidden_act": "gelu",
|
| 13 |
+
"hidden_dropout_prob": 0.1,
|
| 14 |
+
"hidden_size": 768,
|
| 15 |
+
"id2label": {
|
| 16 |
+
"0": "O",
|
| 17 |
+
"1": "B-DISEASE",
|
| 18 |
+
"2": "I-DISEASE"
|
| 19 |
+
},
|
| 20 |
+
"initializer_range": 0.02,
|
| 21 |
+
"intermediate_size": 3072,
|
| 22 |
+
"is_decoder": false,
|
| 23 |
+
"label2id": {
|
| 24 |
+
"B-DISEASE": 1,
|
| 25 |
+
"I-DISEASE": 2,
|
| 26 |
+
"O": 0
|
| 27 |
+
},
|
| 28 |
+
"layer_norm_eps": 1e-12,
|
| 29 |
+
"max_position_embeddings": 512,
|
| 30 |
+
"model_type": "bert",
|
| 31 |
+
"num_attention_heads": 12,
|
| 32 |
+
"num_hidden_layers": 12,
|
| 33 |
+
"pad_token_id": 0,
|
| 34 |
+
"position_embedding_type": "absolute",
|
| 35 |
+
"tie_word_embeddings": true,
|
| 36 |
+
"transformers_version": "5.2.0",
|
| 37 |
+
"type_vocab_size": 2,
|
| 38 |
+
"use_cache": false,
|
| 39 |
+
"vocab_size": 28996
|
| 40 |
+
}
|
model.safetensors
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:b94992d33dfd8114528f7529978f3b54ed2ec321ab9eb159ec36da18790dd6a0
|
| 3 |
+
size 430911260
|
optimizer.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:8bdf6525e65a8657570e556020a517333e508de982cddba3e433eac37cf0c264
|
| 3 |
+
size 861945547
|
rng_state.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:56639866e7977d5ee4dfefd88e62ff8725fc505f3f76e83e2c93fe1056eec507
|
| 3 |
+
size 14645
|
scheduler.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:4da0508737a8abd1fd0096c257a0e4eb8603a36da67f03c1267ba42407968d28
|
| 3 |
+
size 1465
|
tokenizer.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
tokenizer_config.json
ADDED
|
@@ -0,0 +1,17 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "tokenizers",
|
| 3 |
+
"clean_up_tokenization_spaces": true,
|
| 4 |
+
"cls_token": "[CLS]",
|
| 5 |
+
"do_basic_tokenize": true,
|
| 6 |
+
"do_lower_case": false,
|
| 7 |
+
"is_local": false,
|
| 8 |
+
"mask_token": "[MASK]",
|
| 9 |
+
"model_max_length": 512,
|
| 10 |
+
"never_split": null,
|
| 11 |
+
"pad_token": "[PAD]",
|
| 12 |
+
"sep_token": "[SEP]",
|
| 13 |
+
"strip_accents": null,
|
| 14 |
+
"tokenize_chinese_chars": true,
|
| 15 |
+
"tokenizer_class": "BertTokenizer",
|
| 16 |
+
"unk_token": "[UNK]"
|
| 17 |
+
}
|
trainer_state.json
ADDED
|
@@ -0,0 +1,123 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"best_global_step": 1488,
|
| 3 |
+
"best_metric": 0.7845666705758181,
|
| 4 |
+
"best_model_checkpoint": "/home/users/seanfarr/PetBERT/projects/PetBERT_disease/model/checkpoint-1488",
|
| 5 |
+
"epoch": 6.0,
|
| 6 |
+
"eval_steps": 500,
|
| 7 |
+
"global_step": 1488,
|
| 8 |
+
"is_hyper_param_search": false,
|
| 9 |
+
"is_local_process_zero": true,
|
| 10 |
+
"is_world_process_zero": true,
|
| 11 |
+
"log_history": [
|
| 12 |
+
{
|
| 13 |
+
"epoch": 1.0,
|
| 14 |
+
"eval_f1": 0.7454965357967668,
|
| 15 |
+
"eval_loss": 0.020537996664643288,
|
| 16 |
+
"eval_precision": 0.7096065069245988,
|
| 17 |
+
"eval_recall": 0.7852104110921917,
|
| 18 |
+
"eval_runtime": 23.7231,
|
| 19 |
+
"eval_samples_per_second": 210.639,
|
| 20 |
+
"eval_steps_per_second": 6.618,
|
| 21 |
+
"step": 248
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"epoch": 2.0,
|
| 25 |
+
"eval_f1": 0.7633587786259544,
|
| 26 |
+
"eval_loss": 0.02155238576233387,
|
| 27 |
+
"eval_precision": 0.71795970852979,
|
| 28 |
+
"eval_recall": 0.8148868888348334,
|
| 29 |
+
"eval_runtime": 23.8598,
|
| 30 |
+
"eval_samples_per_second": 209.432,
|
| 31 |
+
"eval_steps_per_second": 6.58,
|
| 32 |
+
"step": 496
|
| 33 |
+
},
|
| 34 |
+
{
|
| 35 |
+
"epoch": 2.0161290322580645,
|
| 36 |
+
"grad_norm": 0.2515815198421478,
|
| 37 |
+
"learning_rate": 4.9899395161290325e-05,
|
| 38 |
+
"loss": 0.06134441375732422,
|
| 39 |
+
"step": 500
|
| 40 |
+
},
|
| 41 |
+
{
|
| 42 |
+
"epoch": 3.0,
|
| 43 |
+
"eval_f1": 0.7608919382504288,
|
| 44 |
+
"eval_loss": 0.02318727970123291,
|
| 45 |
+
"eval_precision": 0.7179542511868796,
|
| 46 |
+
"eval_recall": 0.8092921430308927,
|
| 47 |
+
"eval_runtime": 23.871,
|
| 48 |
+
"eval_samples_per_second": 209.333,
|
| 49 |
+
"eval_steps_per_second": 6.577,
|
| 50 |
+
"step": 744
|
| 51 |
+
},
|
| 52 |
+
{
|
| 53 |
+
"epoch": 4.0,
|
| 54 |
+
"eval_f1": 0.7779738792799152,
|
| 55 |
+
"eval_loss": 0.024106163531541824,
|
| 56 |
+
"eval_precision": 0.7534184138559709,
|
| 57 |
+
"eval_recall": 0.8041838968620774,
|
| 58 |
+
"eval_runtime": 23.6471,
|
| 59 |
+
"eval_samples_per_second": 211.315,
|
| 60 |
+
"eval_steps_per_second": 6.639,
|
| 61 |
+
"step": 992
|
| 62 |
+
},
|
| 63 |
+
{
|
| 64 |
+
"epoch": 4.032258064516129,
|
| 65 |
+
"grad_norm": 0.13704919815063477,
|
| 66 |
+
"learning_rate": 4.979858870967742e-05,
|
| 67 |
+
"loss": 0.013821365356445313,
|
| 68 |
+
"step": 1000
|
| 69 |
+
},
|
| 70 |
+
{
|
| 71 |
+
"epoch": 5.0,
|
| 72 |
+
"eval_f1": 0.7597054886211513,
|
| 73 |
+
"eval_loss": 0.02818991430103779,
|
| 74 |
+
"eval_precision": 0.7016278590562539,
|
| 75 |
+
"eval_recall": 0.8282656288007784,
|
| 76 |
+
"eval_runtime": 23.8709,
|
| 77 |
+
"eval_samples_per_second": 209.335,
|
| 78 |
+
"eval_steps_per_second": 6.577,
|
| 79 |
+
"step": 1240
|
| 80 |
+
},
|
| 81 |
+
{
|
| 82 |
+
"epoch": 6.0,
|
| 83 |
+
"eval_f1": 0.7845666705758181,
|
| 84 |
+
"eval_loss": 0.02867285907268524,
|
| 85 |
+
"eval_precision": 0.7574728260869565,
|
| 86 |
+
"eval_recall": 0.8136706397470201,
|
| 87 |
+
"eval_runtime": 23.8825,
|
| 88 |
+
"eval_samples_per_second": 209.233,
|
| 89 |
+
"eval_steps_per_second": 6.574,
|
| 90 |
+
"step": 1488
|
| 91 |
+
}
|
| 92 |
+
],
|
| 93 |
+
"logging_steps": 500,
|
| 94 |
+
"max_steps": 248000,
|
| 95 |
+
"num_input_tokens_seen": 0,
|
| 96 |
+
"num_train_epochs": 1000,
|
| 97 |
+
"save_steps": 500,
|
| 98 |
+
"stateful_callbacks": {
|
| 99 |
+
"EarlyStoppingCallback": {
|
| 100 |
+
"args": {
|
| 101 |
+
"early_stopping_patience": 3,
|
| 102 |
+
"early_stopping_threshold": 0.0
|
| 103 |
+
},
|
| 104 |
+
"attributes": {
|
| 105 |
+
"early_stopping_patience_counter": 0
|
| 106 |
+
}
|
| 107 |
+
},
|
| 108 |
+
"TrainerControl": {
|
| 109 |
+
"args": {
|
| 110 |
+
"should_epoch_stop": false,
|
| 111 |
+
"should_evaluate": false,
|
| 112 |
+
"should_log": false,
|
| 113 |
+
"should_save": true,
|
| 114 |
+
"should_training_stop": false
|
| 115 |
+
},
|
| 116 |
+
"attributes": {}
|
| 117 |
+
}
|
| 118 |
+
},
|
| 119 |
+
"total_flos": 1.2405959576819712e+16,
|
| 120 |
+
"train_batch_size": 32,
|
| 121 |
+
"trial_name": null,
|
| 122 |
+
"trial_params": null
|
| 123 |
+
}
|
training_args.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:2375db995ede8455707eeeda5209e89bdb61f4472d9cadcb01f19dd399f784d9
|
| 3 |
+
size 5265
|