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seanhacks
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relation_prediction_mlp_128e

PyTorch
napistu-torch
napistu
graph-neural-networks
biological-networks
graph_conv
mlp
edge_prediction
Model card Files
xet
 Community
seanhacks commited on
Commit
11fd609
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verified ·
1 Parent(s): 8386c3f

model: graph_conv-mlp_h128_l3_edge_prediction | (graph_conv-mlp_h128_l3) | WandB: aqyutqg5

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  1. wandb_run_info.yaml +69 -0
wandb_run_info.yaml ADDED
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+ run_summaries:
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+ _runtime: 67481
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+ _step: 17031
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+ _timestamp: 1767558181.679414
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+ _wandb:
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+ runtime: 67481
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+ avg_epoch_duration: 127.16087543404718
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+ corruption_error: 'supervision_edges shape mismatch: torch.Size([2, 6420899]) !=
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+ (2, 7886546)'
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+ corruption_restart: 7
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+ embeddings/embedding_norm_max: 460.9134216308594
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+ embeddings/embedding_norm_mean: 41.45884704589844
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+ embeddings/embedding_norm_median: 40.61911392211914
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+ embeddings/embedding_norm_std: 23.069360733032227
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+ epoch: 0
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+ epoch_duration_seconds: 76.73876094818115
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+ lr-AdamW: 3.3038823234470865e-05
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+ score_distributions/head_type: mlp
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+ score_distributions/neg_saturated_pct: 0.06349916011095047
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+ score_distributions/neg_score_max: 9.304384231567385
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+ score_distributions/neg_score_mean: -1.0776991844177246
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+ score_distributions/neg_score_min: -14.141583442687988
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+ score_distributions/neg_score_std: 1.3150835037231443
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+ score_distributions/pos_saturated_pct: 0.08080118894577026
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+ score_distributions/pos_score_max: 30.776199340820312
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+ score_distributions/pos_score_mean: 0.7887675166130066
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+ score_distributions/pos_score_min: -8.622583389282227
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+ score_distributions/pos_score_std: 1.6129416227340698
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+ score_distributions/rank_corr_with_dotprod: 0.8755750719901808
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+ score_distributions/separation_cohens_d: 1.419276237487793
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+ score_distributions/split: validation
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+ test_ap: 0.8250309824943542
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+ test_auc: 0.8226569294929504
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+ test_auc_catalyst -> modified: 0.9634655714035034
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+ test_auc_catalyst -> reactant: 0.9582761526107788
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+ test_auc_inhibitor -> modified: 0.8757122755050659
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+ test_auc_inhibitor -> reactant: 0.9496731758117676
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+ test_auc_interactor -> interactor: 0.8179164528846741
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+ test_auc_modifier -> modified: 0.8928453922271729
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+ test_auc_other relation: 0.9337802529335022
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+ test_auc_reactant -> product: 0.9563539624214172
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+ test_auc_stimulator -> modified: 0.901599943637848
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+ test_auc_stimulator -> reactant: 0.981618583202362
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+ test_auc_stimulator -> stimulator: 0.9252251982688904
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+ test_relation_weighted_auc: 0.8542302250862122
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+ time_per_epoch_avg: 127.16087543404718
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+ time_per_epoch_std: 1030.8219190536042
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+ total_epochs_completed: 852
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+ total_train_time_minutes: 1806.8606684327128
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+ train_loss: 0.037680234760046005
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+ trainer/global_step: 0
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+ val_ap: 0.8253146409988403
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+ val_auc: 0.8232619166374207
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+ val_auc_catalyst -> modified: 0.9600861668586732
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+ val_auc_catalyst -> reactant: 0.9644675850868224
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+ val_auc_inhibitor -> modified: 0.8702734112739563
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+ val_auc_inhibitor -> reactant: 0.953899383544922
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+ val_auc_interactor -> interactor: 0.8187581896781921
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+ val_auc_modifier -> modified: 0.8897121548652649
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+ val_auc_other relation: 0.9448373913764954
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+ val_auc_reactant -> product: 0.9530693888664246
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+ val_auc_stimulator -> modified: 0.8993922472000122
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+ val_auc_stimulator -> reactant: 0.973243772983551
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+ val_auc_stimulator -> stimulator: 0.8983583450317383
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+ val_relation_weighted_auc: 0.853615939617157
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+ wandb_entity: napistu
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+ wandb_project: napistu-experiments
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+ wandb_run_id: aqyutqg5
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+ run_path: napistu/napistu-experiments/aqyutqg5