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seanhacks
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relation_prediction_rotate_128e

PyTorch
napistu-torch
napistu
graph-neural-networks
biological-networks
graph_conv
rotate
edge_prediction
relation-aware
Model card Files
xet
Community
seanhacks commited on
Commit
c97cec3
·
verified ·
1 Parent(s): f549b40

model: graph_conv-rotate_h128_l3_edge_prediction | (graph_conv-rotate_h128_l3) | WandB: xpa2bgz2

Browse files
Files changed (1) hide show
  1. wandb_run_info.yaml +69 -0
wandb_run_info.yaml ADDED
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+ run_summaries:
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+ _runtime: 84103
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+ _step: 19862
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+ _timestamp: 1767465082.9699252
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+ _wandb:
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+ runtime: 84103
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+ avg_epoch_duration: 151.31775347304344
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+ corruption_error: 'supervision_edges shape mismatch: torch.Size([2, 6420899]) !=
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+ (2, 7154913)'
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+ corruption_restart: 35
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+ embeddings/embedding_norm_max: 416.5720520019531
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+ embeddings/embedding_norm_mean: 37.73653793334961
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+ embeddings/embedding_norm_median: 31.782020568847656
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+ embeddings/embedding_norm_std: 26.845855712890625
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+ epoch: 0
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+ epoch_duration_seconds: 67312.34931778908
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+ lr-AdamW: 3.3745793488019806e-09
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+ score_distributions/head_type: rotate
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+ score_distributions/neg_saturated_pct: 0
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+ score_distributions/neg_score_max: -0.006176791153848171
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+ score_distributions/neg_score_mean: -0.1596764773130417
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+ score_distributions/neg_score_min: -0.2342658489942551
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+ score_distributions/neg_score_std: 0.03825874254107475
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+ score_distributions/pos_saturated_pct: 0
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+ score_distributions/pos_score_max: -0.0003116156149189919
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+ score_distributions/pos_score_mean: -0.1093696430325508
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+ score_distributions/pos_score_min: -0.23493774235248568
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+ score_distributions/pos_score_std: 0.049206990748643875
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+ score_distributions/rank_corr_with_dotprod: 0.9488442650619044
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+ score_distributions/separation_cohens_d: 1.3149107694625854
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+ score_distributions/split: validation
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+ test_ap: 0.8126184940338135
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+ test_auc: 0.8088658452033997
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+ test_auc_catalyst -> modified: 0.933527946472168
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+ test_auc_catalyst -> reactant: 0.9017887711524964
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+ test_auc_inhibitor -> modified: 0.8253632187843323
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+ test_auc_inhibitor -> reactant: 0.7449769973754883
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+ test_auc_interactor -> interactor: 0.8076074123382568
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+ test_auc_modifier -> modified: 0.7173792719841003
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+ test_auc_other relation: 0.8307272791862488
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+ test_auc_reactant -> product: 0.9135193824768066
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+ test_auc_stimulator -> modified: 0.846360445022583
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+ test_auc_stimulator -> reactant: 0.8577002882957458
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+ test_auc_stimulator -> stimulator: 0.868500292301178
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+ test_relation_weighted_auc: 0.8193121552467346
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+ time_per_epoch_avg: 151.31775347304344
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+ time_per_epoch_std: 2124.9285195868993
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+ total_epochs_completed: 1000
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+ total_train_time_minutes: 2523.305857849121
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+ train_loss: 0.0001010746564134024
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+ trainer/global_step: 0
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+ val_ap: 0.7918073534965515
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+ val_auc: 0.7859498858451843
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+ val_auc_catalyst -> modified: 0.9389167428016664
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+ val_auc_catalyst -> reactant: 0.9684428572654724
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+ val_auc_inhibitor -> modified: 0.8344176411628723
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+ val_auc_inhibitor -> reactant: 0.8990505337715149
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+ val_auc_interactor -> interactor: 0.7831645011901855
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+ val_auc_modifier -> modified: 0.7066332697868347
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+ val_auc_other relation: 0.9601475596427916
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+ val_auc_reactant -> product: 0.9596471786499025
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+ val_auc_stimulator -> modified: 0.841127336025238
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+ val_auc_stimulator -> reactant: 0.9697216153144836
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+ val_auc_stimulator -> stimulator: 0.9056708216667176
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+ val_relation_weighted_auc: 0.8105074763298035
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+ wandb_entity: napistu
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+ wandb_project: napistu-experiments
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+ wandb_run_id: xpa2bgz2
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+ run_path: napistu/napistu-experiments/xpa2bgz2