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seanhacks
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relation_prediction_transe_128e

PyTorch
napistu-torch
napistu
graph-neural-networks
biological-networks
graph_conv
transe
edge_prediction
relation-aware
Model card Files
xet
Community
seanhacks commited on
Commit
8233d32
·
verified ·
1 Parent(s): 0d4a9f9

model: graph_conv-transe_h128_l3_edge_prediction | (graph_conv-transe_h128_l3) | WandB: i3kmoqkx

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Files changed (1) hide show
  1. wandb_run_info.yaml +69 -0
wandb_run_info.yaml ADDED
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+ run_summaries:
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+ _runtime: 37756
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+ _step: 9860
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+ _timestamp: 1767155058.098707
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+ _wandb:
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+ runtime: 37756
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+ avg_epoch_duration: 75.48305489683152
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+ corruption_error: 'supervision_edges shape mismatch: torch.Size([2, 6420899]) !=
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+ (2, 7154625)'
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+ corruption_restart: 8
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+ embeddings/embedding_norm_max: 398.7638244628906
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+ embeddings/embedding_norm_mean: 33.639739990234375
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+ embeddings/embedding_norm_median: 30.113134384155273
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+ embeddings/embedding_norm_std: 23.300180435180664
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+ epoch: 0
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+ epoch_duration_seconds: 71.69668412208557
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+ lr-AdamW: 0.0005
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+ score_distributions/head_type: transe
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+ score_distributions/neg_saturated_pct: 0
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+ score_distributions/neg_score_max: -0.7465502619743347
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+ score_distributions/neg_score_mean: -1.46687650680542
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+ score_distributions/neg_score_min: -1.8509074449539185
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+ score_distributions/neg_score_std: 0.10242225974798204
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+ score_distributions/pos_saturated_pct: 0
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+ score_distributions/pos_score_max: -0.5373783707618713
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+ score_distributions/pos_score_mean: -1.3133071660995483
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+ score_distributions/pos_score_min: -1.7776354551315308
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+ score_distributions/pos_score_std: 0.13316406309604645
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+ score_distributions/rank_corr_with_dotprod: 0.6941741221768316
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+ score_distributions/separation_cohens_d: 1.4993746280670166
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+ score_distributions/split: validation
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+ test_ap: 0.8195679783821106
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+ test_auc: 0.8186973333358765
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+ test_auc_catalyst -> modified: 0.9618352055549622
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+ test_auc_catalyst -> reactant: 0.96705961227417
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+ test_auc_inhibitor -> modified: 0.8646454215049744
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+ test_auc_inhibitor -> reactant: 0.9281045198440552
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+ test_auc_interactor -> interactor: 0.8138985633850098
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+ test_auc_modifier -> modified: 0.8514809012413025
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+ test_auc_other relation: 0.9610307812690736
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+ test_auc_reactant -> product: 0.9817894697189332
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+ test_auc_stimulator -> modified: 0.8920636773109436
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+ test_auc_stimulator -> reactant: 0.9870874881744384
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+ test_auc_stimulator -> stimulator: 0.9274837374687196
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+ test_relation_weighted_auc: 0.8491145372390747
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+ time_per_epoch_avg: 75.48305489683152
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+ time_per_epoch_std: 10.123364475038052
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+ total_epochs_completed: 500
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+ total_train_time_minutes: 629.6858022133509
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+ train_loss: 5.632906686514616e-05
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+ trainer/global_step: 0
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+ val_ap: 0.8176206946372986
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+ val_auc: 0.8166832327842712
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+ val_auc_catalyst -> modified: 0.9614050388336182
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+ val_auc_catalyst -> reactant: 0.9745140671730042
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+ val_auc_inhibitor -> modified: 0.8642547130584717
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+ val_auc_inhibitor -> reactant: 0.9416747689247132
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+ val_auc_interactor -> interactor: 0.8117623925209045
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+ val_auc_modifier -> modified: 0.8564180135726929
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+ val_auc_other relation: 0.959516167640686
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+ val_auc_reactant -> product: 0.9807780981063844
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+ val_auc_stimulator -> modified: 0.8906590342521667
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+ val_auc_stimulator -> reactant: 0.9852740168571472
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+ val_auc_stimulator -> stimulator: 0.8955665826797485
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+ val_relation_weighted_auc: 0.8475104570388794
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+ wandb_entity: napistu
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+ wandb_project: napistu-experiments
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+ wandb_run_id: i3kmoqkx
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+ run_path: napistu/napistu-experiments/i3kmoqkx