serliezer's picture
Add scripts/run_synthetic.py
1f8dd95 verified
#!/usr/bin/env python3
"""Run synthetic experiments for Dobrushin unlearning theory validation."""
import os
import sys
import json
import time
import argparse
import yaml
import numpy as np
from collections import defaultdict
from datetime import datetime
# Add project root to path
sys.path.insert(0, os.path.dirname(os.path.dirname(os.path.abspath(__file__))))
from src.data import generate_gamma_poisson_data, generate_gaussian_gaussian_data, generate_gaussian_gamma_data, sample_deletions
from src.model import PoissonGammaVI, GaussianGaussianVI, GaussianGammaMAP, get_model
from src.graph_utils import build_adjacency, compute_graph_stats
from src.metrics import (compute_all_metrics, compute_deletion_influence_by_distance,
fit_exponential_decay, compute_local_error, compute_gradient_interference,
compute_chi_poisson_gamma, compute_chi_gaussian)
from src.unlearning import one_step_downdate_poisson_gamma
from src.utils import FitResult, generate_run_id, generate_config_id, save_jsonl, ensure_dir
def run_single_config(config, mode='pilot'):
"""Run all deletions for a single configuration."""
graph_type = config['graph_type']
N = config['N']
M = config['M']
K = config['K']
avg_degree = config['avg_degree']
count_scale = config.get('count_scale', 1.0)
prior_strength = config.get('prior_strength', 'strong')
prior_cfg = config.get('prior_config', {})
a0 = prior_cfg.get('a0', 0.3)
b0 = prior_cfg.get('b0', 1.0)
c0 = prior_cfg.get('c0', 0.3)
d0 = prior_cfg.get('d0', 1.0)
num_deletions = config.get('num_deletions', 20)
radii = config.get('radii', [1, 2, 3, 4])
max_iter = config.get('max_iter', 500)
tol = config.get('tol', 1e-5)
seed = config.get('seed', 42)
model_family = config.get('model_family', 'poisson_gamma')
config_id = generate_config_id(config)
run_id = generate_run_id()
print(f"\n{'='*60}")
print(f"Config: {graph_type}, K={K}, deg={avg_degree}, count={count_scale}, prior={prior_strength}")
print(f"Model: {model_family}, Config ID: {config_id}")
print(f"{'='*60}")
# Generate data
if model_family == 'poisson_gamma':
edges, U_true, V_true, graph_edges = generate_gamma_poisson_data(
N, M, K, graph_type, avg_degree, count_scale, a0, b0, c0, d0, seed=seed)
elif model_family == 'gaussian_gaussian':
sigma_U = config.get('sigma_U', 1.0)
sigma_V = config.get('sigma_V', 1.0)
sigma_x = config.get('sigma_x', 1.0)
edges, U_true, V_true, graph_edges = generate_gaussian_gaussian_data(
N, M, K, graph_type, avg_degree, sigma_U, sigma_V, sigma_x, seed=seed)
elif model_family == 'gaussian_gamma_map':
sigma_x = config.get('sigma_x', 1.0)
edges, U_true, V_true, graph_edges = generate_gaussian_gamma_data(
N, M, K, graph_type, avg_degree, a0, b0, c0, d0, sigma_x, seed=seed)
if len(edges) < 10:
print(f" WARNING: Only {len(edges)} edges generated, skipping config")
return []
graph_stats = compute_graph_stats([(e[0], e[1]) for e in edges], N, M)
print(f" Graph: {graph_stats['n_edges']} edges, mean user deg={graph_stats['user_degree_mean']:.1f}")
# Fit full model
print(f" Fitting full model...")
t_full_start = time.time()
if model_family == 'poisson_gamma':
model = PoissonGammaVI(N, M, K, a0, b0, c0, d0, max_iter=max_iter, tol=tol, seed=seed)
elif model_family == 'gaussian_gaussian':
model = GaussianGaussianVI(N, M, K, sigma_U=config.get('sigma_U', 1.0),
sigma_V=config.get('sigma_V', 1.0),
sigma_x=config.get('sigma_x', 1.0),
max_iter=max_iter, tol=tol, seed=seed)
elif model_family == 'gaussian_gamma_map':
model = GaussianGammaMAP(N, M, K, a0, b0, c0, d0,
sigma_x=config.get('sigma_x', 1.0),
lr=config.get('lr', 0.01),
max_iter=max_iter, tol=tol, seed=seed)
full_result = model.fit_full(edges)
full_params = full_result.params
t_full = time.time() - t_full_start
print(f" Full fit: {full_result.n_iterations} iters, {t_full:.1f}s, converged={full_result.converged}")
# Sample deletions
user_to_items, item_to_users, edge_dict = build_adjacency(edges, N, M)
deletion_samples = sample_deletions(edges, user_to_items, item_to_users, num_deletions, seed=seed)
print(f" Running {len(deletion_samples)} deletions...")
records = []
for del_idx, (edge_to_del, del_type) in enumerate(deletion_samples):
if del_idx % 5 == 0:
print(f" Deletion {del_idx+1}/{len(deletion_samples)} ({del_type})")
i_del, j_del, x_del = edge_to_del
# Exact deletion
t0 = time.time()
exact_result = model.fit_without_edge(edges, edge_to_del, init_params=full_params)
t_exact = time.time() - t0
exact_params = exact_result.params
# Local deletions for each radius
local_results = {}
local_params_by_radius = {}
for R in radii:
t0 = time.time()
local_result = model.fit_local(edges, edge_to_del, R, init_params=full_params)
local_results[R] = local_result
local_params_by_radius[R] = local_result.params
# Warm-start global
t0 = time.time()
ws_result = model.fit_warm_start_global(edges, edge_to_del, init_params=full_params)
# One-step downdate (only for poisson_gamma)
one_step_params = None
one_step_runtime = None
if model_family == 'poisson_gamma':
os_result = one_step_downdate_poisson_gamma(
edges, edge_to_del, full_params, N, M, K, a0, b0, c0, d0)
one_step_params = os_result.params
one_step_runtime = os_result.runtime_sec
# Compute all metrics
model_kwargs = {}
if model_family == 'poisson_gamma':
model_kwargs = {'a0': a0, 'b0': b0, 'c0': c0, 'd0': d0}
else:
model_kwargs = {'sigma_x': config.get('sigma_x', 1.0)}
metrics = compute_all_metrics(
full_params, exact_params, local_params_by_radius,
ws_result.params, one_step_params,
edge_to_del, edges, N, M, K,
model_family, model=model, radii=radii,
model_kwargs=model_kwargs)
# Build record
record = {
'run_id': run_id,
'config_id': config_id,
'dataset_type': 'synthetic',
'dataset_name': f'synthetic_{model_family}',
'model_family': model_family,
'inference_type': 'vi' if model_family != 'gaussian_gamma_map' else 'map',
'likelihood': 'poisson' if model_family == 'poisson_gamma' else 'gaussian',
'prior': 'gamma' if 'gamma' in model_family else 'gaussian',
'graph_type': graph_type,
'seed': seed,
'N': N,
'M': M,
'K': K,
'avg_degree': avg_degree,
'count_scale': count_scale if model_family == 'poisson_gamma' else None,
'prior_strength': prior_strength,
'deletion_edge': [int(i_del), int(j_del), float(x_del)],
'deletion_type': del_type,
'deletion_index': del_idx,
# Runtimes
'runtime_full': t_full,
'runtime_exact': t_exact,
'runtime_warm_start': ws_result.runtime_sec,
'runtime_one_step': one_step_runtime,
# Exact deletion convergence
'exact_converged': exact_result.converged,
'exact_iterations': exact_result.n_iterations,
'ws_converged': ws_result.converged,
'ws_iterations': ws_result.n_iterations,
}
# Add local runtimes
for R in radii:
record[f'runtime_local_R{R}'] = local_results[R].runtime_sec
record[f'local_R{R}_converged'] = local_results[R].converged
record[f'local_R{R}_iterations'] = local_results[R].n_iterations
# Add metrics
record.update(metrics)
# Flatten influence_by_distance for CSV compatibility
if 'influence_by_distance' in record:
for d_str, val in record['influence_by_distance'].items():
record[f'influence_d{d_str}'] = val
# Add regime label
record['regime'] = f"{graph_type}_{prior_strength}_deg{avg_degree}_cs{count_scale}"
# Extra config fields
if model_family == 'poisson_gamma':
record['a0'] = a0
record['b0'] = b0
record['c0'] = c0
record['d0'] = d0
if model_family in ('gaussian_gaussian', 'gaussian_gamma_map'):
record['sigma_x'] = config.get('sigma_x', 1.0)
if model_family == 'gaussian_gaussian':
record['sigma_U'] = config.get('sigma_U', 1.0)
record['sigma_V'] = config.get('sigma_V', 1.0)
records.append(record)
return records
def build_config_grid(grid_cfg, mode='pilot'):
"""Build list of configs from grid specification."""
cfg = grid_cfg[mode] if mode in grid_cfg else grid_cfg.get('pilot', grid_cfg)
configs = []
N = cfg['N']
M = cfg['M']
radii = cfg.get('radii', [1, 2, 3, 4])
num_del = cfg.get('num_deletions_per_config', 20)
seed = cfg.get('seed', 42)
for K in cfg['K_values']:
for gt in cfg['graph_types']:
for deg_name, deg_val in cfg['avg_degree_levels'].items():
for cs_name, cs_val in cfg['count_scale_levels'].items():
for ps_name, ps_cfg in cfg['prior_strength_configs'].items():
configs.append({
'N': N, 'M': M, 'K': K,
'graph_type': gt,
'avg_degree': deg_val,
'avg_degree_label': deg_name,
'count_scale': cs_val,
'count_scale_label': cs_name,
'prior_strength': ps_name,
'prior_config': ps_cfg,
'num_deletions': num_del,
'radii': radii,
'seed': seed,
'model_family': 'poisson_gamma',
})
return configs
def build_model_family_grid(grid_cfg):
"""Build config grid for model-family ablation."""
cfg = grid_cfg.get('model_family_ablation', {})
if not cfg:
return []
configs = []
N = cfg.get('N', 200)
M = cfg.get('M', 200)
radii = cfg.get('radii', [1, 2, 3, 4])
num_del = cfg.get('num_deletions_per_config', 30)
seed = cfg.get('seed', 42)
graph_types = cfg.get('graph_types', ['bounded_degree', 'erdos_renyi', 'power_law'])
deg_values = cfg.get('avg_degree_values', [5, 15])
K_values = cfg.get('K_values', [5, 10])
# Poisson-Gamma configs
pg_cfg = cfg.get('poisson_gamma', {})
for K in K_values:
for gt in graph_types:
for deg in deg_values:
for cs_name, cs_val in pg_cfg.get('count_scale_levels', {'medium': 1.0}).items():
for ps_name, ps_dict in pg_cfg.get('prior_configs', {'strong': {'a0': 1.0, 'b0': 1.0, 'c0': 1.0, 'd0': 1.0}}).items():
configs.append({
'N': N, 'M': M, 'K': K,
'graph_type': gt, 'avg_degree': deg,
'count_scale': cs_val, 'count_scale_label': cs_name,
'prior_strength': ps_name, 'prior_config': ps_dict,
'num_deletions': num_del, 'radii': radii, 'seed': seed,
'model_family': 'poisson_gamma',
})
# Gaussian-Gaussian configs
gg_cfg = cfg.get('gaussian_gaussian', {})
for K in K_values:
for gt in graph_types:
for deg in deg_values:
for sx_name, sx_val in gg_cfg.get('sigma_x_values', {'medium_noise': 1.0}).items():
for sp_name, sp_val in gg_cfg.get('sigma_prior_values', {'strong_prior': 0.5}).items():
configs.append({
'N': N, 'M': M, 'K': K,
'graph_type': gt, 'avg_degree': deg,
'sigma_x': sx_val, 'sigma_x_label': sx_name,
'sigma_U': sp_val, 'sigma_V': sp_val,
'prior_strength': sp_name,
'num_deletions': num_del, 'radii': radii, 'seed': seed,
'model_family': 'gaussian_gaussian',
})
# Gaussian-Gamma MAP configs
ggm_cfg = cfg.get('gaussian_gamma_map', {})
for K in K_values:
for gt in graph_types:
for deg in deg_values:
for sx_name, sx_val in ggm_cfg.get('sigma_x_values', {'medium_noise': 1.0}).items():
for gp_name, gp_dict in ggm_cfg.get('gamma_prior_strength', {'strong': {'a0': 2.0, 'b0': 2.0, 'c0': 2.0, 'd0': 2.0}}).items():
configs.append({
'N': N, 'M': M, 'K': K,
'graph_type': gt, 'avg_degree': deg,
'sigma_x': sx_val, 'sigma_x_label': sx_name,
'prior_strength': gp_name, 'prior_config': gp_dict,
'num_deletions': num_del, 'radii': radii, 'seed': seed,
'model_family': 'gaussian_gamma_map',
'lr': 0.005,
})
return configs
def main():
parser = argparse.ArgumentParser()
parser.add_argument('--config', type=str, default='config/synthetic_grid.yaml')
parser.add_argument('--mode', type=str, default='pilot', choices=['pilot', 'full', 'model_family'])
parser.add_argument('--max_configs', type=int, default=None, help='Limit number of configs for testing')
args = parser.parse_args()
with open(args.config) as f:
grid_cfg = yaml.safe_load(f)
if args.mode == 'model_family':
configs = build_model_family_grid(grid_cfg)
else:
configs = build_config_grid(grid_cfg, args.mode)
if args.max_configs:
configs = configs[:args.max_configs]
print(f"Running {len(configs)} configurations in {args.mode} mode")
output_dir = ensure_dir('results/raw')
timestamp = datetime.now().strftime("%Y%m%d_%H%M%S")
output_file = os.path.join(output_dir, f'synthetic_{args.mode}_{timestamp}.jsonl')
all_records = []
for cfg_idx, config in enumerate(configs):
print(f"\n>>> Config {cfg_idx+1}/{len(configs)}")
try:
records = run_single_config(config, mode=args.mode)
all_records.extend(records)
# Save incrementally
save_jsonl(records, output_file)
print(f" Saved {len(records)} records (total: {len(all_records)})")
except Exception as e:
print(f" ERROR in config {cfg_idx+1}: {e}")
import traceback
traceback.print_exc()
# Log to debug
debug_entry = {
'config_index': cfg_idx,
'config': {k: str(v) for k, v in config.items()},
'error': str(e),
'timestamp': datetime.now().isoformat(),
}
debug_path = 'debug_errors.jsonl'
with open(debug_path, 'a') as f:
f.write(json.dumps(debug_entry) + '\n')
print(f"\n{'='*60}")
print(f"Completed. Total records: {len(all_records)}")
print(f"Output: {output_file}")
return output_file
if __name__ == '__main__':
main()