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9c6961c | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 | import gradio as gr
import json
import random
import os
from datetime import datetime
# --- PATH CONFIGURATION ---
DATA_PATH = "/home/mshahidul/readctrl/data/data_annotator_data/manual_selections_en.json"
SAVE_ROOT = "/home/mshahidul/readctrl/data/annotators_validate_data"
QUESTIONS_FILE = "/home/mshahidul/readctrl/code/interface/sp50_questions_en.json"
# --- SESSION CONFIGURATION ---
NUM_QUESTIONS = 20
NUM_DUPLICATES = 4
NUM_LITERACY_QUERIES = 10
DUPLICATE_INTERVAL = 8
# --- UPDATED ANNOTATION GUIDE TEXT (1-5 Scale) ---
GUIDE_HTML = """
<div style="background-color: #f9f9f9; padding: 15px; border-left: 6px solid #4CAF50; border-radius: 4px;">
<h3>Rating Guide: Medical Text Difficulty</h3>
<p>Please rate the difficulty of the documents based on the following 5-point scale:</p>
<table style="width:100%; border-collapse: collapse; text-align: left;">
<tr style="background-color: #e8f5e9;">
<th style="padding: 8px; border: 1px solid #ddd;">Score</th>
<th style="padding: 8px; border: 1px solid #ddd;">Description</th>
</tr>
<tr>
<td style="padding: 8px; border: 1px solid #ddd;"><b>1</b></td>
<td style="padding: 8px; border: 1px solid #ddd;"><b>Very Easy:</b> Simple words, no medical jargon. Clear to a child.</td>
</tr>
<tr>
<td style="padding: 8px; border: 1px solid #ddd;"><b>2</b></td>
<td style="padding: 8px; border: 1px solid #ddd;"><b>Easy:</b> Conversational medical terms (e.g., "flu", "broken bone").</td>
</tr>
<tr>
<td style="padding: 8px; border: 1px solid #ddd;"><b>3</b></td>
<td style="padding: 8px; border: 1px solid #ddd;"><b>Moderate:</b> Standard patient education material. Requires some focus.</td>
</tr>
<tr>
<td style="padding: 8px; border: 1px solid #ddd;"><b>4</b></td>
<td style="padding: 8px; border: 1px solid #ddd;"><b>Hard:</b> Significant technical jargon. Likely a clinical summary.</td>
</tr>
<tr>
<td style="padding: 8px; border: 1px solid #ddd;"><b>5</b></td>
<td style="padding: 8px; border: 1px solid #ddd;"><b>Very Hard:</b> Specialist-level / Academic. Extremely dense.</td>
</tr>
</table>
</div>
"""
# ... [Keep load_questions and AnnotationSession class same as your original code] ...
def load_questions():
with open(QUESTIONS_FILE, "r") as f:
all_q = json.load(f)
return random.sample(all_q, min(NUM_LITERACY_QUERIES, len(all_q)))
class AnnotationSession:
def __init__(self, dataset, questions):
base_samples = random.sample(dataset, NUM_QUESTIONS)
self.queue = list(base_samples)
for i in range(NUM_DUPLICATES):
self.queue.insert(DUPLICATE_INTERVAL + i, base_samples[i])
self.current_index = 0
self.results = []
self.questions = questions
self.session_folder = None
with open(DATA_PATH, "r") as f:
full_dataset = json.load(f)
session = AnnotationSession(full_dataset, load_questions())
def start_and_save_literacy(username, *answers):
clean_username = "".join([c for c in username if c.isalnum() or c in (' ', '_', '-')]).strip() or "anonymous"
timestamp = datetime.now().strftime("%Y-%m-%d_%H-%M-%S")
folder_name = f"{clean_username}_{timestamp}"
session_folder = os.path.join(SAVE_ROOT, folder_name)
os.makedirs(session_folder, exist_ok=True)
session.session_folder = session_folder
literacy_data = []
for i, ans in enumerate(answers):
q_info = session.questions[i]
literacy_data.append({
"question_id": q_info['id'],
"question_text": q_info['question'],
"user_answer": ans,
"is_correct": ans == q_info['correct']
})
with open(os.path.join(session_folder, "literacy_results.json"), "w") as f:
json.dump(literacy_data, f, indent=4)
first_pair = session.queue[0]
return (
gr.update(visible=False),
gr.update(visible=True),
first_pair['original_text'],
first_pair['selected_wiki_anchor'],
f"Item 1 of {len(session.queue)}"
)
def submit_rating(doc_slider, wiki_slider):
current_pair = session.queue[session.current_index]
result_entry = {
"queue_position": session.current_index,
"doc_id": current_pair.get('index', 'no_id'),
"health_literacy_label": current_pair.get('label', 'no_label'),
"doc_rating": doc_slider,
"wiki_rating": wiki_slider,
"is_duplicate": session.current_index >= DUPLICATE_INTERVAL and
session.current_index < (DUPLICATE_INTERVAL + NUM_DUPLICATES),
"timestamp": datetime.now().strftime("%Y-%m-%d %H:%M:%S")
}
session.results.append(result_entry)
annotation_file = os.path.join(session.session_folder, "annotation_results.json")
with open(annotation_file, "w") as f:
json.dump(session.results, f, indent=4)
gr.Info(f"Progress Saved: Item {session.current_index + 1}")
session.current_index += 1
if session.current_index < len(session.queue):
next_pair = session.queue[session.current_index]
return (
next_pair['original_text'],
next_pair['selected_wiki_anchor'],
f"Item {session.current_index + 1} of {len(session.queue)}",
3, 3 # Reset sliders to middle value (3) for the next item
)
else:
return (
"✅ ALL TASKS COMPLETED",
"The data has been saved to your session folder. You may close this tab.",
"Status: Finished",
1, 1
)
# --- UI ---
with gr.Blocks(theme=gr.themes.Soft()) as demo:
gr.Markdown("# Medical Text Readability Annotation")
with gr.Accordion("See Annotation Instructions & 1-5 Scale Guide", open=True):
gr.HTML(GUIDE_HTML)
with gr.Column(visible=True) as intro_box:
username_input = gr.Textbox(label="Enter Your Name/ID", placeholder="e.g., mshahidul", max_lines=1)
gr.Markdown(f"### Pre-Task: Health Literacy Check ({NUM_LITERACY_QUERIES} Questions)")
literacy_inputs = []
for q in session.questions:
radio = gr.Radio(choices=q['options'], label=q['question'])
literacy_inputs.append(radio)
btn_start = gr.Button("Start Annotation", variant="primary")
with gr.Column(visible=False) as task_box:
progress = gr.Label(label="Progress")
with gr.Row():
with gr.Column():
doc_display = gr.Textbox(interactive=False, lines=12, label="Text A")
# UPDATED: Range 1-5, Default value 3
doc_slider = gr.Slider(1, 5, step=1, label="Difficulty (1: Simple → 5: Technical)", value=3)
with gr.Column():
wiki_display = gr.Textbox(interactive=False, lines=12, label="Text B")
# UPDATED: Range 1-5, Default value 3
wiki_slider = gr.Slider(1, 5, step=1, label="Difficulty (1: Simple → 5: Technical)", value=3)
btn_submit = gr.Button("Submit & Next", variant="primary")
btn_start.click(
start_and_save_literacy,
inputs=[username_input] + literacy_inputs,
outputs=[intro_box, task_box, doc_display, wiki_display, progress]
)
btn_submit.click(
submit_rating,
inputs=[doc_slider, wiki_slider],
outputs=[doc_display, wiki_display, progress, doc_slider, wiki_slider]
)
demo.launch(share=True) |