File size: 7,596 Bytes
1db7196 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 | import gradio as gr
import json
import os
from datetime import datetime
# --- PATH CONFIGURATION ---
# DATA_PATH = "/home/mshahidul/readctrl/data/synthetic_dataset_diff_labels/syn_data_with_gs_summary_en_0_20.json"
DATA_PATH = "/home/mshahidul/readctrl/data/data_annotator_data/syn_data_diff_labels_en_0_80.json"
SAVE_ROOT = "/home/mshahidul/readctrl/data/annotators_validate_data_(20_80)"
os.makedirs(SAVE_ROOT, exist_ok=True)
# --- UI HTML COMPONENTS (Kept same as original) ---
GUIDE_HTML = """
<div style="background-color: #f9f9f9; padding: 15px; border-left: 6px solid #4CAF50; border-radius: 4px; margin-bottom: 20px;">
<h3>Rating Guide: Medical Text Difficulty</h3>
<table style="width:100%; border-collapse: collapse; text-align: left;">
<tr style="background-color: #e8f5e9;">
<th style="padding: 8px; border: 1px solid #ddd;">Score</th>
<th style="padding: 8px; border: 1px solid #ddd;">Description</th>
</tr>
<tr><td><b>1</b></td><td><b>Very Easy:</b> Simple words, no medical jargon.</td></tr>
<tr><td><b>2</b></td><td><b>Easy:</b> Conversational medical terms.</td></tr>
<tr><td><b>3</b></td><td><b>Moderate:</b> Standard patient education material.</td></tr>
<tr><td><b>4</b></td><td><b>Hard:</b> Significant technical jargon.</td></tr>
<tr><td><b>5</b></td><td><b>Very Hard:</b> Specialist-level / Academic.</td></tr>
</table>
</div>
"""
EXAMPLES_HTML = """
<div style="background-color: #ffffff; padding: 15px; border: 1px solid #ddd; border-radius: 4px;">
<h3 style="color: #2e7d32;">Reference Examples</h3>
<div style="display: flex; gap: 15px;">
<div style="flex: 1; background-color: #f1f8e9; padding: 10px; border-radius: 4px;">
<h4>Level 1-2</h4>
<p>"She had a kidney problem... a big blood clot blocked veins in her brain."</p>
</div>
<div style="flex: 1; background-color: #ffebee; padding: 10px; border-radius: 4px;">
<h4>Level 4-5</h4>
<p>"Idiopathic NS inaugurated by cerebral venous thrombosis extended to the right jugular vein."</p>
</div>
</div>
</div>
"""
# --- DATA LOADING ---
if os.path.exists(DATA_PATH):
with open(DATA_PATH, "r") as f:
FULL_DATASET = json.load(f)
FULL_DATASET=FULL_DATASET[60:]
else:
assert False, f"Data file not found at {DATA_PATH}"
# --- PERSISTENCE HELPERS ---
def get_user_dir(username):
clean_username = "".join([c for c in username if c.isalnum() or c in (' ', '_', '-')]).strip() or "anonymous"
return os.path.join(SAVE_ROOT, clean_username)
def save_state(user_dir, state_dict):
with open(os.path.join(user_dir, "state.json"), "w") as f:
json.dump(state_dict, f, indent=4)
def load_state(user_dir):
state_path = os.path.join(user_dir, "state.json")
if os.path.exists(state_path):
with open(state_path, "r") as f:
return json.load(f)
return None
# --- LOGIC FUNCTIONS ---
def get_current_ui_values(state):
"""Helper to get UI values for the current index, including previous ratings if they exist."""
idx = state['current_index']
current_item = state['queue'][idx]
# Check if we already have a rating for this specific index
existing_rating = 3 # Default
for res in state['results']:
if res['queue_position'] == idx:
existing_rating = res['rating']
break
progress = f"Item {idx + 1} of {len(state['queue'])}"
return current_item['generated_summary'], progress, existing_rating
def start_session(username):
if not username:
gr.Warning("Please enter a username!")
return [gr.update()] * 5
user_dir = get_user_dir(username)
os.makedirs(user_dir, exist_ok=True)
existing_state = load_state(user_dir)
if existing_state:
gr.Info(f"Welcome back! Resuming from item {existing_state['current_index'] + 1}.")
state = existing_state
else:
state = {
"username": username,
"current_index": 0,
"queue": list(FULL_DATASET),
"results": [],
"completed": False
}
save_state(user_dir, state)
text, progress, rating = get_current_ui_values(state)
return (gr.update(visible=False), gr.update(visible=True), text, progress, rating, state)
def submit_rating(doc_slider, state):
if state is None: return "", "Error", 3, 3, None
user_dir = get_user_dir(state['username'])
idx = state['current_index']
current_item = state['queue'][idx]
# Update existing rating if editing, otherwise append
new_result = {
"queue_position": idx,
"doc_id": current_item.get('index', 'no_id'),
"label": current_item.get('label', 'no_label'),
"rating": doc_slider,
"timestamp": datetime.now().strftime("%Y-%m-%d %H:%M:%S")
}
# Logic to overwrite existing rating for this index
state['results'] = [r for r in state['results'] if r['queue_position'] != idx]
state['results'].append(new_result)
state['results'].sort(key=lambda x: x['queue_position']) # Keep sorted
if idx + 1 < len(state['queue']):
state['current_index'] += 1
save_state(user_dir, state)
# Save results file
with open(os.path.join(user_dir, "annotation_results.json"), "w") as f:
json.dump(state['results'], f, indent=4)
text, progress, rating = get_current_ui_values(state)
return text, progress, rating, state
else:
state['completed'] = True
save_state(user_dir, state)
return "✅ ALL TASKS COMPLETED", "Status: Finished", 1, state
def go_back(state):
if state is None or state['current_index'] <= 0:
gr.Warning("Already at the first item.")
return [gr.update()] * 3 + [state]
state['current_index'] -= 1
text, progress, rating = get_current_ui_values(state)
return text, progress, rating, state
# --- UI INTERFACE ---
with gr.Blocks(theme=gr.themes.Soft()) as demo:
session_state = gr.State()
gr.Markdown("# Medical Text Readability Annotation")
with gr.Accordion("Instructions & Calibration", open=False):
gr.HTML(GUIDE_HTML)
gr.HTML(EXAMPLES_HTML)
with gr.Column(visible=True) as intro_box:
username_input = gr.Textbox(label="Enter Your Name/ID", placeholder="e.g., user_101")
btn_start = gr.Button("Start / Resume Annotation", variant="primary")
with gr.Column(visible=False) as task_box:
progress_label = gr.Label(label="Overall Progress")
doc_display = gr.Textbox(interactive=False, lines=12, label="Medical Text")
doc_slider = gr.Slider(1, 5, step=1, label="Difficulty (1=Easy, 5=Hard)", value=3)
with gr.Row():
btn_prev = gr.Button("⬅️ Previous", variant="secondary")
btn_submit = gr.Button("Submit & Next ➡️", variant="primary")
# --- EVENT HANDLERS ---
btn_start.click(
fn=start_session,
inputs=[username_input],
outputs=[intro_box, task_box, doc_display, progress_label, doc_slider, session_state]
)
btn_submit.click(
fn=submit_rating,
inputs=[doc_slider, session_state],
outputs=[doc_display, progress_label, doc_slider, session_state]
)
btn_prev.click(
fn=go_back,
inputs=[session_state],
outputs=[doc_display, progress_label, doc_slider, session_state]
)
if __name__ == "__main__":
demo.launch(share=True) |