Delete folder NIH after moving to output/

NIH/resnet50/seed0/NIH_train_classifier_configs.pkl

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:fdae910a07a3d347d8d73146035de10df45e84012bdd20af489ec132169ef8fd
-size 1171

NIH/resnet50/seed0/chk_pt-best-auc0.8674.pt

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:1e1711c0a580d189df0d1df0172bea1536d4444d745320b911924e5fe15f45fa
-size 94382301

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/aligner_200.pth

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:e3a973ad60846104047f9f18636e831c0e58cead628603eff466d81fc046bfcc
-size 4197808

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/aligner_out.txt

@@ -1,208 +0,0 @@
-2024-10-27 04:25:48,919 - Train size: classifier [(82120, 2048)], clip [(82120, 512)]
-2024-10-27 04:25:48,919 - Valid size: classifier [(20000, 2048)], clip [(20000, 512)]
-2024-10-27 04:25:48,920 - Training linear aligner ...
-2024-10-27 04:25:48,920 - Linear alignment train: ((82120, 2048)) --> ((82120, 512)).
-2024-10-27 04:25:48,920 - Linear alignment test: ((20000, 2048)) --> ((20000, 512)).
-2024-10-27 04:25:52,887 - Initial MSE, R^2: 9.859, -1.191
-2024-10-27 04:25:54,677 - Epoch number, 0, train loss: 2.488, test MSE: 2.279, test_r2: 0.493, best MSE: 2.279
-2024-10-27 04:25:56,466 - Epoch number, 1, train loss: 2.160, test MSE: 2.227, test_r2: 0.505, best MSE: 2.227
-2024-10-27 04:25:58,321 - Epoch number, 2, train loss: 2.071, test MSE: 2.170, test_r2: 0.518, best MSE: 2.170
-2024-10-27 04:26:00,169 - Epoch number, 3, train loss: 2.031, test MSE: 2.188, test_r2: 0.514, best MSE: 2.170
-2024-10-27 04:26:02,132 - Epoch number, 4, train loss: 2.001, test MSE: 2.023, test_r2: 0.550, best MSE: 2.023
-2024-10-27 04:26:03,890 - Epoch number, 5, train loss: 1.980, test MSE: 2.015, test_r2: 0.552, best MSE: 2.015
-2024-10-27 04:26:05,589 - Epoch number, 6, train loss: 1.959, test MSE: 2.040, test_r2: 0.547, best MSE: 2.015
-2024-10-27 04:26:07,553 - Epoch number, 7, train loss: 1.946, test MSE: 2.061, test_r2: 0.542, best MSE: 2.015
-2024-10-27 04:26:09,423 - Epoch number, 8, train loss: 1.936, test MSE: 2.001, test_r2: 0.555, best MSE: 2.001
-2024-10-27 04:26:11,285 - Epoch number, 9, train loss: 1.925, test MSE: 2.032, test_r2: 0.548, best MSE: 2.001
-2024-10-27 04:26:13,245 - Epoch number, 10, train loss: 1.926, test MSE: 2.040, test_r2: 0.547, best MSE: 2.001
-2024-10-27 04:26:15,694 - Epoch number, 11, train loss: 1.916, test MSE: 1.986, test_r2: 0.559, best MSE: 1.986
-2024-10-27 04:26:17,686 - Epoch number, 12, train loss: 1.918, test MSE: 2.008, test_r2: 0.554, best MSE: 1.986
-2024-10-27 04:26:20,085 - Epoch number, 13, train loss: 1.910, test MSE: 2.012, test_r2: 0.553, best MSE: 1.986
-2024-10-27 04:26:21,917 - Epoch number, 14, train loss: 1.903, test MSE: 1.958, test_r2: 0.565, best MSE: 1.958
-2024-10-27 04:26:23,746 - Epoch number, 15, train loss: 1.903, test MSE: 1.980, test_r2: 0.560, best MSE: 1.958
-2024-10-27 04:26:25,532 - Epoch number, 16, train loss: 1.895, test MSE: 1.932, test_r2: 0.571, best MSE: 1.932
-2024-10-27 04:26:27,462 - Epoch number, 17, train loss: 1.895, test MSE: 2.032, test_r2: 0.548, best MSE: 1.932
-2024-10-27 04:26:29,616 - Epoch number, 18, train loss: 1.899, test MSE: 2.052, test_r2: 0.544, best MSE: 1.932
-2024-10-27 04:26:31,398 - Epoch number, 19, train loss: 1.895, test MSE: 2.041, test_r2: 0.546, best MSE: 1.932
-2024-10-27 04:26:33,225 - Epoch number, 20, train loss: 1.889, test MSE: 2.036, test_r2: 0.548, best MSE: 1.932
-2024-10-27 04:26:35,096 - Epoch number, 21, train loss: 1.892, test MSE: 2.131, test_r2: 0.527, best MSE: 1.932
-2024-10-27 04:26:36,808 - Epoch number, 22, train loss: 1.890, test MSE: 1.937, test_r2: 0.570, best MSE: 1.932
-2024-10-27 04:26:38,549 - Epoch number, 23, train loss: 1.887, test MSE: 1.968, test_r2: 0.563, best MSE: 1.932
-2024-10-27 04:26:40,504 - Epoch number, 24, train loss: 1.885, test MSE: 2.069, test_r2: 0.540, best MSE: 1.932
-2024-10-27 04:26:43,365 - Epoch number, 25, train loss: 1.887, test MSE: 2.002, test_r2: 0.555, best MSE: 1.932
-2024-10-27 04:26:45,285 - Epoch number, 26, train loss: 1.883, test MSE: 1.973, test_r2: 0.561, best MSE: 1.932
-2024-10-27 04:26:47,062 - Epoch number, 27, train loss: 1.881, test MSE: 2.058, test_r2: 0.543, best MSE: 1.932
-2024-10-27 04:26:48,768 - Epoch number, 28, train loss: 1.885, test MSE: 2.061, test_r2: 0.542, best MSE: 1.932
-2024-10-27 04:26:50,577 - Epoch number, 29, train loss: 1.881, test MSE: 1.967, test_r2: 0.563, best MSE: 1.932
-2024-10-27 04:26:52,206 - Epoch number, 30, train loss: 1.878, test MSE: 1.961, test_r2: 0.564, best MSE: 1.932
-2024-10-27 04:26:53,861 - Epoch number, 31, train loss: 1.883, test MSE: 1.977, test_r2: 0.561, best MSE: 1.932
-2024-10-27 04:26:55,704 - Epoch number, 32, train loss: 1.877, test MSE: 1.989, test_r2: 0.558, best MSE: 1.932
-2024-10-27 04:26:57,661 - Epoch number, 33, train loss: 1.878, test MSE: 1.956, test_r2: 0.565, best MSE: 1.932
-2024-10-27 04:26:59,379 - Epoch number, 34, train loss: 1.877, test MSE: 1.984, test_r2: 0.559, best MSE: 1.932
-2024-10-27 04:27:01,125 - Epoch number, 35, train loss: 1.872, test MSE: 1.973, test_r2: 0.562, best MSE: 1.932
-2024-10-27 04:27:02,836 - Epoch number, 36, train loss: 1.873, test MSE: 1.956, test_r2: 0.565, best MSE: 1.932
-2024-10-27 04:27:04,506 - Epoch number, 37, train loss: 1.869, test MSE: 1.932, test_r2: 0.571, best MSE: 1.932
-2024-10-27 04:27:06,270 - Epoch number, 38, train loss: 1.873, test MSE: 2.065, test_r2: 0.541, best MSE: 1.932
-2024-10-27 04:27:07,962 - Epoch number, 39, train loss: 1.873, test MSE: 1.970, test_r2: 0.562, best MSE: 1.932
-2024-10-27 04:27:09,675 - Epoch number, 40, train loss: 1.870, test MSE: 1.902, test_r2: 0.577, best MSE: 1.902
-2024-10-27 04:27:11,475 - Epoch number, 41, train loss: 1.867, test MSE: 1.946, test_r2: 0.568, best MSE: 1.902
-2024-10-27 04:27:13,280 - Epoch number, 42, train loss: 1.872, test MSE: 2.071, test_r2: 0.540, best MSE: 1.902
-2024-10-27 04:27:15,026 - Epoch number, 43, train loss: 1.868, test MSE: 2.021, test_r2: 0.551, best MSE: 1.902
-2024-10-27 04:27:16,803 - Epoch number, 44, train loss: 1.866, test MSE: 1.951, test_r2: 0.567, best MSE: 1.902
-2024-10-27 04:27:18,503 - Epoch number, 45, train loss: 1.865, test MSE: 1.960, test_r2: 0.564, best MSE: 1.902
-2024-10-27 04:27:20,184 - Epoch number, 46, train loss: 1.867, test MSE: 2.018, test_r2: 0.551, best MSE: 1.902
-2024-10-27 04:27:21,861 - Epoch number, 47, train loss: 1.858, test MSE: 1.979, test_r2: 0.560, best MSE: 1.902
-2024-10-27 04:27:23,530 - Epoch number, 48, train loss: 1.859, test MSE: 1.944, test_r2: 0.568, best MSE: 1.902
-2024-10-27 04:27:25,310 - Epoch number, 49, train loss: 1.857, test MSE: 1.956, test_r2: 0.565, best MSE: 1.902
-2024-10-27 04:27:27,089 - Epoch number, 50, train loss: 1.862, test MSE: 1.929, test_r2: 0.571, best MSE: 1.902
-2024-10-27 04:27:28,885 - Epoch number, 51, train loss: 1.857, test MSE: 1.998, test_r2: 0.556, best MSE: 1.902
-2024-10-27 04:27:30,618 - Epoch number, 52, train loss: 1.853, test MSE: 1.905, test_r2: 0.577, best MSE: 1.902
-2024-10-27 04:27:32,347 - Epoch number, 53, train loss: 1.854, test MSE: 1.901, test_r2: 0.577, best MSE: 1.901
-2024-10-27 04:27:34,090 - Epoch number, 54, train loss: 1.858, test MSE: 1.941, test_r2: 0.569, best MSE: 1.901
-2024-10-27 04:27:35,727 - Epoch number, 55, train loss: 1.851, test MSE: 1.917, test_r2: 0.574, best MSE: 1.901
-2024-10-27 04:27:37,358 - Epoch number, 56, train loss: 1.852, test MSE: 1.983, test_r2: 0.559, best MSE: 1.901
-2024-10-27 04:27:39,360 - Epoch number, 57, train loss: 1.849, test MSE: 1.894, test_r2: 0.579, best MSE: 1.894
-2024-10-27 04:27:41,090 - Epoch number, 58, train loss: 1.845, test MSE: 1.930, test_r2: 0.571, best MSE: 1.894
-2024-10-27 04:27:42,852 - Epoch number, 59, train loss: 1.848, test MSE: 1.909, test_r2: 0.576, best MSE: 1.894
-2024-10-27 04:27:44,701 - Epoch number, 60, train loss: 1.848, test MSE: 1.961, test_r2: 0.564, best MSE: 1.894
-2024-10-27 04:27:46,418 - Epoch number, 61, train loss: 1.847, test MSE: 1.923, test_r2: 0.573, best MSE: 1.894
-2024-10-27 04:27:48,200 - Epoch number, 62, train loss: 1.846, test MSE: 1.919, test_r2: 0.574, best MSE: 1.894
-2024-10-27 04:27:49,998 - Epoch number, 63, train loss: 1.841, test MSE: 1.947, test_r2: 0.567, best MSE: 1.894
-2024-10-27 04:27:51,724 - Epoch number, 64, train loss: 1.843, test MSE: 1.902, test_r2: 0.577, best MSE: 1.894
-2024-10-27 04:27:53,574 - Epoch number, 65, train loss: 1.839, test MSE: 1.898, test_r2: 0.578, best MSE: 1.894
-2024-10-27 04:27:55,300 - Epoch number, 66, train loss: 1.841, test MSE: 1.891, test_r2: 0.580, best MSE: 1.891
-2024-10-27 04:27:57,014 - Epoch number, 67, train loss: 1.840, test MSE: 1.906, test_r2: 0.576, best MSE: 1.891
-2024-10-27 04:27:58,678 - Epoch number, 68, train loss: 1.839, test MSE: 1.930, test_r2: 0.571, best MSE: 1.891
-2024-10-27 04:28:00,478 - Epoch number, 69, train loss: 1.836, test MSE: 1.899, test_r2: 0.578, best MSE: 1.891
-2024-10-27 04:28:02,255 - Epoch number, 70, train loss: 1.837, test MSE: 1.916, test_r2: 0.574, best MSE: 1.891
-2024-10-27 04:28:04,029 - Epoch number, 71, train loss: 1.836, test MSE: 1.932, test_r2: 0.571, best MSE: 1.891
-2024-10-27 04:28:05,747 - Epoch number, 72, train loss: 1.835, test MSE: 1.932, test_r2: 0.571, best MSE: 1.891
-2024-10-27 04:28:07,464 - Epoch number, 73, train loss: 1.833, test MSE: 1.890, test_r2: 0.580, best MSE: 1.890
-2024-10-27 04:28:09,106 - Epoch number, 74, train loss: 1.831, test MSE: 1.876, test_r2: 0.583, best MSE: 1.876
-2024-10-27 04:28:10,812 - Epoch number, 75, train loss: 1.828, test MSE: 1.882, test_r2: 0.582, best MSE: 1.876
-2024-10-27 04:28:12,466 - Epoch number, 76, train loss: 1.830, test MSE: 1.908, test_r2: 0.576, best MSE: 1.876
-2024-10-27 04:28:14,090 - Epoch number, 77, train loss: 1.827, test MSE: 1.900, test_r2: 0.578, best MSE: 1.876
-2024-10-27 04:28:15,695 - Epoch number, 78, train loss: 1.826, test MSE: 1.906, test_r2: 0.576, best MSE: 1.876
-2024-10-27 04:28:17,365 - Epoch number, 79, train loss: 1.826, test MSE: 1.972, test_r2: 0.562, best MSE: 1.876
-2024-10-27 04:28:19,083 - Epoch number, 80, train loss: 1.822, test MSE: 1.936, test_r2: 0.570, best MSE: 1.876
-2024-10-27 04:28:20,740 - Epoch number, 81, train loss: 1.826, test MSE: 1.854, test_r2: 0.588, best MSE: 1.854
-2024-10-27 04:28:22,454 - Epoch number, 82, train loss: 1.822, test MSE: 1.885, test_r2: 0.581, best MSE: 1.854
-2024-10-27 04:28:24,147 - Epoch number, 83, train loss: 1.824, test MSE: 1.883, test_r2: 0.582, best MSE: 1.854
-2024-10-27 04:28:25,792 - Epoch number, 84, train loss: 1.818, test MSE: 1.909, test_r2: 0.576, best MSE: 1.854
-2024-10-27 04:28:27,429 - Epoch number, 85, train loss: 1.816, test MSE: 1.887, test_r2: 0.581, best MSE: 1.854
-2024-10-27 04:28:29,065 - Epoch number, 86, train loss: 1.817, test MSE: 1.868, test_r2: 0.585, best MSE: 1.854
-2024-10-27 04:28:30,696 - Epoch number, 87, train loss: 1.812, test MSE: 1.869, test_r2: 0.585, best MSE: 1.854
-2024-10-27 04:28:32,382 - Epoch number, 88, train loss: 1.814, test MSE: 1.901, test_r2: 0.578, best MSE: 1.854
-2024-10-27 04:28:34,086 - Epoch number, 89, train loss: 1.812, test MSE: 1.893, test_r2: 0.579, best MSE: 1.854
-2024-10-27 04:28:35,922 - Epoch number, 90, train loss: 1.812, test MSE: 1.887, test_r2: 0.581, best MSE: 1.854
-2024-10-27 04:28:37,623 - Epoch number, 91, train loss: 1.809, test MSE: 1.881, test_r2: 0.582, best MSE: 1.854
-2024-10-27 04:28:39,339 - Epoch number, 92, train loss: 1.808, test MSE: 1.867, test_r2: 0.585, best MSE: 1.854
-2024-10-27 04:28:41,021 - Epoch number, 93, train loss: 1.807, test MSE: 1.853, test_r2: 0.588, best MSE: 1.853
-2024-10-27 04:28:42,672 - Epoch number, 94, train loss: 1.806, test MSE: 1.875, test_r2: 0.583, best MSE: 1.853
-2024-10-27 04:28:44,355 - Epoch number, 95, train loss: 1.803, test MSE: 1.880, test_r2: 0.582, best MSE: 1.853
-2024-10-27 04:28:46,208 - Epoch number, 96, train loss: 1.804, test MSE: 1.870, test_r2: 0.584, best MSE: 1.853
-2024-10-27 04:28:47,907 - Epoch number, 97, train loss: 1.800, test MSE: 1.843, test_r2: 0.590, best MSE: 1.843
-2024-10-27 04:28:49,600 - Epoch number, 98, train loss: 1.803, test MSE: 1.882, test_r2: 0.582, best MSE: 1.843
-2024-10-27 04:28:51,286 - Epoch number, 99, train loss: 1.801, test MSE: 1.875, test_r2: 0.583, best MSE: 1.843
-2024-10-27 04:28:52,977 - Epoch number, 100, train loss: 1.799, test MSE: 1.866, test_r2: 0.585, best MSE: 1.843
-2024-10-27 04:28:54,651 - Epoch number, 101, train loss: 1.799, test MSE: 1.863, test_r2: 0.586, best MSE: 1.843
-2024-10-27 04:28:56,352 - Epoch number, 102, train loss: 1.797, test MSE: 1.841, test_r2: 0.591, best MSE: 1.841
-2024-10-27 04:28:58,050 - Epoch number, 103, train loss: 1.796, test MSE: 1.857, test_r2: 0.587, best MSE: 1.841
-2024-10-27 04:28:59,692 - Epoch number, 104, train loss: 1.795, test MSE: 1.841, test_r2: 0.591, best MSE: 1.841
-2024-10-27 04:29:01,782 - Epoch number, 105, train loss: 1.793, test MSE: 1.851, test_r2: 0.589, best MSE: 1.841
-2024-10-27 04:29:03,491 - Epoch number, 106, train loss: 1.793, test MSE: 1.871, test_r2: 0.584, best MSE: 1.841
-2024-10-27 04:29:05,331 - Epoch number, 107, train loss: 1.791, test MSE: 1.855, test_r2: 0.588, best MSE: 1.841
-2024-10-27 04:29:06,998 - Epoch number, 108, train loss: 1.789, test MSE: 1.845, test_r2: 0.590, best MSE: 1.841
-2024-10-27 04:29:08,766 - Epoch number, 109, train loss: 1.789, test MSE: 1.853, test_r2: 0.588, best MSE: 1.841
-2024-10-27 04:29:10,466 - Epoch number, 110, train loss: 1.788, test MSE: 1.868, test_r2: 0.585, best MSE: 1.841
-2024-10-27 04:29:12,131 - Epoch number, 111, train loss: 1.788, test MSE: 1.824, test_r2: 0.595, best MSE: 1.824
-2024-10-27 04:29:14,029 - Epoch number, 112, train loss: 1.785, test MSE: 1.836, test_r2: 0.592, best MSE: 1.824
-2024-10-27 04:29:15,748 - Epoch number, 113, train loss: 1.783, test MSE: 1.835, test_r2: 0.592, best MSE: 1.824
-2024-10-27 04:29:17,390 - Epoch number, 114, train loss: 1.781, test MSE: 1.834, test_r2: 0.593, best MSE: 1.824
-2024-10-27 04:29:19,071 - Epoch number, 115, train loss: 1.782, test MSE: 1.845, test_r2: 0.590, best MSE: 1.824
-2024-10-27 04:29:20,712 - Epoch number, 116, train loss: 1.781, test MSE: 1.833, test_r2: 0.593, best MSE: 1.824
-2024-10-27 04:29:22,365 - Epoch number, 117, train loss: 1.778, test MSE: 1.823, test_r2: 0.595, best MSE: 1.823
-2024-10-27 04:29:24,036 - Epoch number, 118, train loss: 1.780, test MSE: 1.827, test_r2: 0.594, best MSE: 1.823
-2024-10-27 04:29:25,717 - Epoch number, 119, train loss: 1.778, test MSE: 1.838, test_r2: 0.592, best MSE: 1.823
-2024-10-27 04:29:27,720 - Epoch number, 120, train loss: 1.776, test MSE: 1.833, test_r2: 0.593, best MSE: 1.823
-2024-10-27 04:29:29,412 - Epoch number, 121, train loss: 1.776, test MSE: 1.837, test_r2: 0.592, best MSE: 1.823
-2024-10-27 04:29:31,070 - Epoch number, 122, train loss: 1.775, test MSE: 1.828, test_r2: 0.594, best MSE: 1.823
-2024-10-27 04:29:32,725 - Epoch number, 123, train loss: 1.773, test MSE: 1.820, test_r2: 0.596, best MSE: 1.820
-2024-10-27 04:29:34,489 - Epoch number, 124, train loss: 1.772, test MSE: 1.826, test_r2: 0.594, best MSE: 1.820
-2024-10-27 04:29:36,267 - Epoch number, 125, train loss: 1.772, test MSE: 1.851, test_r2: 0.589, best MSE: 1.820
-2024-10-27 04:29:37,867 - Epoch number, 126, train loss: 1.770, test MSE: 1.826, test_r2: 0.594, best MSE: 1.820
-2024-10-27 04:29:39,486 - Epoch number, 127, train loss: 1.770, test MSE: 1.817, test_r2: 0.596, best MSE: 1.817
-2024-10-27 04:29:41,612 - Epoch number, 128, train loss: 1.768, test MSE: 1.829, test_r2: 0.594, best MSE: 1.817
-2024-10-27 04:29:43,351 - Epoch number, 129, train loss: 1.767, test MSE: 1.826, test_r2: 0.594, best MSE: 1.817
-2024-10-27 04:29:45,154 - Epoch number, 130, train loss: 1.767, test MSE: 1.812, test_r2: 0.597, best MSE: 1.812
-2024-10-27 04:29:46,826 - Epoch number, 131, train loss: 1.765, test MSE: 1.815, test_r2: 0.597, best MSE: 1.812
-2024-10-27 04:29:48,558 - Epoch number, 132, train loss: 1.765, test MSE: 1.814, test_r2: 0.597, best MSE: 1.812
-2024-10-27 04:29:50,275 - Epoch number, 133, train loss: 1.764, test MSE: 1.815, test_r2: 0.597, best MSE: 1.812
-2024-10-27 04:29:51,941 - Epoch number, 134, train loss: 1.762, test MSE: 1.821, test_r2: 0.595, best MSE: 1.812
-2024-10-27 04:29:53,594 - Epoch number, 135, train loss: 1.763, test MSE: 1.814, test_r2: 0.597, best MSE: 1.812
-2024-10-27 04:29:55,368 - Epoch number, 136, train loss: 1.761, test MSE: 1.807, test_r2: 0.598, best MSE: 1.807
-2024-10-27 04:29:57,016 - Epoch number, 137, train loss: 1.761, test MSE: 1.805, test_r2: 0.599, best MSE: 1.805
-2024-10-27 04:29:58,710 - Epoch number, 138, train loss: 1.759, test MSE: 1.820, test_r2: 0.595, best MSE: 1.805
-2024-10-27 04:30:00,361 - Epoch number, 139, train loss: 1.759, test MSE: 1.809, test_r2: 0.598, best MSE: 1.805
-2024-10-27 04:30:02,098 - Epoch number, 140, train loss: 1.758, test MSE: 1.815, test_r2: 0.597, best MSE: 1.805
-2024-10-27 04:30:03,786 - Epoch number, 141, train loss: 1.757, test MSE: 1.801, test_r2: 0.600, best MSE: 1.801
-2024-10-27 04:30:05,529 - Epoch number, 142, train loss: 1.756, test MSE: 1.808, test_r2: 0.598, best MSE: 1.801
-2024-10-27 04:30:07,179 - Epoch number, 143, train loss: 1.754, test MSE: 1.808, test_r2: 0.598, best MSE: 1.801
-2024-10-27 04:30:09,097 - Epoch number, 144, train loss: 1.754, test MSE: 1.805, test_r2: 0.599, best MSE: 1.801
-2024-10-27 04:30:10,823 - Epoch number, 145, train loss: 1.753, test MSE: 1.809, test_r2: 0.598, best MSE: 1.801
-2024-10-27 04:30:12,549 - Epoch number, 146, train loss: 1.753, test MSE: 1.804, test_r2: 0.599, best MSE: 1.801
-2024-10-27 04:30:14,174 - Epoch number, 147, train loss: 1.751, test MSE: 1.806, test_r2: 0.599, best MSE: 1.801
-2024-10-27 04:30:15,796 - Epoch number, 148, train loss: 1.751, test MSE: 1.797, test_r2: 0.601, best MSE: 1.797
-2024-10-27 04:30:17,980 - Epoch number, 149, train loss: 1.750, test MSE: 1.806, test_r2: 0.599, best MSE: 1.797
-2024-10-27 04:30:19,657 - Epoch number, 150, train loss: 1.749, test MSE: 1.802, test_r2: 0.599, best MSE: 1.797
-2024-10-27 04:30:21,341 - Epoch number, 151, train loss: 1.749, test MSE: 1.801, test_r2: 0.600, best MSE: 1.797
-2024-10-27 04:30:23,133 - Epoch number, 152, train loss: 1.748, test MSE: 1.801, test_r2: 0.600, best MSE: 1.797
-2024-10-27 04:30:24,808 - Epoch number, 153, train loss: 1.748, test MSE: 1.798, test_r2: 0.600, best MSE: 1.797
-2024-10-27 04:30:26,504 - Epoch number, 154, train loss: 1.746, test MSE: 1.801, test_r2: 0.600, best MSE: 1.797
-2024-10-27 04:30:28,124 - Epoch number, 155, train loss: 1.746, test MSE: 1.797, test_r2: 0.601, best MSE: 1.797
-2024-10-27 04:30:29,758 - Epoch number, 156, train loss: 1.746, test MSE: 1.796, test_r2: 0.601, best MSE: 1.796
-2024-10-27 04:30:31,535 - Epoch number, 157, train loss: 1.745, test MSE: 1.794, test_r2: 0.601, best MSE: 1.794
-2024-10-27 04:30:33,358 - Epoch number, 158, train loss: 1.744, test MSE: 1.800, test_r2: 0.600, best MSE: 1.794
-2024-10-27 04:30:35,021 - Epoch number, 159, train loss: 1.744, test MSE: 1.794, test_r2: 0.601, best MSE: 1.794
-2024-10-27 04:30:37,132 - Epoch number, 160, train loss: 1.743, test MSE: 1.792, test_r2: 0.602, best MSE: 1.792
-2024-10-27 04:30:38,884 - Epoch number, 161, train loss: 1.742, test MSE: 1.796, test_r2: 0.601, best MSE: 1.792
-2024-10-27 04:30:40,588 - Epoch number, 162, train loss: 1.742, test MSE: 1.792, test_r2: 0.602, best MSE: 1.792
-2024-10-27 04:30:42,354 - Epoch number, 163, train loss: 1.741, test MSE: 1.795, test_r2: 0.601, best MSE: 1.792
-2024-10-27 04:30:43,999 - Epoch number, 164, train loss: 1.740, test MSE: 1.794, test_r2: 0.601, best MSE: 1.792
-2024-10-27 04:30:45,705 - Epoch number, 165, train loss: 1.740, test MSE: 1.792, test_r2: 0.602, best MSE: 1.792
-2024-10-27 04:30:47,376 - Epoch number, 166, train loss: 1.739, test MSE: 1.793, test_r2: 0.602, best MSE: 1.792
-2024-10-27 04:30:49,027 - Epoch number, 167, train loss: 1.739, test MSE: 1.792, test_r2: 0.602, best MSE: 1.792
-2024-10-27 04:30:51,317 - Epoch number, 168, train loss: 1.738, test MSE: 1.790, test_r2: 0.602, best MSE: 1.790
-2024-10-27 04:30:53,079 - Epoch number, 169, train loss: 1.738, test MSE: 1.791, test_r2: 0.602, best MSE: 1.790
-2024-10-27 04:30:54,858 - Epoch number, 170, train loss: 1.737, test MSE: 1.789, test_r2: 0.602, best MSE: 1.789
-2024-10-27 04:30:56,563 - Epoch number, 171, train loss: 1.737, test MSE: 1.790, test_r2: 0.602, best MSE: 1.789
-2024-10-27 04:30:58,290 - Epoch number, 172, train loss: 1.737, test MSE: 1.791, test_r2: 0.602, best MSE: 1.789
-2024-10-27 04:30:59,934 - Epoch number, 173, train loss: 1.736, test MSE: 1.788, test_r2: 0.603, best MSE: 1.788
-2024-10-27 04:31:01,583 - Epoch number, 174, train loss: 1.736, test MSE: 1.789, test_r2: 0.602, best MSE: 1.788
-2024-10-27 04:31:03,198 - Epoch number, 175, train loss: 1.735, test MSE: 1.790, test_r2: 0.602, best MSE: 1.788
-2024-10-27 04:31:05,071 - Epoch number, 176, train loss: 1.735, test MSE: 1.788, test_r2: 0.603, best MSE: 1.788
-2024-10-27 04:31:06,924 - Epoch number, 177, train loss: 1.735, test MSE: 1.788, test_r2: 0.603, best MSE: 1.788
-2024-10-27 04:31:08,763 - Epoch number, 178, train loss: 1.734, test MSE: 1.788, test_r2: 0.603, best MSE: 1.788
-2024-10-27 04:31:10,473 - Epoch number, 179, train loss: 1.734, test MSE: 1.788, test_r2: 0.603, best MSE: 1.788
-2024-10-27 04:31:12,137 - Epoch number, 180, train loss: 1.733, test MSE: 1.788, test_r2: 0.603, best MSE: 1.788
-2024-10-27 04:31:13,769 - Epoch number, 181, train loss: 1.733, test MSE: 1.787, test_r2: 0.603, best MSE: 1.787
-2024-10-27 04:31:15,403 - Epoch number, 182, train loss: 1.733, test MSE: 1.787, test_r2: 0.603, best MSE: 1.787
-2024-10-27 04:31:17,051 - Epoch number, 183, train loss: 1.733, test MSE: 1.787, test_r2: 0.603, best MSE: 1.787
-2024-10-27 04:31:19,415 - Epoch number, 184, train loss: 1.732, test MSE: 1.787, test_r2: 0.603, best MSE: 1.787
-2024-10-27 04:31:21,116 - Epoch number, 185, train loss: 1.732, test MSE: 1.786, test_r2: 0.603, best MSE: 1.786
-2024-10-27 04:31:22,768 - Epoch number, 186, train loss: 1.732, test MSE: 1.787, test_r2: 0.603, best MSE: 1.786
-2024-10-27 04:31:24,434 - Epoch number, 187, train loss: 1.732, test MSE: 1.786, test_r2: 0.603, best MSE: 1.786
-2024-10-27 04:31:26,100 - Epoch number, 188, train loss: 1.731, test MSE: 1.786, test_r2: 0.603, best MSE: 1.786
-2024-10-27 04:31:27,790 - Epoch number, 189, train loss: 1.731, test MSE: 1.786, test_r2: 0.603, best MSE: 1.786
-2024-10-27 04:31:29,450 - Epoch number, 190, train loss: 1.731, test MSE: 1.786, test_r2: 0.603, best MSE: 1.786
-2024-10-27 04:31:31,117 - Epoch number, 191, train loss: 1.731, test MSE: 1.786, test_r2: 0.603, best MSE: 1.786
-2024-10-27 04:31:33,445 - Epoch number, 192, train loss: 1.730, test MSE: 1.786, test_r2: 0.603, best MSE: 1.786
-2024-10-27 04:31:35,192 - Epoch number, 193, train loss: 1.730, test MSE: 1.786, test_r2: 0.603, best MSE: 1.786
-2024-10-27 04:31:36,824 - Epoch number, 194, train loss: 1.730, test MSE: 1.785, test_r2: 0.603, best MSE: 1.785
-2024-10-27 04:31:38,514 - Epoch number, 195, train loss: 1.730, test MSE: 1.785, test_r2: 0.603, best MSE: 1.785
-2024-10-27 04:31:40,204 - Epoch number, 196, train loss: 1.730, test MSE: 1.785, test_r2: 0.603, best MSE: 1.785
-2024-10-27 04:31:41,841 - Epoch number, 197, train loss: 1.730, test MSE: 1.785, test_r2: 0.603, best MSE: 1.785
-2024-10-27 04:31:43,530 - Epoch number, 198, train loss: 1.730, test MSE: 1.785, test_r2: 0.603, best MSE: 1.785
-2024-10-27 04:31:45,191 - Epoch number, 199, train loss: 1.730, test MSE: 1.785, test_r2: 0.603, best MSE: 1.785
-2024-10-27 04:31:45,210 - Aligner weights saved to /restricted/projectnb/batmanlab/shawn24/PhD/Ladder/out/NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/aligner_200.pth
-2024-10-27 04:31:45,211 - Saved aligner to /restricted/projectnb/batmanlab/shawn24/PhD/Ladder/out/NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/all_slices_y_ensemble_yes_H1_chest tubes.pth

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:4b28f1f6619929f823c2ca3be92ff0bd8d53037d8b5c3d0626ec6b201be432b2
-size 94373942

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/all_slices_y_ensemble_yes_H1_presence of chest tubes.pth

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:a5ee3bbb087603290705df43e7827148ec239e5a23ae518dec1ce0ef0ce60b8b
-size 94377830

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/all_slices_y_ensemble_yes_H2_fluid in pneumothorax.pth

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:7a824c0a77b0f69bc638b6f67f81427cdae309d81bb17ff84b4d2bfa6b92665e
-size 94377182

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/all_slices_y_ensemble_yes_H2_loculated pneumothorax.pth

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:8a82f0e54920520d4bc530b28964ac790132f045cda0aa48f76636a741432347
-size 94377506

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/all_slices_y_ensemble_yes_H3_changes in fluid and air levels.pth

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:7cd1932c84ab08012705af7b3eff431b4f073c4d58efd46c901075a42984b818
-size 94380486

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/all_slices_y_ensemble_yes_H3_size and location.pth

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:3c22f6fd8a7e1ecb7561dc7175b91cd7f95aaa4bf97698997a6b05a294129f8a
-size 94375886

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/all_slices_y_ensemble_yes_H4_interval changes.pth

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:41b5f55ab2115d9b83e825cac486735aed58c740d8896270e57ba8171a6e51ba
-size 94375562

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/all_slices_y_ensemble_yes_H4_pleural effusion.pth

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:56f1d49829eab73a31ec3dcd57e61ebf97e4059e4970bacb86c484083028bad1
-size 94375562

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/all_slices_y_ensemble_yes_H5_pleural effusion.pth

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:41663db1a49ca0689c46f3ed8d88c53d2a5e408b90899957d65a8a18d583ac8b
-size 94375562

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/all_slices_y_ensemble_yes_H5_postoperative changes.pth

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:08a77109b07ffa74a33168519113245428c193ee61a4628f8905f30f764b9da0
-size 94377182

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/ladder_discover_slices_performance_ERM.txt

@@ -1,8 +0,0 @@
-Accuracy for Pneumothorax patients with tube: 0.9043824701195219
-Accuracy for Pneumothorax patients without  tube (Worst Group): 0.6002886002886003
-Accuracy for Pneumothorax overall patients: 0.6811440677966102
-
-
-AUROC for overall (Mean): 0.8633091283585222
-AUROC for positive disease with  tube vs all negatives: 0.9523825353497848
-AUROC for positive disease without  tube vs all negatives: 0.8310473315983391

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/ladder_mitigate_slices.txt

@@ -1,8 +0,0 @@
-Accuracy for Pneumothorax patients with tube: 0.9307692307692308
-Accuracy for Pneumothorax patients without  tube (Worst Group): 0.7624309392265194
-Accuracy for Pneumothorax overall patients: 0.806910569105691
-
-
-AUROC for overall (Mean): 0.9269575299875843
-AUROC for positive disease with  tube vs all negatives: 0.9593856185883952
-AUROC for positive disease without  tube vs all negatives: 0.9153120838049725

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/ladder_validate_slices_w_LLM-pneumothorax.txt

@@ -1,30 +0,0 @@
-Hypothesis Dictionary:
-{'H1': 'The classifier is making mistakes as it is biased toward the presence of chest tubes.', 'H2': 'The classifier is making mistakes as it is biased toward the presence of fluid in the pneumothorax (hydropneumothorax).', 'H3': 'The classifier is making mistakes as it is biased toward the size and location of the pneumothorax (e.g., basal, apical, loculated).', 'H4': 'The classifier is making mistakes as it is biased toward the change in pneumothorax size or fluid content over time (interval changes).', 'H5': 'The classifier is making mistakes as it is biased toward the presence of associated pleural effusion.'}
-
-Prompt Dictionary:
-{'H1_chest tubes': ['Chest X-ray showing a pneumothorax with multiple chest tubes in place.', 'Image of a pneumothorax with a chest tube, clearly visible.', 'Pneumothorax with indwelling chest tube, demonstrating successful drainage.', 'X-ray exhibiting a pneumothorax and the presence of multiple chest tubes.', 'A pneumothorax case where chest tubes are inserted for drainage.'], 'H2_fluid in pneumothorax': ['Chest X-ray showing a hydropneumothorax with significant fluid component.', 'Image depicting a pneumothorax with an air-fluid level, indicating fluid presence.', 'Pneumothorax characterized by loculated hydropneumothorax with fluid pockets.', 'X-ray showing a pneumothorax where fluid has partially or fully replaced air.', 'A hydropneumothorax case where fluid component is dominant.'], 'H3_size and location': ['Large right-sided basal pneumothorax.', 'Small apical pneumothorax in the left lung.', 'Loculated pneumothorax in the right lower lobe.', 'Extensive pneumothorax involving both lungs.', 'A small, localized pneumothorax in the right upper lobe.'], 'H4_interval changes': ['Chest X-ray showing decreased pneumothorax size compared to a previous image.', 'Image of a pneumothorax with increased fluid component since the last examination.', 'Progression of pneumothorax with increased air and fluid over time.', 'X-ray revealing a stable pneumothorax with no change in size or fluid level.', "A pneumothorax case where there's significant change in size or fluid level from interval images."], 'H5_pleural effusion': ['Pneumothorax accompanied by a large pleural effusion.', 'Image of a pneumothorax with a moderate right-sided pleural effusion.', 'Pneumothorax and pleural effusion, both requiring interventions.', 'X-ray showing a pneumothorax with associated small pleural effusion.', 'A pneumothorax case with a significant amount of pleural fluid present.']}
-==============================================
-0 H1_chest tubes
-Accuracy on the error slice (where attribute absent, the hypothesis failed): 0.3474576271186441
-Accuracy on the bias aligned slice (where attribute present, the hypothesis passed): 0.7620320855614974
-==============================================
-==============================================
-1 H2_fluid in pneumothorax
-Accuracy on the error slice (where attribute absent, the hypothesis failed): 0.26666666666666666
-Accuracy on the bias aligned slice (where attribute present, the hypothesis passed): 0.7338129496402878
-==============================================
-==============================================
-2 H3_size and location
-Accuracy on the error slice (where attribute absent, the hypothesis failed): 0.39090909090909093
-Accuracy on the bias aligned slice (where attribute present, the hypothesis passed): 0.7408376963350786
-==============================================
-==============================================
-3 H4_interval changes
-Accuracy on the error slice (where attribute absent, the hypothesis failed): 0.22535211267605634
-Accuracy on the bias aligned slice (where attribute present, the hypothesis passed): 0.7363420427553444
-==============================================
-==============================================
-4 H5_pleural effusion
-Accuracy on the error slice (where attribute absent, the hypothesis failed): 0.42990654205607476
-Accuracy on the bias aligned slice (where attribute present, the hypothesis passed): 0.7272727272727273
-==============================================

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/pneumothorax_error_top_100_sent_diff_emb.txt

@@ -1,100 +0,0 @@
-1. perhaps mild increase in hydropneumothorax but with chest tube remaining in place and no striking change
-2. in comparison with the study of ___ , there is little change in the 3 left chest tubes with area of hydro pneumothorax persisting in the lateral aspect of the upper left chest as well as probably the left lung base
-3. a moderate sized loculated hydropneumothorax demonstrates decrease in fluid component and increasing gas component , particularly in the right base
-4. small right pleural effusion has replaced the previous basal pneumothorax that developed with previous drainage of pleural effusion and placement of 2 thoracostomy tubes
-5. 2 right indwelling pleural drains are unchanged in their respective positions , and there has probably been some decrease in the volume of the right posterior air and pleural collection in the rib right lower hemi thorax
-6. interval placement of right apical and right base pleural drains with slight decrease in right hydropneumothorax
-7. other less likely possibility include expansion of known loculated hydropneumothorax ( chest tube does not appear to be draining this region )
-8. increasing fluid within the multiple pockets of the pneumothorax on the right
-9. decreased fluid and increased air in the right basilar hydropneumothorax , where the pleural catheter resides
-10. moderate right pleural effusion with loculated hydro pneumothorax components is again demonstrated , with apparent slight increase in extent of right basilar hydro pneumothorax
-11. three right - sided chest tubes remain in place with decrease in the loculated basilar hydropneumothoraces and some interval improvement in aeration at the right base
-12. loculated right hydro pneumothorax , with right basilar pneumothorax component slightly increased
-13. the only change is increasing fluid within a loculated hydropneumothorax , with corresponding decrease in air , located along the left lateral chest wall , of uncertain significance in the short - term postoperative course
-14. multiple small loculated hydropneumothoraces are again demonstrated , with interval worsening of loculated hydropneumothoraces at the left base
-15. fluid has now replaced air in the lateral component of the multi loculated left hydro pneumothorax , despite the insertion in that location of a new small drainage catheter
-16. loculated he mall / hydro pneumothorax in the upper portion of the chest as well as in the left lung base are unchanged
-17. small - to - moderate right hydropneumothorax , increase in the lateral costal fluid collection , and stable small apical air component
-18. successful placement of chest tube and pleurx tube , small right basal loculated pneumothorax replaces area of successful pleural drainage
-19. interval insertion of a right - sided chest tube in good position , right - sided hydro pneumothorax has changed with increased pleural air are and relative decrease of the pleural fluid
-20. in comparison with the study of ___ , there is little overall change in the loculated hydro pneumothorax at the right base with chest tube in place
-21. one of two right - sided pleural tubes has been removed in the interval , with no substantial change in appearance of loculated hydropneumothoraces at the right lung apex
-22. there is no appreciable interval change in the loculated right hydropneumothorax other than a slight increase in the fluid component
-23. new small right basal pneumothorax absent a fluid level , suggests that the fluid and air are loculated separately
-24. right - sided loculated hydropneumothorax has increased
-25. interval increase in right loculated hydropneumothorax
-26. right hydropneumothorax persists with now more fluid in the lateral basilar portion with air collecting at the apex
-27. persistent hydropneumothorax , however , no larger than prior , status post chest tube clamping
-28. since recent radiograph from earlier the same date , 2 chest tubes have been removed from the right hemi thorax with development of a right basilar hydropneumothorax as well as a persistent loculated fluid collection at the right apex
-29. stable , loculated , moderate right hydro pneumothorax and moderate dependent pleural effusion
-30. interval increase in the loculated left basal pneumothorax
-31. slight interval increase in known right basilar hydropneumothorax following chest tube clamping
-32. of the placing the left chest tube on water seal , there is a minimal increase in extent of the left postoperative predominantly basal pneumothorax
-33. impression : probable slight increase in right - sided loculated pneumothorax .
-34. two right chest tubes remain in place , with persistent moderate right pneumothorax , including apical pneumothorax component and basilar hydropneumothorax component
-35. 3 chest tubes remain in place and there is again an area of hydro pneumothorax in the lateral aspect of the upper left chest as well as probably at the left base
-36. the known pneumothorax , partially filled with fluid , is unchanged
-37. grossly stable examination with possible slight decrease in size of right apical air cavity , mildly increased right basilar atelectasis , and possible very slight increase in right pleural effusion
-38. loculated right pleural effusion is unchanged as well as there is no change in apical in basal areas of loculated pneumothorax
-39. interval slight repositioning of right - sided chest tube , but similar appearance of loculated right basilar pneumothorax and overall no relevant changes in the appearance of the chest and abdomen since the recent study of less than 30 minutes earlier .
-40. left fluidopneumothorax with stable small pneumothorax and moderate interval increase in fluid
-41. the patient is status post decortication with a slight interval increase in moderate right - sided pneumothorax
-42. as compared to the prior radiograph from several hr earlier , 2 right - sided chest tubes have been removed with increasing number and size of small loculated hydro pneumothoraces in the right hemi thorax as well as development of air - filled tracks at pre - existing chest tube sites
-43. slightly increased fluid within a loculated right hydropneumothorax
-44. slightly increased loculated right basilar hydropneumothorax
-45. there is unchanged evidence of a small basal and lateral pleural air inclusion at the site of tube insertion
-46. configuration of right basilar hydropneumothorax component is slightly different , with apparent slight increase in amount of pleural fluid and probably decreased in extent of pleural gas in this region
-47. however there is a air - fluid level on the right suggesting a loculated hydro pneumothorax on the left there is some minimal improved aeration of the left lower lobe but there continues to be volume loss and pleural effusion and an apical pneumothorax
-48. minimal increase in the right - sided loculated hydro pneumothorax
-49. moderate loculated right hydropneumothorax , probably similar
-50. right - sided hydropneumothorax with interval increase in the amount of pleural air , with stable small layering effusion
-51. since the recent study of several hr earlier , 2 right - sided chest tubes remain in place , with persistent small to moderate right pleural effusion with apparent loculated basilar pneumothorax at chest tube site
-52. since prior , there has been minimal increase in the fluid component and minimal decrease in the air component of a right basilar hydropneumothorax
-53. unchanged right basal hydropneumothorax with chest tube to water seal
-54. multi loculated left hydropneumothorax , including a large fissural fluid component is unchanged since ___ following insertion of the second small caliber pleural drainage catheter
-55. at the right lung base , multiple loculated air - fluid levels are seen consistent with hydropneumothorax
-56. interval slight withdrawal of the left chest tube , otherwise unchanged appearance of the chest including a small to moderate left effusion and an air - fluid level projecting over the left mid lung consistent with the left hilar pneumothorax as seen on recent chest ct
-57. hydropneumothorax is again seen with fluid level rising , an expected postoperative evolution
-58. persistent right apical pneumothorax and loculated hydro pneumothoraces
-59. in comparison with the study of ___ , there is been a a right middle lobectomy with 2 chest tubes in place and substantial pneumothorax
-60. the small apical component of right pneumothorax is unchanged , but there has been an increase in fluid and air loculations in the right lower chest
-61. in comparison with the study of ___ , there again is evidence of previous right upper lobectomy with two chest tubes in place and persistent pneumothorax
-62. the extent of the post - surgical right pneumothorax and the location of the two right chest tubes is constant
-63. there has been slight increase in the loculated pneumothorax at the right base since the previous study
-64. ap chest compared to ___ through ___ , 4 : 45 p . m .: moderate - to - large right pneumothorax improved between ___ and ___ and has been stable all day , despite presence of two right pleural tubes ending in the upper hemithorax
-65. smaller loculated hydropneumothorax , which is filling with fluid
-66. small right pleural effusion has increased and pneumothorax persists despite presence of a right pleural tube which could be fissural
-67. extensive surgical changes are observed in the right lung with surgical sutures and three chest tubes , one apically and two basilary located
-68. the loculated hydropneumothorax is smaller and filling with fluid
-69. minimal increase in the fluid component and minimal decrease in the air component of a right hydropneumothorax with overall , little interval change
-70. pa and lateral chest compared to ___ through ___ at 9 : 15 a . m .: previous small left pneumothorax with apical and anterior air collections and a dependent air and fluid collection has changed slightly in distribution but not in overall volume , with the left apical pleural tube still in place
-71. slight increase in pleural fluid , unchanged basal pleural air on the right
-72. hydropneumothorax on the left is again seen , with increased fluid component , though air component is unchanged
-73. interval decrease in the amount of fluid but increase in the amount of air within the right pleura compatible with a small hydropneumothorax
-74. moderate right apical and loculated right basilar hydropneumothorax components appear unchanged allowing for differences in patient positioning between the studies
-75. this finding explains presence of a small loculated pneumothorax with air - fluid level in this area
-76. complex loculated hydro pneumothorax in the lower right hemi thorax is remarkable for decreased fluid component and increased relative proportion of gas
-77. the hydro pneumothorax on the right appears to be larger despite the chest tube in place
-78. two chest tubes remain in place in the right hemithorax with a persistent moderate to large right pneumothorax with apical pneumothorax component and basilar hydropneumothorax
-79. a moderate right - sided hydro pneumothorax is largely stable from ___ despite the presence of a chest tube
-80. pleurx catheter remains in place , with persistent moderate - sized loculated right basilar hydropneumothorax
-81. moderate left basilar pneumothorax status post pleurx tube placement with no signs of tension
-82. minimal increase in extent of the known right - sided pneumothorax with a pleural basally located fluid collection
-83. persistent moderate right basilar pneumothorax after pleurx catheter placement
-84. chest tube remains in place with persistent loculated small hydropneumothoraces at the right lung base , accompanied by slight increase in size of a small right pleural effusion
-85. small left pleural effusion , predominantly lateral , unchanged , moderately severe left lower lobe atelectasis , unchanged , apical and basal pleural tubes in place
-86. right lateral loculated pneumothorax and air - fluid levels at the right lung base are essentially unchanged
-87. this could lead to accumulation of air or fluid in the right chest wall though there is no appreciable reduction of air currently
-88. slight interval increase in moderate , loculated left basal hydropneumothorax despite indwelling pigtail drain
-89. interval decrease in pneumothorax , with replacement by a loculated pleural effusion
-90. basilar hydropneumothorax shows less gas and slightly more pleural fluid
-91. as compared to ___ radiograph , a loculated right basilar hydro pneumothorax appear similar , with tube in place
-92. increased pneumothorax on the right , unchanged the lateral consolidation hyperinflation of the left lung as compared to previous exam chest tubes are unchanged in position
-93. in comparison with the study of ___ , there is little overall change in the loculated air collection at the right base is well as probable free and loculated effusion
-94. on the left , there is a small hydropneumothorax with increased fluid content , and small residual pneumothorax component , the latter apparently not increased
-95. no significant change with the right loculated hydropneumothorax
-96. in comparison with study of ___ , there has been placement of a right chest tube and pleurx tube with some residual pleural effusion
-97. large loculated right basal pneumothorax is unchanged
-98. as compared to ___ chest radiograph , 3 chest tubes remain in place in the right hemi thorax with apparent interval increase in moderate size loculated right pleural effusion with associated multiple loculated hydro pneumothorax components
-99. there are 2 chest tubes in place on the left with persistent , largely stable hydro pneumothorax along the lateral aspect of the left chest
-100. status post removal of one of two left chest tubes with loculated left pleural effusion and loculated hydropneumothoraces as described

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/pneumothorax_hypothesis_dict.pkl

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:6d525a66a7c18af8dad6a1f87a7990898bc2f44a0d0c09862e73e96b12bf79b1
-size 628

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/pneumothorax_prompt_dict.pkl

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:f7ebc7f4c453cb4e95602a3efc5c8b879a52961b673a7bc23f28863ec7e3f58c
-size 1882

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/prompt.txt

@@ -1,141 +0,0 @@
-
-    Context: Pneumothorax classification from chest-x-rays using a deep neural network
-    Analysis post training: On a validation set, 
-    a. Get the difference between the image embeddings of correct and incorrectly classified samples to estimate the features present in the correctly classified samples but missing in the misclassified samples.
-    b. Retrive the top 50 sentences from radiology report that matches closely to the embedding difference in step a.
-    c. The sentence list is given below:
-    1. perhaps mild increase in hydropneumothorax but with chest tube remaining in place and no striking change
-2. in comparison with the study of ___ , there is little change in the 3 left chest tubes with area of hydro pneumothorax persisting in the lateral aspect of the upper left chest as well as probably the left lung base
-3. a moderate sized loculated hydropneumothorax demonstrates decrease in fluid component and increasing gas component , particularly in the right base
-4. small right pleural effusion has replaced the previous basal pneumothorax that developed with previous drainage of pleural effusion and placement of 2 thoracostomy tubes
-5. 2 right indwelling pleural drains are unchanged in their respective positions , and there has probably been some decrease in the volume of the right posterior air and pleural collection in the rib right lower hemi thorax
-6. interval placement of right apical and right base pleural drains with slight decrease in right hydropneumothorax
-7. other less likely possibility include expansion of known loculated hydropneumothorax ( chest tube does not appear to be draining this region )
-8. increasing fluid within the multiple pockets of the pneumothorax on the right
-9. decreased fluid and increased air in the right basilar hydropneumothorax , where the pleural catheter resides
-10. moderate right pleural effusion with loculated hydro pneumothorax components is again demonstrated , with apparent slight increase in extent of right basilar hydro pneumothorax
-11. three right - sided chest tubes remain in place with decrease in the loculated basilar hydropneumothoraces and some interval improvement in aeration at the right base
-12. loculated right hydro pneumothorax , with right basilar pneumothorax component slightly increased
-13. the only change is increasing fluid within a loculated hydropneumothorax , with corresponding decrease in air , located along the left lateral chest wall , of uncertain significance in the short - term postoperative course
-14. multiple small loculated hydropneumothoraces are again demonstrated , with interval worsening of loculated hydropneumothoraces at the left base
-15. fluid has now replaced air in the lateral component of the multi loculated left hydro pneumothorax , despite the insertion in that location of a new small drainage catheter
-16. loculated he mall / hydro pneumothorax in the upper portion of the chest as well as in the left lung base are unchanged
-17. small - to - moderate right hydropneumothorax , increase in the lateral costal fluid collection , and stable small apical air component
-18. successful placement of chest tube and pleurx tube , small right basal loculated pneumothorax replaces area of successful pleural drainage
-19. interval insertion of a right - sided chest tube in good position , right - sided hydro pneumothorax has changed with increased pleural air are and relative decrease of the pleural fluid
-20. in comparison with the study of ___ , there is little overall change in the loculated hydro pneumothorax at the right base with chest tube in place
-21. one of two right - sided pleural tubes has been removed in the interval , with no substantial change in appearance of loculated hydropneumothoraces at the right lung apex
-22. there is no appreciable interval change in the loculated right hydropneumothorax other than a slight increase in the fluid component
-23. new small right basal pneumothorax absent a fluid level , suggests that the fluid and air are loculated separately
-24. right - sided loculated hydropneumothorax has increased
-25. interval increase in right loculated hydropneumothorax
-26. right hydropneumothorax persists with now more fluid in the lateral basilar portion with air collecting at the apex
-27. persistent hydropneumothorax , however , no larger than prior , status post chest tube clamping
-28. since recent radiograph from earlier the same date , 2 chest tubes have been removed from the right hemi thorax with development of a right basilar hydropneumothorax as well as a persistent loculated fluid collection at the right apex
-29. stable , loculated , moderate right hydro pneumothorax and moderate dependent pleural effusion
-30. interval increase in the loculated left basal pneumothorax
-31. slight interval increase in known right basilar hydropneumothorax following chest tube clamping
-32. of the placing the left chest tube on water seal , there is a minimal increase in extent of the left postoperative predominantly basal pneumothorax
-33. impression : probable slight increase in right - sided loculated pneumothorax .
-34. two right chest tubes remain in place , with persistent moderate right pneumothorax , including apical pneumothorax component and basilar hydropneumothorax component
-35. 3 chest tubes remain in place and there is again an area of hydro pneumothorax in the lateral aspect of the upper left chest as well as probably at the left base
-36. the known pneumothorax , partially filled with fluid , is unchanged
-37. grossly stable examination with possible slight decrease in size of right apical air cavity , mildly increased right basilar atelectasis , and possible very slight increase in right pleural effusion
-38. loculated right pleural effusion is unchanged as well as there is no change in apical in basal areas of loculated pneumothorax
-39. interval slight repositioning of right - sided chest tube , but similar appearance of loculated right basilar pneumothorax and overall no relevant changes in the appearance of the chest and abdomen since the recent study of less than 30 minutes earlier .
-40. left fluidopneumothorax with stable small pneumothorax and moderate interval increase in fluid
-41. the patient is status post decortication with a slight interval increase in moderate right - sided pneumothorax
-42. as compared to the prior radiograph from several hr earlier , 2 right - sided chest tubes have been removed with increasing number and size of small loculated hydro pneumothoraces in the right hemi thorax as well as development of air - filled tracks at pre - existing chest tube sites
-43. slightly increased fluid within a loculated right hydropneumothorax
-44. slightly increased loculated right basilar hydropneumothorax
-45. there is unchanged evidence of a small basal and lateral pleural air inclusion at the site of tube insertion
-46. configuration of right basilar hydropneumothorax component is slightly different , with apparent slight increase in amount of pleural fluid and probably decreased in extent of pleural gas in this region
-47. however there is a air - fluid level on the right suggesting a loculated hydro pneumothorax on the left there is some minimal improved aeration of the left lower lobe but there continues to be volume loss and pleural effusion and an apical pneumothorax
-48. minimal increase in the right - sided loculated hydro pneumothorax
-49. moderate loculated right hydropneumothorax , probably similar
-50. right - sided hydropneumothorax with interval increase in the amount of pleural air , with stable small layering effusion
-51. since the recent study of several hr earlier , 2 right - sided chest tubes remain in place , with persistent small to moderate right pleural effusion with apparent loculated basilar pneumothorax at chest tube site
-52. since prior , there has been minimal increase in the fluid component and minimal decrease in the air component of a right basilar hydropneumothorax
-53. unchanged right basal hydropneumothorax with chest tube to water seal
-54. multi loculated left hydropneumothorax , including a large fissural fluid component is unchanged since ___ following insertion of the second small caliber pleural drainage catheter
-55. at the right lung base , multiple loculated air - fluid levels are seen consistent with hydropneumothorax
-56. interval slight withdrawal of the left chest tube , otherwise unchanged appearance of the chest including a small to moderate left effusion and an air - fluid level projecting over the left mid lung consistent with the left hilar pneumothorax as seen on recent chest ct
-57. hydropneumothorax is again seen with fluid level rising , an expected postoperative evolution
-58. persistent right apical pneumothorax and loculated hydro pneumothoraces
-59. in comparison with the study of ___ , there is been a a right middle lobectomy with 2 chest tubes in place and substantial pneumothorax
-60. the small apical component of right pneumothorax is unchanged , but there has been an increase in fluid and air loculations in the right lower chest
-61. in comparison with the study of ___ , there again is evidence of previous right upper lobectomy with two chest tubes in place and persistent pneumothorax
-62. the extent of the post - surgical right pneumothorax and the location of the two right chest tubes is constant
-63. there has been slight increase in the loculated pneumothorax at the right base since the previous study
-64. ap chest compared to ___ through ___ , 4 : 45 p . m .: moderate - to - large right pneumothorax improved between ___ and ___ and has been stable all day , despite presence of two right pleural tubes ending in the upper hemithorax
-65. smaller loculated hydropneumothorax , which is filling with fluid
-66. small right pleural effusion has increased and pneumothorax persists despite presence of a right pleural tube which could be fissural
-67. extensive surgical changes are observed in the right lung with surgical sutures and three chest tubes , one apically and two basilary located
-68. the loculated hydropneumothorax is smaller and filling with fluid
-69. minimal increase in the fluid component and minimal decrease in the air component of a right hydropneumothorax with overall , little interval change
-70. pa and lateral chest compared to ___ through ___ at 9 : 15 a . m .: previous small left pneumothorax with apical and anterior air collections and a dependent air and fluid collection has changed slightly in distribution but not in overall volume , with the left apical pleural tube still in place
-71. slight increase in pleural fluid , unchanged basal pleural air on the right
-72. hydropneumothorax on the left is again seen , with increased fluid component , though air component is unchanged
-73. interval decrease in the amount of fluid but increase in the amount of air within the right pleura compatible with a small hydropneumothorax
-74. moderate right apical and loculated right basilar hydropneumothorax components appear unchanged allowing for differences in patient positioning between the studies
-75. this finding explains presence of a small loculated pneumothorax with air - fluid level in this area
-76. complex loculated hydro pneumothorax in the lower right hemi thorax is remarkable for decreased fluid component and increased relative proportion of gas
-77. the hydro pneumothorax on the right appears to be larger despite the chest tube in place
-78. two chest tubes remain in place in the right hemithorax with a persistent moderate to large right pneumothorax with apical pneumothorax component and basilar hydropneumothorax
-79. a moderate right - sided hydro pneumothorax is largely stable from ___ despite the presence of a chest tube
-80. pleurx catheter remains in place , with persistent moderate - sized loculated right basilar hydropneumothorax
-81. moderate left basilar pneumothorax status post pleurx tube placement with no signs of tension
-82. minimal increase in extent of the known right - sided pneumothorax with a pleural basally located fluid collection
-83. persistent moderate right basilar pneumothorax after pleurx catheter placement
-84. chest tube remains in place with persistent loculated small hydropneumothoraces at the right lung base , accompanied by slight increase in size of a small right pleural effusion
-85. small left pleural effusion , predominantly lateral , unchanged , moderately severe left lower lobe atelectasis , unchanged , apical and basal pleural tubes in place
-86. right lateral loculated pneumothorax and air - fluid levels at the right lung base are essentially unchanged
-87. this could lead to accumulation of air or fluid in the right chest wall though there is no appreciable reduction of air currently
-88. slight interval increase in moderate , loculated left basal hydropneumothorax despite indwelling pigtail drain
-89. interval decrease in pneumothorax , with replacement by a loculated pleural effusion
-90. basilar hydropneumothorax shows less gas and slightly more pleural fluid
-91. as compared to ___ radiograph , a loculated right basilar hydro pneumothorax appear similar , with tube in place
-92. increased pneumothorax on the right , unchanged the lateral consolidation hyperinflation of the left lung as compared to previous exam chest tubes are unchanged in position
-93. in comparison with the study of ___ , there is little overall change in the loculated air collection at the right base is well as probable free and loculated effusion
-94. on the left , there is a small hydropneumothorax with increased fluid content , and small residual pneumothorax component , the latter apparently not increased
-95. no significant change with the right loculated hydropneumothorax
-96. in comparison with study of ___ , there has been placement of a right chest tube and pleurx tube with some residual pleural effusion
-97. large loculated right basal pneumothorax is unchanged
-98. as compared to ___ chest radiograph , 3 chest tubes remain in place in the right hemi thorax with apparent interval increase in moderate size loculated right pleural effusion with associated multiple loculated hydro pneumothorax components
-99. there are 2 chest tubes in place on the left with persistent , largely stable hydro pneumothorax along the lateral aspect of the left chest
-100. status post removal of one of two left chest tubes with loculated left pleural effusion and loculated hydropneumothoraces as described
-
-    
-    Task: 
-    Ignore '___' as they are due to anonymization.
-    Consider the consistent attributes present in the descriptions of correctly classified and misclassified samples regarding the positive Pneumothorax patients. Formulate hypotheses based on these attributes. Attributes are all the concepts (e.g, explicit or implicit anatomies, observations, or any concept leading to potential bias) in the sentences other than the class label (Pneumothorax in this case). Assess how these characteristics might be influencing the classifier's performance. Your response should contain only the list of top hypothesis, nothing else. For the response, you should be the following python dictionary template, no extra sentence:
-    
-        hypothesis_dict = {
-        "H1": "The classifier is making mistake  as it is biased toward <attribute>",
-        "H2": "The classifier is making mistake as it is biased toward <attribute>",
-        "H3": "The classifier is making mistake as it is biased toward <attribute>",
-        ...
-        }
-    
-    
-    To effectively test Hypothesis 1 (H1) using the CLIP language encoder, you need to create prompts that explicitly validate H1. These prompts will help to generate text embeddings that capture the essence of the hypothesis, which can be used to compute similarity with the image embeddings from the dataset. The goal is to see if the images where the model makes mistakes are those that aligns with H1 or violates H1. The prompts are python list. Remember, your focus is only the class label "Pneumothorax" (i.e, positive Pneumothorax cases)
-    
-    Do this for all the hypothesis. Your final response should follow the following list of dictionaries, nothing else:
-    
-    
-    prompt_dict = {
-        "H1_<attribute>": [List of prompts],
-        "H2_<attribute>": [List of prompts]
-        ...
-    }
-
-    
-    
-    Each attribute hypothesis should contain 5 prompts.
-    
-    So final response should follow the below format strictly (nothing else, no extra sentence): 
-    ```python
-        hypothesis_dict 
-        prompt_dict 
-    ```
-    

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/sent_emb_word.npy

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:b67644ab965c4d16f20fc0998587ad06c75d5ac0fbcd955ca5a3f6f3071a20ce
-size 1221185664

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/sentences.pkl

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:f650f3f9e11c0d2af0305f7f13c1eec7d31e3804a92d90433f209a8a40056e86
-size 54575999

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/sentences_w_tube_dict.pkl

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:7602abfa0c8e464737c049477f523a776590690d180ba15a85ef60f137e6f867
-size 4863494

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/test_additional_info.pkl

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:eb00c86caeb4deaf91426b0d0488232caff6345576908f13c02367ae9a81ec9b
-size 1251769

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/test_classifier_embeddings.npy

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:e88ae142b5f7a13211c895f65789f10854981899ce81f48f359c1442d9f52210
-size 81920128

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/test_clip_embeddings.npy

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:acc27cbb81062b27e0ef9b78ea6bd7c9ded77b720ef7d1b47cc95e8e548364ad
-size 20480128

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/train_additional_info.csv

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:385275a22cbd23f9da4a504a14042a420435e59e90e8fa75db617acc0363a7c0
-size 10731240

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/train_additional_info.pkl

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:d495f97949762c5f5d5681ae5352abe6ee17bb1a60759b196708c9c3a94457ee
-size 10270143

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/train_classifier_embeddings.npy

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:67dad02f4ab4c8c87230c5e582dc9721417145bf02b4ee846a67c3e401e670a6
-size 672727168

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/train_clip_embeddings.npy

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:884ff829768e2c29c23819b695b42508886a212353baf99d20950d3473f92c18
-size 168181888

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/train_pneumothorax_dataframe_mitigation.csv

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:3bb458ea0d11da56209ddcce274504d8e94ab984c6976c55d96846839ee5a371
-size 16380851

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/valid_additional_info.pkl

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:a92f4bb34858aa5221c37462424f001bcbbfac6e0079414f246a61693fded014
-size 2502254

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/valid_classifier_embeddings.npy

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:fa0504d25d0054bd85535b19f42428901f390bf3984d13eda2ccd56c809bc46a
-size 163840128

NIH/resnet50/seed0/clip_img_encoder_swin-tiny-cxr-clip_mc/valid_clip_embeddings.npy

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:6138fe171b5e34f7ed9c67ece66682ea60e2e4dea325bbb0590631b35d717813
-size 40960128

NIH/resnet50/seed0/mimic-cxr-chexpert.csv

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:80605c09537d48bae31c7fbcd808f87e7b49bd0f4d2c1b4fbd0ee6777863db85
-size 257092002

NIH/resnet50/seed0/swint_mc.tar

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:19ad633804daa3fd6d48d26a93d3731356eed8dfc836102b95d1c5965c144608
-size 1635492981