Instructions to use sid512206/CardioNet-XL with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Keras
How to use sid512206/CardioNet-XL with Keras:
# Available backend options are: "jax", "torch", "tensorflow". import os os.environ["KERAS_BACKEND"] = "jax" import keras model = keras.saving.load_model("hf://sid512206/CardioNet-XL") - Notebooks
- Google Colab
- Kaggle
Update Readme.md
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| 1 |
+
# CardioNet-XL π«
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| 2 |
+
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| 3 |
+
[](https://huggingface.co/sid512206/CardioNet-XL)
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| 4 |
+
[](https://www.tensorflow.org/)
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| 5 |
+
[](https://physionet.org/content/ptb-xl/)
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+
[](LICENSE)
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| 7 |
+
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+
**CardioNet-XL** is a specialized 1D Convolutional Neural Network (CNN) designed for multi-label classification of cardiac abnormalities from ECG signal data. Trained on the **PTB-XL dataset**, the model is optimized to detect five specific classes, providing a high-precision screening tool for clinical decision support.
|
| 9 |
+
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| 10 |
+
---
|
| 11 |
+
|
| 12 |
+
## π Table of Contents
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| 13 |
+
|
| 14 |
+
- [Features](#-features)
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| 15 |
+
- [Dataset](#-dataset)
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| 16 |
+
- [Model Architecture](#-model-architecture)
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| 17 |
+
- [Performance Metrics](#-performance-metrics)
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| 18 |
+
- [Installation](#-installation)
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| 19 |
+
- [Quick Start](#-quick-start)
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| 20 |
+
- [Training Details](#-training-details)
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| 21 |
+
- [Clinical Applications](#-clinical-applications)
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| 22 |
+
- [Citation](#-citation)
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| 23 |
+
- [License](#-license)
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| 24 |
+
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| 25 |
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---
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| 26 |
+
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| 27 |
+
## β¨ Features
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| 28 |
+
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+
- **Multi-label Classification**: Simultaneously detects 5 cardiac abnormalities
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| 30 |
+
- **Optimized Thresholds**: Class-specific decision boundaries for clinical use
|
| 31 |
+
- **High Specificity**: Excellent performance on ST/T Change (AUC: 0.918) and Normal rhythm (AUC: 0.915)
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| 32 |
+
- **Lightweight Architecture**: 4.1M parameters, suitable for edge deployment
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| 33 |
+
- **Clinical Ready**: Designed with medical decision support in mind
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| 34 |
+
- **Trained on Large-Scale Data**: Leverages the comprehensive PTB-XL dataset
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| 35 |
+
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| 36 |
+
---
|
| 37 |
+
|
| 38 |
+
## π Dataset
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| 39 |
+
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| 40 |
+
### PTB-XL: Large Publicly Available Electrocardiography Dataset
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| 41 |
+
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| 42 |
+
CardioNet-XL is trained on the **PTB-XL database**, one of the largest publicly available ECG datasets for machine learning applications.
|
| 43 |
+
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| 44 |
+
#### Dataset Characteristics
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| 45 |
+
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| 46 |
+
- **Size**: 21,837 clinical 12-lead ECG records
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| 47 |
+
- **Duration**: 10 seconds per record
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| 48 |
+
- **Sampling Rates**: 100 Hz and 500 Hz available
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| 49 |
+
- **Patients**: 18,885 unique patients
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| 50 |
+
- **Annotations**: Expert-validated diagnostic labels
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| 51 |
+
- **Source**: Physikalisch-Technische Bundesanstalt (PTB), Germany
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| 52 |
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- **Time Period**: October 1989 to June 1996
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| 53 |
+
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| 54 |
+
#### Clinical Labels
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| 55 |
+
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| 56 |
+
The dataset includes comprehensive annotations for:
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| 57 |
+
- **Diagnostic Classes**: Normal ECG, Myocardial Infarction, ST/T Changes, Conduction Disturbances, Hypertrophy, and more
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| 58 |
+
- **Form Annotations**: Detailed morphological descriptions
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| 59 |
+
- **Rhythm Annotations**: Heart rhythm classifications
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| 60 |
+
- **Demographics**: Age, sex, and clinical metadata
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| 61 |
+
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| 62 |
+
#### Access the Dataset
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| 63 |
+
```bash
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| 64 |
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# Download from PhysioNet
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| 65 |
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wget -r -N -c -np https://physionet.org/files/ptb-xl/1.0.3/
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| 66 |
+
```
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| 67 |
+
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+
**Citation for PTB-XL Dataset**:
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+
```bibtex
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| 70 |
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@article{wagner2020ptbxl,
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| 71 |
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title={PTB-XL, a large publicly available electrocardiography dataset},
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| 72 |
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author={Wagner, Patrick and Strodthoff, Nils and Bousseljot, Ralf-Dieter and Kreiseler, Dieter and Lunze, Fatima I and Samek, Wojciech and Schaeffter, Tobias},
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| 73 |
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journal={Scientific Data},
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| 74 |
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volume={7},
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number={1},
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| 76 |
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pages={154},
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| 77 |
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year={2020},
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| 78 |
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publisher={Nature Publishing Group}
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| 79 |
+
}
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| 80 |
+
```
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| 81 |
+
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| 82 |
+
**Dataset Link**: [PTB-XL on PhysioNet](https://physionet.org/content/ptb-xl/)
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| 83 |
+
|
| 84 |
+
---
|
| 85 |
+
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| 86 |
+
## ποΈ Model Architecture
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| 87 |
+
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| 88 |
+
CardioNet-XL utilizes a deep 1D-CNN architecture with **4.1M trainable parameters**. The model processes raw ECG signals through three convolutional blocks followed by a dense classification head.
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| 89 |
+
|
| 90 |
+
### Architecture Overview
|
| 91 |
+
|
| 92 |
+
| Layer Type | Output Shape | Parameters |
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| 93 |
+
|------------|--------------|------------|
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| 94 |
+
| **Conv1D Block 1** (32 filters) | (None, 1000, 32) | 2,720 |
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| 95 |
+
| BatchNormalization | (None, 1000, 32) | 128 |
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| 96 |
+
| MaxPooling1D | (None, 500, 32) | 0 |
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| 97 |
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| **Conv1D Block 2** (64 filters) | (None, 500, 64) | 10,304 |
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| BatchNormalization | (None, 500, 64) | 256 |
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| MaxPooling1D | (None, 250, 64) | 0 |
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| **Conv1D Block 3** (128 filters) | (None, 250, 128) | 24,704 |
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| BatchNormalization | (None, 250, 128) | 512 |
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| 102 |
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| MaxPooling1D | (None, 125, 128) | 0 |
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| 103 |
+
| Flatten | (None, 16000) | 0 |
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| 104 |
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| **Dense** (256 units) | (None, 256) | 4,096,256 |
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| Dropout (0.5) | (None, 256) | 0 |
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+
| **Output Dense** (5 units) | (None, 5) | 1,285 |
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+
|
| 108 |
+
**Total Trainable Parameters**: 4,135,717 (15.78 MB)
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| 109 |
+
|
| 110 |
+
---
|
| 111 |
+
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| 112 |
+
## π Performance Metrics
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| 113 |
+
|
| 114 |
+
### Classification Report
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| 115 |
+
|
| 116 |
+
The model demonstrates strong discriminative performance across major cardiac conditions:
|
| 117 |
+
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+
| Class | Precision | Recall | F1-Score | Support |
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| 119 |
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|-------|-----------|--------|----------|---------|
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| 120 |
+
| **NORM** (Normal) | 0.86 | 0.70 | 0.77 | 963 |
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+
| **MI** (Myocardial Infarction) | 0.86 | 0.26 | 0.39 | 550 |
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| 122 |
+
| **STTC** (ST/T Change) | 0.87 | 0.38 | 0.53 | 506 |
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| 123 |
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| **CD** (Conduction Disturbance) | 0.93 | 0.35 | 0.51 | 496 |
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+
| **HYP** (Hypertrophy) | 1.00 | 0.01 | 0.02 | 262 |
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+
| **Micro Average** | 0.87 | 0.43 | 0.57 | 2777 |
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+
| **Macro Average** | 0.90 | 0.34 | 0.44 | 2777 |
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+
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+
### Optimal Decision Thresholds
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| 129 |
+
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| 130 |
+
Class-specific thresholds optimized for clinical sensitivity-specificity balance:
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+
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- **NORM**: 0.17
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| 133 |
+
- **MI**: 0.34
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+
- **STTC**: 0.43
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+
- **CD**: 0.41
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| 136 |
+
- **HYP**: 0.33
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| 137 |
+
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| 138 |
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### ROC-AUC Scores
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| 139 |
+
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| 140 |
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- **STTC**: 0.918
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| 141 |
+
- **NORM**: 0.915
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| 142 |
+
- **MI**: Strong performance
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| 143 |
+
- **CD**: Strong performance
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| 144 |
+
|
| 145 |
+
---
|
| 146 |
+
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| 147 |
+
## π§ Installation
|
| 148 |
+
|
| 149 |
+
### Prerequisites
|
| 150 |
+
```bash
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| 151 |
+
pip install tensorflow>=2.0.0 numpy pandas scikit-learn matplotlib wfdb
|
| 152 |
+
```
|
| 153 |
+
|
| 154 |
+
### Clone Repository
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| 155 |
+
```bash
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| 156 |
+
git clone https://github.com/yourusername/CardioNet-XL.git
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| 157 |
+
cd CardioNet-XL
|
| 158 |
+
```
|
| 159 |
+
|
| 160 |
+
---
|
| 161 |
+
|
| 162 |
+
## π Quick Start
|
| 163 |
+
|
| 164 |
+
### Load Model and Predict
|
| 165 |
+
```python
|
| 166 |
+
import tensorflow as tf
|
| 167 |
+
import numpy as np
|
| 168 |
+
|
| 169 |
+
# Load the pre-trained model
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| 170 |
+
model = tf.keras.models.load_model('cardionet_xl.h5')
|
| 171 |
+
|
| 172 |
+
# Define optimal thresholds for each class
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| 173 |
+
thresholds = np.array([0.17, 0.34, 0.43, 0.41, 0.33])
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| 174 |
+
class_labels = ['NORM', 'MI', 'STTC', 'CD', 'HYP']
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| 175 |
+
|
| 176 |
+
# Load your ECG data (shape: [batch_size, 1000, channels])
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| 177 |
+
ecg_data = np.load('your_ecg_data.npy')
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| 178 |
+
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| 179 |
+
# Get model predictions
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| 180 |
+
predictions = model.predict(ecg_data)
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| 181 |
+
|
| 182 |
+
# Apply optimal thresholds
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| 183 |
+
binary_predictions = (predictions > thresholds).astype(int)
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| 184 |
+
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| 185 |
+
# Display results
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| 186 |
+
for i, sample in enumerate(binary_predictions):
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| 187 |
+
detected_conditions = [class_labels[j] for j, pred in enumerate(sample) if pred == 1]
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| 188 |
+
print(f"Sample {i}: {', '.join(detected_conditions) if detected_conditions else 'No abnormalities detected'}")
|
| 189 |
+
```
|
| 190 |
+
|
| 191 |
+
### Input Data Format
|
| 192 |
+
|
| 193 |
+
- **Shape**: `(batch_size, 1000, channels)`
|
| 194 |
+
- **Type**: Normalized ECG signal (recommend z-score normalization)
|
| 195 |
+
- **Sampling Rate**: 500 Hz (downsampled from PTB-XL)
|
| 196 |
+
- **Duration**: 2 seconds per sample
|
| 197 |
+
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| 198 |
+
### Loading PTB-XL Data
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| 199 |
+
```python
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| 200 |
+
import wfdb
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| 201 |
+
import pandas as pd
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| 202 |
+
|
| 203 |
+
# Load PTB-XL metadata
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| 204 |
+
metadata = pd.read_csv('ptb-xl/ptbxl_database.csv')
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| 205 |
+
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| 206 |
+
# Load a single record
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| 207 |
+
record = wfdb.rdsamp('ptb-xl/records500/00000/00001_hr')
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| 208 |
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ecg_signal = record[0] # ECG data
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| 209 |
+
```
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| 210 |
+
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| 211 |
+
---
|
| 212 |
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| 213 |
+
## π Training Details
|
| 214 |
+
|
| 215 |
+
### Training Configuration
|
| 216 |
+
|
| 217 |
+
- **Dataset**: PTB-XL (500 Hz sampling rate)
|
| 218 |
+
- **Train/Test Split**: Standard PTB-XL split (stratified by patient)
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| 219 |
+
- **Optimizer**: Adam
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| 220 |
+
- **Loss Function**: Binary Crossentropy
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| 221 |
+
- **Epochs**: Early stopping at Epoch 4 (optimal generalization)
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| 222 |
+
- **Batch Size**: 32
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| 223 |
+
- **Validation Split**: 20%
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| 224 |
+
- **Data Augmentation**: Optional noise injection and time shifting
|
| 225 |
+
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| 226 |
+
### Training Observations
|
| 227 |
+
|
| 228 |
+
- Consistent decrease in training loss
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| 229 |
+
- Validation loss begins to rise after Epoch 4, indicating optimal stopping point
|
| 230 |
+
- Model achieves peak performance early in training
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| 231 |
+
- Class imbalance addressed through weighted loss function
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| 232 |
+
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| 233 |
+
---
|
| 234 |
+
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| 235 |
+
## π₯ Clinical Applications
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| 236 |
+
|
| 237 |
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CardioNet-XL is designed for:
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| 238 |
+
|
| 239 |
+
- **Automated ECG Screening**: First-line triage in clinical settings
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| 240 |
+
- **Remote Monitoring**: Wearable device integration
|
| 241 |
+
- **Emergency Departments**: Rapid preliminary assessment
|
| 242 |
+
- **Telemedicine**: Remote cardiac evaluation support
|
| 243 |
+
- **Research**: Large-scale ECG analysis
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| 244 |
+
- **Education**: Teaching tool for ECG interpretation
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| 245 |
+
|
| 246 |
+
**β οΈ Important**: This model is intended for research and clinical decision *support* only. It should not replace professional medical diagnosis.
|
| 247 |
+
|
| 248 |
+
---
|
| 249 |
+
|
| 250 |
+
## π Citation
|
| 251 |
+
|
| 252 |
+
If you use CardioNet-XL in your research, please cite:
|
| 253 |
+
```bibtex
|
| 254 |
+
@software{cardionet_xl_2024,
|
| 255 |
+
title={CardioNet-XL: Multi-label ECG Classification using 1D CNNs},
|
| 256 |
+
author={Your Name},
|
| 257 |
+
year={2024},
|
| 258 |
+
url={https://huggingface.co/sid512206/CardioNet-XL}
|
| 259 |
+
}
|
| 260 |
+
|
| 261 |
+
@article{wagner2020ptbxl,
|
| 262 |
+
title={PTB-XL, a large publicly available electrocardiography dataset},
|
| 263 |
+
author={Wagner, Patrick and Strodthoff, Nils and Bousseljot, Ralf-Dieter and Kreiseler, Dieter and Lunze, Fatima I and Samek, Wojciech and Schaeffter, Tobias},
|
| 264 |
+
journal={Scientific Data},
|
| 265 |
+
volume={7},
|
| 266 |
+
number={1},
|
| 267 |
+
pages={154},
|
| 268 |
+
year={2020},
|
| 269 |
+
publisher={Nature Publishing Group}
|
| 270 |
+
}
|
| 271 |
+
```
|
| 272 |
+
|
| 273 |
+
---
|
| 274 |
+
|
| 275 |
+
## π License
|
| 276 |
+
|
| 277 |
+
This project is licensed under the MIT License - see the [LICENSE](LICENSE) file for details.
|
| 278 |
+
|
| 279 |
+
**Note**: The PTB-XL dataset is licensed under the [Creative Commons Attribution 4.0 International License](https://creativecommons.org/licenses/by/4.0/).
|
| 280 |
+
|
| 281 |
+
---
|
| 282 |
+
|
| 283 |
+
## π€ Contributing
|
| 284 |
+
|
| 285 |
+
Contributions are welcome! Please feel free to submit a Pull Request.
|
| 286 |
+
|
| 287 |
+
### Areas for Contribution
|
| 288 |
+
|
| 289 |
+
- Model architecture improvements
|
| 290 |
+
- Additional cardiac condition classifications
|
| 291 |
+
- Explainability and visualization tools
|
| 292 |
+
- Deployment scripts for clinical environments
|
| 293 |
+
- Documentation improvements
|
| 294 |
+
|
| 295 |
+
---
|
| 296 |
+
|
| 297 |
+
## π§ Contact
|
| 298 |
+
|
| 299 |
+
For questions or collaborations, please reach out via:
|
| 300 |
+
- GitHub Issues
|
| 301 |
+
- Email: [your.email@example.com]
|
| 302 |
+
|
| 303 |
+
---
|
| 304 |
+
|
| 305 |
+
## π Acknowledgments
|
| 306 |
+
|
| 307 |
+
- **Dataset**: [PTB-XL ECG Database](https://physionet.org/content/ptb-xl/) - Wagner et al., 2020
|
| 308 |
+
- **PhysioNet**: For hosting and maintaining open medical datasets
|
| 309 |
+
- **Framework**: TensorFlow/Keras
|
| 310 |
+
- **Inspiration**: Clinical need for automated ECG interpretation
|
| 311 |
+
- **Community**: All contributors and researchers advancing cardiac AI
|
| 312 |
+
|
| 313 |
+
---
|
| 314 |
+
|
| 315 |
+
## π Related Resources
|
| 316 |
+
|
| 317 |
+
- [PTB-XL Dataset Paper](https://www.nature.com/articles/s41597-020-0495-6)
|
| 318 |
+
- [PhysioNet](https://physionet.org/)
|
| 319 |
+
- [ECG Interpretation Guide](https://litfl.com/ecg-library/)
|
| 320 |
+
- [TensorFlow Documentation](https://www.tensorflow.org/)
|
| 321 |
+
|
| 322 |
+
---
|
| 323 |
+
|
| 324 |
+
**Dataset**: [PTB-XL on PhysioNet](https://physionet.org/content/ptb-xl/)
|