sihuapeng commited on
Commit
ccd1aa4
·
verified ·
1 Parent(s): 690d963

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +10 -8
README.md CHANGED
@@ -5,14 +5,7 @@ tags:
5
  # Model description
6
  **MHC-II-EpiPred** (MHC-II-EpiPred, MHC II molecular epitope prediction) is a protein language model fine-tuned from [**ESM2**](https://github.com/facebookresearch/esm) pretrained model [(***facebook/esm2_t33_650M_UR50D***)](https://huggingface.co/facebook/esm2_t33_650M_UR50D) on a T cell MHC II epitope dataset.
7
 
8
- **MHC-II-EpiPred** is a classification model for predicting the class of MHC II epitope.
9
- # Results
10
- **MHC-II-EpiPred** achieved the following results:
11
- Training Loss (mse): 0.1407
12
- Training Accuracy: 0.9898
13
- Evaluation Loss (mse): 0.0836
14
- Evaluation Accuracy: 0.9703
15
- Epochs: 324
16
 
17
  # The dataset for training **MHC-II-EpiPred**
18
  The original data was downloaded from IEDB data base at https://www.iedb.org/home_v3.php.
@@ -20,6 +13,15 @@ The full data can be downloaded at https://www.iedb.org/downloader.php?file_name
20
  This dataset comprises 543,717 T-cell epitope entries, spanning a variety of species and infections caused by diverse viruses. The epitope information included encompasses a broad range of potential sources, including data relevant to disease immunotherapy.
21
 
22
  Finally, the dataset we used to train the model contains 60,256 positive and negative samples, which is stored in https://github.com/pengsihua2023/MHC-II-EpiPred/tree/main/data.
 
 
 
 
 
 
 
 
 
23
  # Model training code at GitHub
24
  https://github.com/pengsihua2023/MHC-II-EpiPred
25
 
 
5
  # Model description
6
  **MHC-II-EpiPred** (MHC-II-EpiPred, MHC II molecular epitope prediction) is a protein language model fine-tuned from [**ESM2**](https://github.com/facebookresearch/esm) pretrained model [(***facebook/esm2_t33_650M_UR50D***)](https://huggingface.co/facebook/esm2_t33_650M_UR50D) on a T cell MHC II epitope dataset.
7
 
8
+ **MHC-II-EpiPred** is a classification model for predicting the class of MHC II epitope.
 
 
 
 
 
 
 
9
 
10
  # The dataset for training **MHC-II-EpiPred**
11
  The original data was downloaded from IEDB data base at https://www.iedb.org/home_v3.php.
 
13
  This dataset comprises 543,717 T-cell epitope entries, spanning a variety of species and infections caused by diverse viruses. The epitope information included encompasses a broad range of potential sources, including data relevant to disease immunotherapy.
14
 
15
  Finally, the dataset we used to train the model contains 60,256 positive and negative samples, which is stored in https://github.com/pengsihua2023/MHC-II-EpiPred/tree/main/data.
16
+
17
+ # Results
18
+ **MHC-II-EpiPred** achieved the following results:
19
+ Training Loss (mse): 0.1407
20
+ Training Accuracy: 0.9898
21
+ Evaluation Loss (mse): 0.0836
22
+ Evaluation Accuracy: 0.9703
23
+ Epochs: 324
24
+
25
  # Model training code at GitHub
26
  https://github.com/pengsihua2023/MHC-II-EpiPred
27