---
language:
- en
license: apache-2.0
tags:
- sentence-transformers
- sentence-similarity
- feature-extraction
- generated_from_trainer
- dataset_size:9432
- loss:MatryoshkaLoss
- loss:MultipleNegativesRankingLoss
base_model: sentence-transformers/all-MiniLM-L6-v2
widget:
- source_sentence: Atherosclerosis and coronary heart disease are examples of what
type of body system disease?
sentences:
- Diseases of the cardiovascular system are common and may be life threatening.
Examples include atherosclerosis and coronary heart disease. A healthy lifestyle
can reduce the risk of such diseases developing. This includes avoiding smoking,
getting regular physical activity, and maintaining a healthy percent of body fat.
- Osmosis Osmosis is the diffusion of water through a semipermeable membrane according
to the concentration gradient of water across the membrane. Whereas diffusion
transports material across membranes and within cells, osmosis transports only
water across a membrane and the membrane limits the diffusion of solutes in the
water. Osmosis is a special case of diffusion. Water, like other substances, moves
from an area of higher concentration to one of lower concentration. Imagine a
beaker with a semipermeable membrane, separating the two sides or halves (Figure
3.21). On both sides of the membrane, the water level is the same, but there are
different concentrations on each side of a dissolved substance, or solute, that
cannot cross the membrane. If the volume of the water is the same, but the concentrations
of solute are different, then there are also different concentrations of water,
the solvent, on either side of the membrane.
- Circadian rhythms are regular changes in biology or behavior that occur in a 24-hour
cycle. In humans, for example, blood pressure and body temperature change in a
regular way throughout each 24-hour day. Animals may eat and drink at certain
times of day as well. Humans have daily cycles of behavior, too. Most people start
to get sleepy after dark and have a hard time sleeping when it is light outside.
In many species, including humans, circadian rhythms are controlled by a tiny
structure called the biological clock . This structure is located in a gland at
the base of the brain. The biological clock sends signals to the body. The signals
cause regular changes in behavior and body processes. The amount of light entering
the eyes helps control the biological clock. The clock causes changes that repeat
every 24 hours.
- source_sentence: How does a cell's membrane keep extracellular materials from mixing
with it's internal components?
sentences:
- We know that the Universe is expanding. Astronomers have wondered if it is expanding
fast enough to escape the pull of gravity. Would the Universe just expand forever?
If it could not escape the pull of gravity, would it someday start to contract?
This means it would eventually get squeezed together in a big crunch. This is
the opposite of the Big Bang.
- Physical properties that do not depend on the amount of substance present are
called intensive properties . Intensive properties do not change with changes
of size, shape, or scale. Examples of intensive properties are as follows in the
Table below .
- CHAPTER REVIEW 3.1 The Cell Membrane The cell membrane provides a barrier around
the cell, separating its internal components from the extracellular environment.
It is composed of a phospholipid bilayer, with hydrophobic internal lipid “tails”
and hydrophilic external phosphate “heads. ” Various membrane proteins are scattered
throughout the bilayer, both inserted within it and attached to it peripherally.
The cell membrane is selectively permeable, allowing only a limited number of
materials to diffuse through its lipid bilayer. All materials that cross the membrane
do so using passive (non energy-requiring) or active (energy-requiring) transport
processes. During passive transport, materials move by simple diffusion or by
facilitated diffusion through the membrane, down their concentration gradient.
Water passes through the membrane in a diffusion process called osmosis. During
active transport, energy is expended to assist material movement across the membrane
in a direction against their concentration gradient. Active transport may take
place with the help of protein pumps or through the use of vesicles.
- source_sentence: An infection may be intracellular or extracellular, depending on
this?
sentences:
- '22.3 Magnetic Fields and Magnetic Field Lines • Magnetic fields can be pictorially
represented by magnetic field lines, the properties of which are as follows: 1.
The field is tangent to the magnetic field line. Field strength is proportional
to the line density. Field lines cannot cross. Field lines are continuous loops.'
- Figure 24.13 The lifecycle of an ascomycete is characterized by the production
of asci during the sexual phase. The haploid phase is the predominant phase of
the life cycle.
- Caffeine is an example of a psychoactive drug. It is found in coffee and many
other products (see Table below ). Caffeine is a central nervous system stimulant
. Like other stimulant drugs, it makes you feel more awake and alert. Other psychoactive
drugs include alcohol, nicotine, and marijuana. Each has a different effect on
the central nervous system. Alcohol, for example, is a depressant . It has the
opposite effects of a stimulant like caffeine.
- source_sentence: What does water treatment do to water?
sentences:
- Some solutes, such as sodium acetate, do not recrystallize easily. Suppose an
exactly saturated solution of sodium acetate is prepared at 50°C. As it cools
back to room temperature, no crystals appear in the solution, even though the
solubility of sodium acetate is lower at room temperature. A supersaturated solution
is a solution that contains more than the maximum amount of solute that is capable
of being dissolved at a given temperature. The recrystallization of the excess
dissolved solute in a supersaturated solution can be initiated by the addition
of a tiny crystal of solute, called a seed crystal. The seed crystal provides
a nucleation site on which the excess dissolved crystals can begin to grow. Recrystallization
from a supersaturated solution is typically very fast.
- Figure 23.13, the esophagus runs a mainly straight route through the mediastinum
of the thorax. To enter the abdomen, the esophagus penetrates the diaphragm through
an opening called the esophageal hiatus.
- Water treatment is a series of processes that remove unwanted substances from
water. More processes are needed to purify water for drinking than for other uses.
- source_sentence: 'There are only four possible bases that make up each dna nucleotide:
adenine, guanine, thymine, and?'
sentences:
- Metamorphism. This long word means “to change form. “ A rock undergoes metamorphism
if it is exposed to extreme heat and pressure within the crust. With metamorphism
, the rock does not melt all the way. The rock changes due to heat and pressure.
A metamorphic rock may have a new mineral composition and/or texture.
- Forest and Kim Starr (Flickr:Starr Environmental). Secondary succession occurs
when nature reclaims areas formerly occupied by life . CC BY 2.0.
- 'The only difference between each nucleotide is the identity of the base. There
are only four possible bases that make up each DNA nucleotide: adenine (A), guanine
(G), thymine (T), and cytosine (C).'
pipeline_tag: sentence-similarity
library_name: sentence-transformers
metrics:
- cosine_accuracy@1
- cosine_accuracy@3
- cosine_accuracy@5
- cosine_accuracy@10
- cosine_precision@1
- cosine_precision@3
- cosine_precision@5
- cosine_precision@10
- cosine_recall@1
- cosine_recall@3
- cosine_recall@5
- cosine_recall@10
- cosine_ndcg@10
- cosine_mrr@10
- cosine_map@100
model-index:
- name: MNLP M3 Encoder SciQA
results:
- task:
type: information-retrieval
name: Information Retrieval
dataset:
name: dim 384
type: dim_384
metrics:
- type: cosine_accuracy@1
value: 0.6015252621544328
name: Cosine Accuracy@1
- type: cosine_accuracy@3
value: 0.7959961868446139
name: Cosine Accuracy@3
- type: cosine_accuracy@5
value: 0.8531935176358436
name: Cosine Accuracy@5
- type: cosine_accuracy@10
value: 0.9199237368922784
name: Cosine Accuracy@10
- type: cosine_precision@1
value: 0.6015252621544328
name: Cosine Precision@1
- type: cosine_precision@3
value: 0.26533206228153794
name: Cosine Precision@3
- type: cosine_precision@5
value: 0.17063870352716873
name: Cosine Precision@5
- type: cosine_precision@10
value: 0.09199237368922783
name: Cosine Precision@10
- type: cosine_recall@1
value: 0.6015252621544328
name: Cosine Recall@1
- type: cosine_recall@3
value: 0.7959961868446139
name: Cosine Recall@3
- type: cosine_recall@5
value: 0.8531935176358436
name: Cosine Recall@5
- type: cosine_recall@10
value: 0.9199237368922784
name: Cosine Recall@10
- type: cosine_ndcg@10
value: 0.761241503632434
name: Cosine Ndcg@10
- type: cosine_mrr@10
value: 0.7104082497314151
name: Cosine Mrr@10
- type: cosine_map@100
value: 0.713601684515785
name: Cosine Map@100
- task:
type: information-retrieval
name: Information Retrieval
dataset:
name: dim 256
type: dim_256
metrics:
- type: cosine_accuracy@1
value: 0.5919923736892279
name: Cosine Accuracy@1
- type: cosine_accuracy@3
value: 0.7902764537654909
name: Cosine Accuracy@3
- type: cosine_accuracy@5
value: 0.8360343183984748
name: Cosine Accuracy@5
- type: cosine_accuracy@10
value: 0.9142040038131554
name: Cosine Accuracy@10
- type: cosine_precision@1
value: 0.5919923736892279
name: Cosine Precision@1
- type: cosine_precision@3
value: 0.26342548458849696
name: Cosine Precision@3
- type: cosine_precision@5
value: 0.16720686367969492
name: Cosine Precision@5
- type: cosine_precision@10
value: 0.09142040038131555
name: Cosine Precision@10
- type: cosine_recall@1
value: 0.5919923736892279
name: Cosine Recall@1
- type: cosine_recall@3
value: 0.7902764537654909
name: Cosine Recall@3
- type: cosine_recall@5
value: 0.8360343183984748
name: Cosine Recall@5
- type: cosine_recall@10
value: 0.9142040038131554
name: Cosine Recall@10
- type: cosine_ndcg@10
value: 0.7520267351833514
name: Cosine Ndcg@10
- type: cosine_mrr@10
value: 0.700305279404422
name: Cosine Mrr@10
- type: cosine_map@100
value: 0.7038093293311698
name: Cosine Map@100
- task:
type: information-retrieval
name: Information Retrieval
dataset:
name: dim 192
type: dim_192
metrics:
- type: cosine_accuracy@1
value: 0.5805529075309819
name: Cosine Accuracy@1
- type: cosine_accuracy@3
value: 0.782650142993327
name: Cosine Accuracy@3
- type: cosine_accuracy@5
value: 0.8322211630123928
name: Cosine Accuracy@5
- type: cosine_accuracy@10
value: 0.9008579599618685
name: Cosine Accuracy@10
- type: cosine_precision@1
value: 0.5805529075309819
name: Cosine Precision@1
- type: cosine_precision@3
value: 0.26088338099777564
name: Cosine Precision@3
- type: cosine_precision@5
value: 0.16644423260247856
name: Cosine Precision@5
- type: cosine_precision@10
value: 0.09008579599618685
name: Cosine Precision@10
- type: cosine_recall@1
value: 0.5805529075309819
name: Cosine Recall@1
- type: cosine_recall@3
value: 0.782650142993327
name: Cosine Recall@3
- type: cosine_recall@5
value: 0.8322211630123928
name: Cosine Recall@5
- type: cosine_recall@10
value: 0.9008579599618685
name: Cosine Recall@10
- type: cosine_ndcg@10
value: 0.7430712975035773
name: Cosine Ndcg@10
- type: cosine_mrr@10
value: 0.6923562879234952
name: Cosine Mrr@10
- type: cosine_map@100
value: 0.6964841260809953
name: Cosine Map@100
- task:
type: information-retrieval
name: Information Retrieval
dataset:
name: dim 128
type: dim_128
metrics:
- type: cosine_accuracy@1
value: 0.567206863679695
name: Cosine Accuracy@1
- type: cosine_accuracy@3
value: 0.7607244995233555
name: Cosine Accuracy@3
- type: cosine_accuracy@5
value: 0.8236415633937083
name: Cosine Accuracy@5
- type: cosine_accuracy@10
value: 0.886558627264061
name: Cosine Accuracy@10
- type: cosine_precision@1
value: 0.567206863679695
name: Cosine Precision@1
- type: cosine_precision@3
value: 0.25357483317445184
name: Cosine Precision@3
- type: cosine_precision@5
value: 0.16472831267874166
name: Cosine Precision@5
- type: cosine_precision@10
value: 0.0886558627264061
name: Cosine Precision@10
- type: cosine_recall@1
value: 0.567206863679695
name: Cosine Recall@1
- type: cosine_recall@3
value: 0.7607244995233555
name: Cosine Recall@3
- type: cosine_recall@5
value: 0.8236415633937083
name: Cosine Recall@5
- type: cosine_recall@10
value: 0.886558627264061
name: Cosine Recall@10
- type: cosine_ndcg@10
value: 0.7260517487265687
name: Cosine Ndcg@10
- type: cosine_mrr@10
value: 0.6746886679679823
name: Cosine Mrr@10
- type: cosine_map@100
value: 0.6790430112153837
name: Cosine Map@100
- task:
type: information-retrieval
name: Information Retrieval
dataset:
name: dim 96
type: dim_96
metrics:
- type: cosine_accuracy@1
value: 0.5471877979027645
name: Cosine Accuracy@1
- type: cosine_accuracy@3
value: 0.7407054337464252
name: Cosine Accuracy@3
- type: cosine_accuracy@5
value: 0.8017159199237369
name: Cosine Accuracy@5
- type: cosine_accuracy@10
value: 0.8722592945662536
name: Cosine Accuracy@10
- type: cosine_precision@1
value: 0.5471877979027645
name: Cosine Precision@1
- type: cosine_precision@3
value: 0.2469018112488084
name: Cosine Precision@3
- type: cosine_precision@5
value: 0.16034318398474737
name: Cosine Precision@5
- type: cosine_precision@10
value: 0.08722592945662536
name: Cosine Precision@10
- type: cosine_recall@1
value: 0.5471877979027645
name: Cosine Recall@1
- type: cosine_recall@3
value: 0.7407054337464252
name: Cosine Recall@3
- type: cosine_recall@5
value: 0.8017159199237369
name: Cosine Recall@5
- type: cosine_recall@10
value: 0.8722592945662536
name: Cosine Recall@10
- type: cosine_ndcg@10
value: 0.7097194683573752
name: Cosine Ndcg@10
- type: cosine_mrr@10
value: 0.6576811627097615
name: Cosine Mrr@10
- type: cosine_map@100
value: 0.6622003643008398
name: Cosine Map@100
- task:
type: information-retrieval
name: Information Retrieval
dataset:
name: dim 64
type: dim_64
metrics:
- type: cosine_accuracy@1
value: 0.5138226882745471
name: Cosine Accuracy@1
- type: cosine_accuracy@3
value: 0.7016205910390848
name: Cosine Accuracy@3
- type: cosine_accuracy@5
value: 0.7645376549094376
name: Cosine Accuracy@5
- type: cosine_accuracy@10
value: 0.8341277407054337
name: Cosine Accuracy@10
- type: cosine_precision@1
value: 0.5138226882745471
name: Cosine Precision@1
- type: cosine_precision@3
value: 0.2338735303463616
name: Cosine Precision@3
- type: cosine_precision@5
value: 0.1529075309818875
name: Cosine Precision@5
- type: cosine_precision@10
value: 0.08341277407054337
name: Cosine Precision@10
- type: cosine_recall@1
value: 0.5138226882745471
name: Cosine Recall@1
- type: cosine_recall@3
value: 0.7016205910390848
name: Cosine Recall@3
- type: cosine_recall@5
value: 0.7645376549094376
name: Cosine Recall@5
- type: cosine_recall@10
value: 0.8341277407054337
name: Cosine Recall@10
- type: cosine_ndcg@10
value: 0.6707950308444217
name: Cosine Ndcg@10
- type: cosine_mrr@10
value: 0.618670464690484
name: Cosine Mrr@10
- type: cosine_map@100
value: 0.6242158272303533
name: Cosine Map@100
---
# MNLP M3 Encoder SciQA
This is a [sentence-transformers](https://www.SBERT.net) model finetuned from [sentence-transformers/all-MiniLM-L6-v2](https://huggingface.co/sentence-transformers/all-MiniLM-L6-v2) on the json dataset. It maps sentences & paragraphs to a 384-dimensional dense vector space and can be used for semantic textual similarity, semantic search, paraphrase mining, text classification, clustering, and more.
## Model Details
### Model Description
- **Model Type:** Sentence Transformer
- **Base model:** [sentence-transformers/all-MiniLM-L6-v2](https://huggingface.co/sentence-transformers/all-MiniLM-L6-v2)
- **Maximum Sequence Length:** 256 tokens
- **Output Dimensionality:** 384 dimensions
- **Similarity Function:** Cosine Similarity
- **Training Dataset:**
- json
- **Language:** en
- **License:** apache-2.0
### Model Sources
- **Documentation:** [Sentence Transformers Documentation](https://sbert.net)
- **Repository:** [Sentence Transformers on GitHub](https://github.com/UKPLab/sentence-transformers)
- **Hugging Face:** [Sentence Transformers on Hugging Face](https://huggingface.co/models?library=sentence-transformers)
### Full Model Architecture
```
SentenceTransformer(
(0): Transformer({'max_seq_length': 256, 'do_lower_case': False}) with Transformer model: BertModel
(1): Pooling({'word_embedding_dimension': 384, 'pooling_mode_cls_token': False, 'pooling_mode_mean_tokens': True, 'pooling_mode_max_tokens': False, 'pooling_mode_mean_sqrt_len_tokens': False, 'pooling_mode_weightedmean_tokens': False, 'pooling_mode_lasttoken': False, 'include_prompt': True})
(2): Normalize()
)
```
## Usage
### Direct Usage (Sentence Transformers)
First install the Sentence Transformers library:
```bash
pip install -U sentence-transformers
```
Then you can load this model and run inference.
```python
from sentence_transformers import SentenceTransformer
# Download from the 🤗 Hub
model = SentenceTransformer("sentence_transformers_model_id")
# Run inference
sentences = [
'There are only four possible bases that make up each dna nucleotide: adenine, guanine, thymine, and?',
'The only difference between each nucleotide is the identity of the base. There are only four possible bases that make up each DNA nucleotide: adenine (A), guanine (G), thymine (T), and cytosine (C).',
'Metamorphism. This long word means “to change form. “ A rock undergoes metamorphism if it is exposed to extreme heat and pressure within the crust. With metamorphism , the rock does not melt all the way. The rock changes due to heat and pressure. A metamorphic rock may have a new mineral composition and/or texture.',
]
embeddings = model.encode(sentences)
print(embeddings.shape)
# [3, 384]
# Get the similarity scores for the embeddings
similarities = model.similarity(embeddings, embeddings)
print(similarities.shape)
# [3, 3]
```
## Evaluation
### Metrics
#### Information Retrieval
* Datasets: `dim_384`, `dim_256`, `dim_192`, `dim_128`, `dim_96` and `dim_64`
* Evaluated with [InformationRetrievalEvaluator](https://sbert.net/docs/package_reference/sentence_transformer/evaluation.html#sentence_transformers.evaluation.InformationRetrievalEvaluator)
| Metric | dim_384 | dim_256 | dim_192 | dim_128 | dim_96 | dim_64 |
|:--------------------|:-----------|:----------|:-----------|:-----------|:-----------|:-----------|
| cosine_accuracy@1 | 0.6015 | 0.592 | 0.5806 | 0.5672 | 0.5472 | 0.5138 |
| cosine_accuracy@3 | 0.796 | 0.7903 | 0.7827 | 0.7607 | 0.7407 | 0.7016 |
| cosine_accuracy@5 | 0.8532 | 0.836 | 0.8322 | 0.8236 | 0.8017 | 0.7645 |
| cosine_accuracy@10 | 0.9199 | 0.9142 | 0.9009 | 0.8866 | 0.8723 | 0.8341 |
| cosine_precision@1 | 0.6015 | 0.592 | 0.5806 | 0.5672 | 0.5472 | 0.5138 |
| cosine_precision@3 | 0.2653 | 0.2634 | 0.2609 | 0.2536 | 0.2469 | 0.2339 |
| cosine_precision@5 | 0.1706 | 0.1672 | 0.1664 | 0.1647 | 0.1603 | 0.1529 |
| cosine_precision@10 | 0.092 | 0.0914 | 0.0901 | 0.0887 | 0.0872 | 0.0834 |
| cosine_recall@1 | 0.6015 | 0.592 | 0.5806 | 0.5672 | 0.5472 | 0.5138 |
| cosine_recall@3 | 0.796 | 0.7903 | 0.7827 | 0.7607 | 0.7407 | 0.7016 |
| cosine_recall@5 | 0.8532 | 0.836 | 0.8322 | 0.8236 | 0.8017 | 0.7645 |
| cosine_recall@10 | 0.9199 | 0.9142 | 0.9009 | 0.8866 | 0.8723 | 0.8341 |
| **cosine_ndcg@10** | **0.7612** | **0.752** | **0.7431** | **0.7261** | **0.7097** | **0.6708** |
| cosine_mrr@10 | 0.7104 | 0.7003 | 0.6924 | 0.6747 | 0.6577 | 0.6187 |
| cosine_map@100 | 0.7136 | 0.7038 | 0.6965 | 0.679 | 0.6622 | 0.6242 |
## Training Details
### Training Dataset
#### json
* Dataset: json
* Size: 9,432 training samples
* Columns: anchor and positive
* Approximate statistics based on the first 1000 samples:
| | anchor | positive |
|:--------|:----------------------------------------------------------------------------------|:------------------------------------------------------------------------------------|
| type | string | string |
| details |
What is the term for atherosclerosis of arteries that supply the heart muscle? | Atherosclerosis of arteries that supply the heart muscle is called coronary heart disease . This disease may or may not have symptoms, such as chest pain. As the disease progresses, there is an increased risk of heart attack. A heart attack occurs when the blood supply to part of the heart muscle is blocked and cardiac muscle fibers die. Coronary heart disease is the leading cause of death of adults in the United States. |
| What term describes a drug that has an effect on the central nervous system? | Caffeine is an example of a psychoactive drug. It is found in coffee and many other products (see Table below ). Caffeine is a central nervous system stimulant . Like other stimulant drugs, it makes you feel more awake and alert. Other psychoactive drugs include alcohol, nicotine, and marijuana. Each has a different effect on the central nervous system. Alcohol, for example, is a depressant . It has the opposite effects of a stimulant like caffeine. |
| What scale is used to succinctly communicate the acidity or basicity of a solution? | The pH scale is used to succinctly communicate the acidity or basicity of a solution. |
* Loss: [MatryoshkaLoss](https://sbert.net/docs/package_reference/sentence_transformer/losses.html#matryoshkaloss) with these parameters:
```json
{
"loss": "MultipleNegativesRankingLoss",
"matryoshka_dims": [
384,
256,
192,
128,
96,
64
],
"matryoshka_weights": [
1,
1,
1,
1,
1,
1
],
"n_dims_per_step": -1
}
```
### Training Hyperparameters
#### Non-Default Hyperparameters
- `eval_strategy`: epoch
- `per_device_train_batch_size`: 32
- `per_device_eval_batch_size`: 16
- `gradient_accumulation_steps`: 16
- `learning_rate`: 2e-05
- `num_train_epochs`: 4
- `lr_scheduler_type`: cosine
- `warmup_ratio`: 0.1
- `bf16`: True
- `tf32`: True
- `load_best_model_at_end`: True
- `optim`: adamw_torch_fused
- `batch_sampler`: no_duplicates
#### All Hyperparameters