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update model card README.md
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README.md
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---
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license: apache-2.0
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tags:
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- generated_from_trainer
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metrics:
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- accuracy
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model-index:
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- name: BioLinkBERT-LitCovid-v1.2.3
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results: []
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---
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<!-- This model card has been generated automatically according to the information the Trainer had access to. You
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should probably proofread and complete it, then remove this comment. -->
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# BioLinkBERT-LitCovid-v1.2.3
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This model is a fine-tuned version of [michiyasunaga/BioLinkBERT-base](https://huggingface.co/michiyasunaga/BioLinkBERT-base) on an unknown dataset.
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It achieves the following results on the evaluation set:
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- Loss: 0.9691
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- F1 micro: 0.8266
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- F1 macro: 0.3107
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- F1 weighted: 0.8821
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- F1 samples: 0.8868
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- Precision micro: 0.7335
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- Precision macro: 0.2518
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- Precision weighted: 0.8347
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- Precision samples: 0.8699
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- Recall micro: 0.9468
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- Recall macro: 0.7764
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- Recall weighted: 0.9468
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- Recall samples: 0.9538
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- Roc Auc: 0.9640
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- Accuracy: 0.7104
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## Model description
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More information needed
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## Intended uses & limitations
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More information needed
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## Training and evaluation data
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More information needed
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## Training procedure
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### Training hyperparameters
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The following hyperparameters were used during training:
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- learning_rate: 2e-05
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- train_batch_size: 16
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- eval_batch_size: 16
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- seed: 42
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- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
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- lr_scheduler_type: linear
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- num_epochs: 3
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### Training results
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| Training Loss | Epoch | Step | Validation Loss | F1 micro | F1 macro | F1 weighted | F1 samples | Precision micro | Precision macro | Precision weighted | Precision samples | Recall micro | Recall macro | Recall weighted | Recall samples | Roc Auc | Accuracy |
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|:-------------:|:-----:|:----:|:---------------:|:--------:|:--------:|:-----------:|:----------:|:---------------:|:---------------:|:------------------:|:-----------------:|:------------:|:------------:|:---------------:|:--------------:|:-------:|:--------:|
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| 1.1059 | 1.0 | 2272 | 0.7606 | 0.7517 | 0.2617 | 0.8428 | 0.8566 | 0.6257 | 0.2096 | 0.7778 | 0.8302 | 0.9412 | 0.7947 | 0.9412 | 0.9501 | 0.9553 | 0.6325 |
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| 0.6408 | 2.0 | 4544 | 0.8639 | 0.8057 | 0.2965 | 0.8751 | 0.8786 | 0.7057 | 0.2399 | 0.8315 | 0.8626 | 0.9389 | 0.8070 | 0.9389 | 0.9484 | 0.9588 | 0.6961 |
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| 0.6275 | 3.0 | 6816 | 0.9691 | 0.8266 | 0.3107 | 0.8821 | 0.8868 | 0.7335 | 0.2518 | 0.8347 | 0.8699 | 0.9468 | 0.7764 | 0.9468 | 0.9538 | 0.9640 | 0.7104 |
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### Framework versions
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- Transformers 4.28.0
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- Pytorch 2.0.0
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- Datasets 2.1.0
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- Tokenizers 0.13.3
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