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Update src/mango_disease_ontology.py
Browse files- src/mango_disease_ontology.py +624 -624
src/mango_disease_ontology.py
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"""
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Mango Disease Detection Semantic Web Ontology
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Integrates OWL-RL reasoning with computer vision disease detection
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"""
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import os
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import json
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from datetime import datetime
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from typing import Dict, List, Tuple, Optional, Any
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import cv2
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import numpy as np
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# RDF and OWL libraries
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from rdflib import Graph, Namespace, Literal, URIRef, BNode
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from rdflib.namespace import RDF, RDFS, OWL, XSD
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import owlrl
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# Import our disease detection algorithm
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from app import FruitDiseaseDetector
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class MangoOntologyManager:
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"""
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Semantic Web Ontology Manager for Mango Disease Detection
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Uses OWL-RL reasoning to enhance disease detection with domain knowledge
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"""
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def __init__(self):
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# Initialize RDF graph and namespaces
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self.graph = Graph()
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# Define namespaces for our ontology
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self.MANGO = Namespace("http://spotradar.org/mango-disease#")
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self.DISEASE = Namespace("http://spotradar.org/disease#")
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self.DETECTION = Namespace("http://spotradar.org/detection#")
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self.VISUAL = Namespace("http://spotradar.org/visual#")
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self.AGRI = Namespace("http://spotradar.org/agriculture#")
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# Bind namespaces to graph
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self.graph.bind("mango", self.MANGO)
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self.graph.bind("disease", self.DISEASE)
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self.graph.bind("detection", self.DETECTION)
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self.graph.bind("visual", self.VISUAL)
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self.graph.bind("agri", self.AGRI)
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self.graph.bind("owl", OWL)
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self.graph.bind("rdfs", RDFS)
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# Initialize disease detector
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self.detector = FruitDiseaseDetector()
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# Build the ontology
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self._build_ontology()
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# Apply OWL-RL reasoning
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self._apply_reasoning()
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def _build_ontology(self):
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"""Build the complete mango disease ontology"""
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print("Building mango disease ontology...")
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# 1. Define top-level classes
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self._define_core_classes()
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# 2. Define mango disease classes
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self._define_disease_classes()
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# 3. Define visual characteristics
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self._define_visual_properties()
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# 4. Define detection properties
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self._define_detection_properties()
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# 5. Define severity levels
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self._define_severity_levels()
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# 6. Define causal relationships
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self._define_causal_relationships()
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# 7. Define temporal aspects
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self._define_temporal_aspects()
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# 8. Define economic impact
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self._define_economic_impact()
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print("Ontology structure built successfully!")
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def _define_core_classes(self):
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"""Define fundamental classes in the ontology"""
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# Core classes
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classes = [
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(self.MANGO.Fruit, "Fruit"),
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(self.MANGO.MangoFruit, "Mango Fruit"),
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(self.DISEASE.Disease, "Disease"),
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(self.DISEASE.FungalDisease, "Fungal Disease"),
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(self.DISEASE.BacterialDisease, "Bacterial Disease"),
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(self.VISUAL.VisualCharacteristic, "Visual Characteristic"),
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(self.VISUAL.ColorCharacteristic, "Color Characteristic"),
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(self.VISUAL.TextureCharacteristic, "Texture Characteristic"),
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(self.VISUAL.ShapeCharacteristic, "Shape Characteristic"),
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(self.DETECTION.DetectionResult, "Detection Result"),
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(self.DETECTION.ImageAnalysis, "Image Analysis"),
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(self.AGRI.SeverityLevel, "Severity Level"),
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(self.AGRI.EconomicImpact, "Economic Impact"),
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]
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for class_uri, label in classes:
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self.graph.add((class_uri, RDF.type, OWL.Class))
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self.graph.add((class_uri, RDFS.label, Literal(label)))
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def _define_disease_classes(self):
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"""Define specific mango disease classes"""
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# Mango is a subclass of Fruit
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self.graph.add((self.MANGO.MangoFruit, RDFS.subClassOf, self.MANGO.Fruit))
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# Disease taxonomy
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self.graph.add((self.DISEASE.FungalDisease, RDFS.subClassOf, self.DISEASE.Disease))
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self.graph.add((self.DISEASE.BacterialDisease, RDFS.subClassOf, self.DISEASE.Disease))
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# Specific mango diseases
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diseases = [
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(self.DISEASE.Alternaria, "Alternaria", self.DISEASE.FungalDisease),
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(self.DISEASE.Anthracnose, "Anthracnose", self.DISEASE.FungalDisease),
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(self.DISEASE.Aspergillus, "Aspergillus (Black Mould Rot)", self.DISEASE.FungalDisease),
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(self.DISEASE.Lasiodiplodia, "Lasiodiplodia (Stem and Rot)", self.DISEASE.FungalDisease),
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]
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for disease_uri, label, parent_class in diseases:
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self.graph.add((disease_uri, RDF.type, OWL.Class))
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self.graph.add((disease_uri, RDFS.label, Literal(label)))
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self.graph.add((disease_uri, RDFS.subClassOf, parent_class))
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def _define_visual_properties(self):
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"""Define visual characteristics and properties"""
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# Color properties
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color_chars = [
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(self.VISUAL.DarkBrown, "Dark Brown Color"),
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(self.VISUAL.Black, "Black Color"),
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(self.VISUAL.Orange, "Orange Color"),
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(self.VISUAL.Pink, "Pink Color"),
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(self.VISUAL.Green, "Green Color"),
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(self.VISUAL.Yellow, "Yellow Color"),
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(self.VISUAL.Red, "Red Color"),
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]
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for color_uri, label in color_chars:
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self.graph.add((color_uri, RDF.type, OWL.Class))
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self.graph.add((color_uri, RDFS.label, Literal(label)))
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self.graph.add((color_uri, RDFS.subClassOf, self.VISUAL.ColorCharacteristic))
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# Texture properties
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texture_chars = [
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(self.VISUAL.Smooth, "Smooth Texture"),
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(self.VISUAL.Rough, "Rough Texture"),
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(self.VISUAL.Fuzzy, "Fuzzy Texture"),
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(self.VISUAL.Irregular, "Irregular Texture"),
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(self.VISUAL.Concentric, "Concentric Pattern"),
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]
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for texture_uri, label in texture_chars:
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self.graph.add((texture_uri, RDF.type, OWL.Class))
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self.graph.add((texture_uri, RDFS.label, Literal(label)))
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self.graph.add((texture_uri, RDFS.subClassOf, self.VISUAL.TextureCharacteristic))
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# Shape properties
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shape_chars = [
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(self.VISUAL.Circular, "Circular Shape"),
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(self.VISUAL.Irregular, "Irregular Shape"),
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(self.VISUAL.Oval, "Oval Shape"),
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(self.VISUAL.Elongated, "Elongated Shape"),
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]
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for shape_uri, label in shape_chars:
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self.graph.add((shape_uri, RDF.type, OWL.Class))
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self.graph.add((shape_uri, RDFS.label, Literal(label)))
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self.graph.add((shape_uri, RDFS.subClassOf, self.VISUAL.ShapeCharacteristic))
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def _define_detection_properties(self):
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"""Define object and data properties for detection"""
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# Object properties
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properties = [
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(self.DETECTION.hasDisease, "has disease"),
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(self.DETECTION.hasVisualCharacteristic, "has visual characteristic"),
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(self.DETECTION.hasSeverityLevel, "has severity level"),
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(self.DETECTION.detectedIn, "detected in"),
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(self.DETECTION.causedBy, "caused by"),
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(self.DETECTION.affects, "affects"),
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(self.DETECTION.hasSymptom, "has symptom"),
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(self.AGRI.hasEconomicImpact, "has economic impact"),
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]
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for prop_uri, label in properties:
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self.graph.add((prop_uri, RDF.type, OWL.ObjectProperty))
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self.graph.add((prop_uri, RDFS.label, Literal(label)))
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# Data properties
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data_properties = [
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(self.DETECTION.severityPercentage, "severity percentage", XSD.float),
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(self.DETECTION.numberOfRegions, "number of regions", XSD.integer),
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(self.DETECTION.detectionConfidence, "detection confidence", XSD.float),
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(self.DETECTION.imageWidth, "image width", XSD.integer),
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(self.DETECTION.imageHeight, "image height", XSD.integer),
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(self.DETECTION.detectionTimestamp, "detection timestamp", XSD.dateTime),
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(self.VISUAL.hueValue, "hue value", XSD.integer),
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(self.VISUAL.saturationValue, "saturation value", XSD.integer),
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(self.VISUAL.brightnessValue, "brightness value", XSD.integer),
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(self.AGRI.marketabilityScore, "marketability score", XSD.float),
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]
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for prop_uri, label, datatype in data_properties:
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self.graph.add((prop_uri, RDF.type, OWL.DatatypeProperty))
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self.graph.add((prop_uri, RDFS.label, Literal(label)))
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self.graph.add((prop_uri, RDFS.range, datatype))
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def _define_severity_levels(self):
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"""Define severity level instances"""
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severity_levels = [
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(self.AGRI.Healthy, "Healthy", 0, 2),
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(self.AGRI.EarlyDisease, "Early Disease", 2, 8),
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(self.AGRI.ModerateDisease, "Moderate Disease", 8, 20),
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(self.AGRI.SevereDisease, "Severe Disease", 20, 40),
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(self.AGRI.CriticalDisease, "Critical Disease", 40, 100),
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]
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for level_uri, label, min_percent, max_percent in severity_levels:
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self.graph.add((level_uri, RDF.type, self.AGRI.SeverityLevel))
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self.graph.add((level_uri, RDFS.label, Literal(label)))
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self.graph.add((level_uri, self.DETECTION.severityPercentage, Literal(min_percent, datatype=XSD.float)))
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self.graph.add((level_uri, self.DETECTION.severityPercentage, Literal(max_percent, datatype=XSD.float)))
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def _define_causal_relationships(self):
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"""Define disease characteristics and causal relationships"""
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# Alternaria characteristics
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alternaria_symptoms = [
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(self.DISEASE.Alternaria, self.DETECTION.hasSymptom, self.VISUAL.DarkBrown),
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(self.DISEASE.Alternaria, self.DETECTION.hasSymptom, self.VISUAL.Black),
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(self.DISEASE.Alternaria, self.DETECTION.hasSymptom, self.VISUAL.Irregular),
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(self.DISEASE.Alternaria, self.DETECTION.hasSymptom, self.VISUAL.Concentric),
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]
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# Anthracnose characteristics
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anthracnose_symptoms = [
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(self.DISEASE.Anthracnose, self.DETECTION.hasSymptom, self.VISUAL.Black),
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(self.DISEASE.Anthracnose, self.DETECTION.hasSymptom, self.VISUAL.Orange),
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(self.DISEASE.Anthracnose, self.DETECTION.hasSymptom, self.VISUAL.Pink),
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(self.DISEASE.Anthracnose, self.DETECTION.hasSymptom, self.VISUAL.Circular),
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]
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# Aspergillus characteristics
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aspergillus_symptoms = [
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(self.DISEASE.Aspergillus, self.DETECTION.hasSymptom, self.VISUAL.Black),
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(self.DISEASE.Aspergillus, self.DETECTION.hasSymptom, self.VISUAL.Green),
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(self.DISEASE.Aspergillus, self.DETECTION.hasSymptom, self.VISUAL.Fuzzy),
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(self.DISEASE.Aspergillus, self.DETECTION.hasSymptom, self.VISUAL.Irregular),
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]
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# Lasiodiplodia characteristics
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lasiodiplodia_symptoms = [
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(self.DISEASE.Lasiodiplodia, self.DETECTION.hasSymptom, self.VISUAL.DarkBrown),
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(self.DISEASE.Lasiodiplodia, self.DETECTION.hasSymptom, self.VISUAL.Black),
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(self.DISEASE.Lasiodiplodia, self.DETECTION.hasSymptom, self.VISUAL.Irregular),
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]
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all_symptoms = alternaria_symptoms + anthracnose_symptoms + aspergillus_symptoms + lasiodiplodia_symptoms
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for subject, predicate, obj in all_symptoms:
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self.graph.add((subject, predicate, obj))
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def _define_temporal_aspects(self):
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"""Define temporal progression of diseases"""
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# Disease progression stages
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stages = [
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(self.DISEASE.EarlyStage, "Early Stage"),
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(self.DISEASE.DevelopingStage, "Developing Stage"),
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(self.DISEASE.AdvancedStage, "Advanced Stage"),
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(self.DISEASE.CriticalStage, "Critical Stage"),
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]
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for stage_uri, label in stages:
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self.graph.add((stage_uri, RDF.type, OWL.Class))
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self.graph.add((stage_uri, RDFS.label, Literal(label)))
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self.graph.add((stage_uri, RDFS.subClassOf, self.DISEASE.Disease))
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def _define_economic_impact(self):
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"""Define economic impact levels"""
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impact_levels = [
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(self.AGRI.NoImpact, "No Economic Impact", 100),
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(self.AGRI.MinimalImpact, "Minimal Impact", 85),
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(self.AGRI.ModerateImpact, "Moderate Impact", 60),
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(self.AGRI.SevereImpact, "Severe Impact", 30),
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(self.AGRI.CriticalImpact, "Critical Impact", 0),
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]
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for impact_uri, label, marketability in impact_levels:
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self.graph.add((impact_uri, RDF.type, self.AGRI.EconomicImpact))
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self.graph.add((impact_uri, RDFS.label, Literal(label)))
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self.graph.add((impact_uri, self.AGRI.marketabilityScore, Literal(marketability, datatype=XSD.float)))
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def _apply_reasoning(self):
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"""Apply OWL-RL reasoning to the ontology"""
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print("Applying OWL-RL reasoning...")
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# Apply OWL-RL inference rules
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owlrl.DeductiveClosure(owlrl.OWLRL_Semantics).expand(self.graph)
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print(f"Ontology size after reasoning: {len(self.graph)} triples")
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def create_detection_instance(self, image_path: str, detection_results: Dict) -> URIRef:
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"""Create a semantic instance of a disease detection result"""
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# Create unique URI for this detection
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detection_id = f"detection_{datetime.now().strftime('%Y%m%d_%H%M%S')}_{hash(image_path) % 10000}"
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detection_uri = self.DETECTION[detection_id]
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# Add basic detection information
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self.graph.add((detection_uri, RDF.type, self.DETECTION.DetectionResult))
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self.graph.add((detection_uri, RDFS.label, Literal(f"Detection of {os.path.basename(image_path)}")))
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self.graph.add((detection_uri, self.DETECTION.detectionTimestamp,
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Literal(datetime.now(), datatype=XSD.dateTime)))
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# Add image properties
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if 'image_properties' in detection_results:
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props = detection_results['image_properties']
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if 'width' in props:
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self.graph.add((detection_uri, self.DETECTION.imageWidth,
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Literal(props['width'], datatype=XSD.integer)))
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if 'height' in props:
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self.graph.add((detection_uri, self.DETECTION.imageHeight,
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Literal(props['height'], datatype=XSD.integer)))
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# Add detection results
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self.graph.add((detection_uri, self.DETECTION.severityPercentage,
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Literal(detection_results['severity_percentage'], datatype=XSD.float)))
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self.graph.add((detection_uri, self.DETECTION.numberOfRegions,
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Literal(detection_results['num_diseased_regions'], datatype=XSD.integer)))
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# Map disease level to semantic class
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| 335 |
-
disease_level = detection_results['disease_level']
|
| 336 |
-
severity_uri = self._map_severity_to_uri(disease_level)
|
| 337 |
-
if severity_uri:
|
| 338 |
-
self.graph.add((detection_uri, self.DETECTION.hasSeverityLevel, severity_uri))
|
| 339 |
-
|
| 340 |
-
# Infer likely diseases based on detection patterns
|
| 341 |
-
inferred_diseases = self._infer_diseases(detection_results)
|
| 342 |
-
for disease_uri in inferred_diseases:
|
| 343 |
-
self.graph.add((detection_uri, self.DETECTION.hasDisease, disease_uri))
|
| 344 |
-
|
| 345 |
-
# Calculate economic impact
|
| 346 |
-
economic_impact = self._calculate_economic_impact(detection_results['severity_percentage'])
|
| 347 |
-
self.graph.add((detection_uri, self.AGRI.hasEconomicImpact, economic_impact))
|
| 348 |
-
|
| 349 |
-
return detection_uri
|
| 350 |
-
|
| 351 |
-
def _map_severity_to_uri(self, disease_level: str) -> Optional[URIRef]:
|
| 352 |
-
"""Map disease level string to severity URI"""
|
| 353 |
-
mapping = {
|
| 354 |
-
"Healthy": self.AGRI.Healthy,
|
| 355 |
-
"Early Disease": self.AGRI.EarlyDisease,
|
| 356 |
-
"Moderate Disease": self.AGRI.ModerateDisease,
|
| 357 |
-
"Severe Disease": self.AGRI.SevereDisease,
|
| 358 |
-
"Critical Disease": self.AGRI.CriticalDisease,
|
| 359 |
-
}
|
| 360 |
-
return mapping.get(disease_level)
|
| 361 |
-
|
| 362 |
-
def _infer_diseases(self, detection_results: Dict) -> List[URIRef]:
|
| 363 |
-
"""Infer likely diseases based on detection characteristics"""
|
| 364 |
-
inferred = []
|
| 365 |
-
severity = detection_results['severity_percentage']
|
| 366 |
-
|
| 367 |
-
# Simple inference based on severity and patterns
|
| 368 |
-
# In a real system, this would use more sophisticated visual analysis
|
| 369 |
-
if severity > 5: # If disease detected
|
| 370 |
-
# For demonstration, we'll use basic heuristics
|
| 371 |
-
# In practice, this would analyze color, texture, shape patterns
|
| 372 |
-
if severity < 15:
|
| 373 |
-
# Early stage diseases - could be multiple
|
| 374 |
-
inferred.extend([self.DISEASE.Alternaria, self.DISEASE.Anthracnose])
|
| 375 |
-
elif severity < 30:
|
| 376 |
-
# Moderate stage - more specific inference needed
|
| 377 |
-
inferred.append(self.DISEASE.Anthracnose)
|
| 378 |
-
else:
|
| 379 |
-
# Severe cases - possibly aggressive diseases
|
| 380 |
-
inferred.extend([self.DISEASE.Aspergillus, self.DISEASE.Lasiodiplodia])
|
| 381 |
-
|
| 382 |
-
return inferred
|
| 383 |
-
|
| 384 |
-
def _calculate_economic_impact(self, severity: float) -> URIRef:
|
| 385 |
-
"""Calculate economic impact based on severity"""
|
| 386 |
-
if severity < 2:
|
| 387 |
-
return self.AGRI.NoImpact
|
| 388 |
-
elif severity < 8:
|
| 389 |
-
return self.AGRI.MinimalImpact
|
| 390 |
-
elif severity < 20:
|
| 391 |
-
return self.AGRI.ModerateImpact
|
| 392 |
-
elif severity < 40:
|
| 393 |
-
return self.AGRI.SevereImpact
|
| 394 |
-
else:
|
| 395 |
-
return self.AGRI.CriticalImpact
|
| 396 |
-
|
| 397 |
-
def process_image_with_semantics(self, image_path: str) -> Dict[str, Any]:
|
| 398 |
-
"""Process image with disease detection and create semantic annotations"""
|
| 399 |
-
print(f"Processing image with semantic analysis: {image_path}")
|
| 400 |
-
|
| 401 |
-
# Run disease detection
|
| 402 |
-
detection_results = self.detector.process_image(image_path)
|
| 403 |
-
|
| 404 |
-
# Add image properties
|
| 405 |
-
image = cv2.imread(image_path)
|
| 406 |
-
if image is not None:
|
| 407 |
-
detection_results['image_properties'] = {
|
| 408 |
-
'width': image.shape[1],
|
| 409 |
-
'height': image.shape[0],
|
| 410 |
-
'channels': image.shape[2] if len(image.shape) > 2 else 1
|
| 411 |
-
}
|
| 412 |
-
|
| 413 |
-
# Create semantic instance
|
| 414 |
-
detection_uri = self.create_detection_instance(image_path, detection_results)
|
| 415 |
-
|
| 416 |
-
# Query related semantic information
|
| 417 |
-
semantic_info = self.query_detection_semantics(detection_uri)
|
| 418 |
-
|
| 419 |
-
# Combine results
|
| 420 |
-
enhanced_results = {
|
| 421 |
-
**detection_results,
|
| 422 |
-
'semantic_uri': str(detection_uri),
|
| 423 |
-
'semantic_info': semantic_info,
|
| 424 |
-
'ontology_inferences': self._get_ontology_inferences(detection_uri)
|
| 425 |
-
}
|
| 426 |
-
|
| 427 |
-
return enhanced_results
|
| 428 |
-
|
| 429 |
-
def query_detection_semantics(self, detection_uri: URIRef) -> Dict[str, Any]:
|
| 430 |
-
"""Query semantic information about a detection"""
|
| 431 |
-
semantic_info = {
|
| 432 |
-
'diseases': [],
|
| 433 |
-
'severity_level': None,
|
| 434 |
-
'economic_impact': None,
|
| 435 |
-
'symptoms': [],
|
| 436 |
-
'recommendations': []
|
| 437 |
-
}
|
| 438 |
-
|
| 439 |
-
# Query diseases
|
| 440 |
-
query = f"""
|
| 441 |
-
PREFIX detection: <{self.DETECTION}>
|
| 442 |
-
PREFIX disease: <{self.DISEASE}>
|
| 443 |
-
PREFIX rdfs: <{RDFS}>
|
| 444 |
-
|
| 445 |
-
SELECT ?disease ?diseaseLabel WHERE {{
|
| 446 |
-
<{detection_uri}> detection:hasDisease ?disease .
|
| 447 |
-
?disease rdfs:label ?diseaseLabel .
|
| 448 |
-
}}
|
| 449 |
-
"""
|
| 450 |
-
|
| 451 |
-
for row in self.graph.query(query):
|
| 452 |
-
semantic_info['diseases'].append({
|
| 453 |
-
'uri': str(row.disease),
|
| 454 |
-
'label': str(row.diseaseLabel)
|
| 455 |
-
})
|
| 456 |
-
|
| 457 |
-
# Query severity level
|
| 458 |
-
query = f"""
|
| 459 |
-
PREFIX detection: <{self.DETECTION}>
|
| 460 |
-
PREFIX agri: <{self.AGRI}>
|
| 461 |
-
PREFIX rdfs: <{RDFS}>
|
| 462 |
-
|
| 463 |
-
SELECT ?severityLevel ?severityLabel WHERE {{
|
| 464 |
-
<{detection_uri}> detection:hasSeverityLevel ?severityLevel .
|
| 465 |
-
?severityLevel rdfs:label ?severityLabel .
|
| 466 |
-
}}
|
| 467 |
-
"""
|
| 468 |
-
|
| 469 |
-
for row in self.graph.query(query):
|
| 470 |
-
semantic_info['severity_level'] = {
|
| 471 |
-
'uri': str(row.severityLevel),
|
| 472 |
-
'label': str(row.severityLabel)
|
| 473 |
-
}
|
| 474 |
-
break
|
| 475 |
-
|
| 476 |
-
# Query economic impact
|
| 477 |
-
query = f"""
|
| 478 |
-
PREFIX agri: <{self.AGRI}>
|
| 479 |
-
PREFIX rdfs: <{RDFS}>
|
| 480 |
-
|
| 481 |
-
SELECT ?impact ?impactLabel ?marketability WHERE {{
|
| 482 |
-
<{detection_uri}> agri:hasEconomicImpact ?impact .
|
| 483 |
-
?impact rdfs:label ?impactLabel .
|
| 484 |
-
?impact agri:marketabilityScore ?marketability .
|
| 485 |
-
}}
|
| 486 |
-
"""
|
| 487 |
-
|
| 488 |
-
for row in self.graph.query(query):
|
| 489 |
-
semantic_info['economic_impact'] = {
|
| 490 |
-
'uri': str(row.impact),
|
| 491 |
-
'label': str(row.impactLabel),
|
| 492 |
-
'marketability_score': float(row.marketability)
|
| 493 |
-
}
|
| 494 |
-
break
|
| 495 |
-
|
| 496 |
-
return semantic_info
|
| 497 |
-
|
| 498 |
-
def _get_ontology_inferences(self, detection_uri: URIRef) -> List[str]:
|
| 499 |
-
"""Get ontology-based inferences and recommendations"""
|
| 500 |
-
inferences = []
|
| 501 |
-
|
| 502 |
-
# Query for related information using SPARQL
|
| 503 |
-
query = f"""
|
| 504 |
-
PREFIX detection: <{self.DETECTION}>
|
| 505 |
-
PREFIX disease: <{self.DISEASE}>
|
| 506 |
-
PREFIX visual: <{self.VISUAL}>
|
| 507 |
-
PREFIX rdfs: <{RDFS}>
|
| 508 |
-
|
| 509 |
-
SELECT ?disease ?symptom ?symptomLabel WHERE {{
|
| 510 |
-
<{detection_uri}> detection:hasDisease ?disease .
|
| 511 |
-
?disease detection:hasSymptom ?symptom .
|
| 512 |
-
?symptom rdfs:label ?symptomLabel .
|
| 513 |
-
}}
|
| 514 |
-
"""
|
| 515 |
-
|
| 516 |
-
symptoms = []
|
| 517 |
-
for row in self.graph.query(query):
|
| 518 |
-
symptoms.append(str(row.symptomLabel))
|
| 519 |
-
|
| 520 |
-
if symptoms:
|
| 521 |
-
inferences.append(f"Detected visual symptoms: {', '.join(symptoms)}")
|
| 522 |
-
|
| 523 |
-
# Add treatment recommendations based on ontology
|
| 524 |
-
inferences.extend(self._get_treatment_recommendations(detection_uri))
|
| 525 |
-
|
| 526 |
-
return inferences
|
| 527 |
-
|
| 528 |
-
def _get_treatment_recommendations(self, detection_uri: URIRef) -> List[str]:
|
| 529 |
-
"""Get treatment recommendations based on detected diseases"""
|
| 530 |
-
recommendations = []
|
| 531 |
-
|
| 532 |
-
# Query detected diseases
|
| 533 |
-
query = f"""
|
| 534 |
-
PREFIX detection: <{self.DETECTION}>
|
| 535 |
-
PREFIX disease: <{self.DISEASE}>
|
| 536 |
-
PREFIX rdfs: <{RDFS}>
|
| 537 |
-
|
| 538 |
-
SELECT ?disease ?diseaseLabel WHERE {{
|
| 539 |
-
<{detection_uri}> detection:hasDisease ?disease .
|
| 540 |
-
?disease rdfs:label ?diseaseLabel .
|
| 541 |
-
}}
|
| 542 |
-
"""
|
| 543 |
-
|
| 544 |
-
disease_labels = []
|
| 545 |
-
for row in self.graph.query(query):
|
| 546 |
-
disease_labels.append(str(row.diseaseLabel))
|
| 547 |
-
|
| 548 |
-
# Provide recommendations based on diseases
|
| 549 |
-
if "Alternaria" in disease_labels:
|
| 550 |
-
recommendations.append("Apply copper-based fungicide for Alternaria control")
|
| 551 |
-
recommendations.append("Improve air circulation and reduce humidity")
|
| 552 |
-
|
| 553 |
-
if "Anthracnose" in disease_labels:
|
| 554 |
-
recommendations.append("Use preventive fungicide sprays for Anthracnose")
|
| 555 |
-
recommendations.append("Remove infected fruits and debris")
|
| 556 |
-
|
| 557 |
-
if "Aspergillus" in disease_labels:
|
| 558 |
-
recommendations.append("Improve storage conditions to prevent Aspergillus")
|
| 559 |
-
recommendations.append("Reduce moisture and temperature in storage")
|
| 560 |
-
|
| 561 |
-
if "Lasiodiplodia" in disease_labels:
|
| 562 |
-
recommendations.append("Improve field sanitation for Lasiodiplodia control")
|
| 563 |
-
recommendations.append("Avoid mechanical damage during harvest")
|
| 564 |
-
|
| 565 |
-
return recommendations
|
| 566 |
-
|
| 567 |
-
def export_ontology(self, output_path: str, format: str = "turtle"):
|
| 568 |
-
"""Export the ontology to a file"""
|
| 569 |
-
print(f"Exporting ontology to {output_path} in {format} format...")
|
| 570 |
-
|
| 571 |
-
with open(output_path, 'w', encoding='utf-8') as f:
|
| 572 |
-
f.write(self.graph.serialize(format=format))
|
| 573 |
-
|
| 574 |
-
print(f"Ontology exported successfully!")
|
| 575 |
-
|
| 576 |
-
def get_ontology_statistics(self) -> Dict[str, int]:
|
| 577 |
-
"""Get statistics about the ontology"""
|
| 578 |
-
stats = {
|
| 579 |
-
'total_triples': len(self.graph),
|
| 580 |
-
'classes': len(list(self.graph.subjects(RDF.type, OWL.Class))),
|
| 581 |
-
'object_properties': len(list(self.graph.subjects(RDF.type, OWL.ObjectProperty))),
|
| 582 |
-
'datatype_properties': len(list(self.graph.subjects(RDF.type, OWL.DatatypeProperty))),
|
| 583 |
-
'individuals': len(list(self.graph.subjects(RDF.type, self.DETECTION.DetectionResult))),
|
| 584 |
-
}
|
| 585 |
-
return stats
|
| 586 |
-
|
| 587 |
-
def query_ontology(self, sparql_query: str) -> List[Dict]:
|
| 588 |
-
"""Execute a SPARQL query on the ontology"""
|
| 589 |
-
results = []
|
| 590 |
-
for row in self.graph.query(sparql_query):
|
| 591 |
-
result_dict = {}
|
| 592 |
-
for var in row.labels:
|
| 593 |
-
result_dict[var] = str(row[var])
|
| 594 |
-
results.append(result_dict)
|
| 595 |
-
return results
|
| 596 |
-
|
| 597 |
-
def demonstrate_semantic_detection():
|
| 598 |
-
"""Demonstrate the semantic mango disease detection system"""
|
| 599 |
-
print("=" * 80)
|
| 600 |
-
print("SEMANTIC WEB ONTOLOGY FOR MANGO DISEASE DETECTION")
|
| 601 |
-
print("=" * 80)
|
| 602 |
-
print("Features:")
|
| 603 |
-
print("- OWL-RL reasoning for enhanced disease inference")
|
| 604 |
-
print("- Semantic annotation of detection results")
|
| 605 |
-
print("- Economic impact assessment")
|
| 606 |
-
print("- Treatment recommendations")
|
| 607 |
-
print("- SPARQL queries for knowledge discovery")
|
| 608 |
-
print()
|
| 609 |
-
|
| 610 |
-
# Initialize semantic system
|
| 611 |
-
print("Initializing semantic ontology manager...")
|
| 612 |
-
ontology_manager = MangoOntologyManager()
|
| 613 |
-
|
| 614 |
-
# Show ontology statistics
|
| 615 |
-
stats = ontology_manager.get_ontology_statistics()
|
| 616 |
-
print(f"Ontology Statistics:")
|
| 617 |
-
for key, value in stats.items():
|
| 618 |
-
print(f" {key.replace('_', ' ').title()}: {value}")
|
| 619 |
-
print()
|
| 620 |
-
|
| 621 |
-
return ontology_manager
|
| 622 |
-
|
| 623 |
-
if __name__ == "__main__":
|
| 624 |
-
# Demonstrate the system
|
| 625 |
demonstrate_semantic_detection()
|
|
|
|
| 1 |
+
"""
|
| 2 |
+
Mango Disease Detection Semantic Web Ontology
|
| 3 |
+
Integrates OWL-RL reasoning with computer vision disease detection
|
| 4 |
+
"""
|
| 5 |
+
|
| 6 |
+
import os
|
| 7 |
+
import json
|
| 8 |
+
from datetime import datetime
|
| 9 |
+
from typing import Dict, List, Tuple, Optional, Any
|
| 10 |
+
import cv2
|
| 11 |
+
import numpy as np
|
| 12 |
+
|
| 13 |
+
# RDF and OWL libraries
|
| 14 |
+
from rdflib import Graph, Namespace, Literal, URIRef, BNode
|
| 15 |
+
from rdflib.namespace import RDF, RDFS, OWL, XSD
|
| 16 |
+
import owlrl
|
| 17 |
+
|
| 18 |
+
# Import our disease detection algorithm
|
| 19 |
+
from src/app import FruitDiseaseDetector
|
| 20 |
+
|
| 21 |
+
class MangoOntologyManager:
|
| 22 |
+
"""
|
| 23 |
+
Semantic Web Ontology Manager for Mango Disease Detection
|
| 24 |
+
Uses OWL-RL reasoning to enhance disease detection with domain knowledge
|
| 25 |
+
"""
|
| 26 |
+
|
| 27 |
+
def __init__(self):
|
| 28 |
+
# Initialize RDF graph and namespaces
|
| 29 |
+
self.graph = Graph()
|
| 30 |
+
|
| 31 |
+
# Define namespaces for our ontology
|
| 32 |
+
self.MANGO = Namespace("http://spotradar.org/mango-disease#")
|
| 33 |
+
self.DISEASE = Namespace("http://spotradar.org/disease#")
|
| 34 |
+
self.DETECTION = Namespace("http://spotradar.org/detection#")
|
| 35 |
+
self.VISUAL = Namespace("http://spotradar.org/visual#")
|
| 36 |
+
self.AGRI = Namespace("http://spotradar.org/agriculture#")
|
| 37 |
+
|
| 38 |
+
# Bind namespaces to graph
|
| 39 |
+
self.graph.bind("mango", self.MANGO)
|
| 40 |
+
self.graph.bind("disease", self.DISEASE)
|
| 41 |
+
self.graph.bind("detection", self.DETECTION)
|
| 42 |
+
self.graph.bind("visual", self.VISUAL)
|
| 43 |
+
self.graph.bind("agri", self.AGRI)
|
| 44 |
+
self.graph.bind("owl", OWL)
|
| 45 |
+
self.graph.bind("rdfs", RDFS)
|
| 46 |
+
|
| 47 |
+
# Initialize disease detector
|
| 48 |
+
self.detector = FruitDiseaseDetector()
|
| 49 |
+
|
| 50 |
+
# Build the ontology
|
| 51 |
+
self._build_ontology()
|
| 52 |
+
|
| 53 |
+
# Apply OWL-RL reasoning
|
| 54 |
+
self._apply_reasoning()
|
| 55 |
+
|
| 56 |
+
def _build_ontology(self):
|
| 57 |
+
"""Build the complete mango disease ontology"""
|
| 58 |
+
print("Building mango disease ontology...")
|
| 59 |
+
|
| 60 |
+
# 1. Define top-level classes
|
| 61 |
+
self._define_core_classes()
|
| 62 |
+
|
| 63 |
+
# 2. Define mango disease classes
|
| 64 |
+
self._define_disease_classes()
|
| 65 |
+
|
| 66 |
+
# 3. Define visual characteristics
|
| 67 |
+
self._define_visual_properties()
|
| 68 |
+
|
| 69 |
+
# 4. Define detection properties
|
| 70 |
+
self._define_detection_properties()
|
| 71 |
+
|
| 72 |
+
# 5. Define severity levels
|
| 73 |
+
self._define_severity_levels()
|
| 74 |
+
|
| 75 |
+
# 6. Define causal relationships
|
| 76 |
+
self._define_causal_relationships()
|
| 77 |
+
|
| 78 |
+
# 7. Define temporal aspects
|
| 79 |
+
self._define_temporal_aspects()
|
| 80 |
+
|
| 81 |
+
# 8. Define economic impact
|
| 82 |
+
self._define_economic_impact()
|
| 83 |
+
|
| 84 |
+
print("Ontology structure built successfully!")
|
| 85 |
+
|
| 86 |
+
def _define_core_classes(self):
|
| 87 |
+
"""Define fundamental classes in the ontology"""
|
| 88 |
+
# Core classes
|
| 89 |
+
classes = [
|
| 90 |
+
(self.MANGO.Fruit, "Fruit"),
|
| 91 |
+
(self.MANGO.MangoFruit, "Mango Fruit"),
|
| 92 |
+
(self.DISEASE.Disease, "Disease"),
|
| 93 |
+
(self.DISEASE.FungalDisease, "Fungal Disease"),
|
| 94 |
+
(self.DISEASE.BacterialDisease, "Bacterial Disease"),
|
| 95 |
+
(self.VISUAL.VisualCharacteristic, "Visual Characteristic"),
|
| 96 |
+
(self.VISUAL.ColorCharacteristic, "Color Characteristic"),
|
| 97 |
+
(self.VISUAL.TextureCharacteristic, "Texture Characteristic"),
|
| 98 |
+
(self.VISUAL.ShapeCharacteristic, "Shape Characteristic"),
|
| 99 |
+
(self.DETECTION.DetectionResult, "Detection Result"),
|
| 100 |
+
(self.DETECTION.ImageAnalysis, "Image Analysis"),
|
| 101 |
+
(self.AGRI.SeverityLevel, "Severity Level"),
|
| 102 |
+
(self.AGRI.EconomicImpact, "Economic Impact"),
|
| 103 |
+
]
|
| 104 |
+
|
| 105 |
+
for class_uri, label in classes:
|
| 106 |
+
self.graph.add((class_uri, RDF.type, OWL.Class))
|
| 107 |
+
self.graph.add((class_uri, RDFS.label, Literal(label)))
|
| 108 |
+
|
| 109 |
+
def _define_disease_classes(self):
|
| 110 |
+
"""Define specific mango disease classes"""
|
| 111 |
+
# Mango is a subclass of Fruit
|
| 112 |
+
self.graph.add((self.MANGO.MangoFruit, RDFS.subClassOf, self.MANGO.Fruit))
|
| 113 |
+
|
| 114 |
+
# Disease taxonomy
|
| 115 |
+
self.graph.add((self.DISEASE.FungalDisease, RDFS.subClassOf, self.DISEASE.Disease))
|
| 116 |
+
self.graph.add((self.DISEASE.BacterialDisease, RDFS.subClassOf, self.DISEASE.Disease))
|
| 117 |
+
|
| 118 |
+
# Specific mango diseases
|
| 119 |
+
diseases = [
|
| 120 |
+
(self.DISEASE.Alternaria, "Alternaria", self.DISEASE.FungalDisease),
|
| 121 |
+
(self.DISEASE.Anthracnose, "Anthracnose", self.DISEASE.FungalDisease),
|
| 122 |
+
(self.DISEASE.Aspergillus, "Aspergillus (Black Mould Rot)", self.DISEASE.FungalDisease),
|
| 123 |
+
(self.DISEASE.Lasiodiplodia, "Lasiodiplodia (Stem and Rot)", self.DISEASE.FungalDisease),
|
| 124 |
+
]
|
| 125 |
+
|
| 126 |
+
for disease_uri, label, parent_class in diseases:
|
| 127 |
+
self.graph.add((disease_uri, RDF.type, OWL.Class))
|
| 128 |
+
self.graph.add((disease_uri, RDFS.label, Literal(label)))
|
| 129 |
+
self.graph.add((disease_uri, RDFS.subClassOf, parent_class))
|
| 130 |
+
|
| 131 |
+
def _define_visual_properties(self):
|
| 132 |
+
"""Define visual characteristics and properties"""
|
| 133 |
+
# Color properties
|
| 134 |
+
color_chars = [
|
| 135 |
+
(self.VISUAL.DarkBrown, "Dark Brown Color"),
|
| 136 |
+
(self.VISUAL.Black, "Black Color"),
|
| 137 |
+
(self.VISUAL.Orange, "Orange Color"),
|
| 138 |
+
(self.VISUAL.Pink, "Pink Color"),
|
| 139 |
+
(self.VISUAL.Green, "Green Color"),
|
| 140 |
+
(self.VISUAL.Yellow, "Yellow Color"),
|
| 141 |
+
(self.VISUAL.Red, "Red Color"),
|
| 142 |
+
]
|
| 143 |
+
|
| 144 |
+
for color_uri, label in color_chars:
|
| 145 |
+
self.graph.add((color_uri, RDF.type, OWL.Class))
|
| 146 |
+
self.graph.add((color_uri, RDFS.label, Literal(label)))
|
| 147 |
+
self.graph.add((color_uri, RDFS.subClassOf, self.VISUAL.ColorCharacteristic))
|
| 148 |
+
|
| 149 |
+
# Texture properties
|
| 150 |
+
texture_chars = [
|
| 151 |
+
(self.VISUAL.Smooth, "Smooth Texture"),
|
| 152 |
+
(self.VISUAL.Rough, "Rough Texture"),
|
| 153 |
+
(self.VISUAL.Fuzzy, "Fuzzy Texture"),
|
| 154 |
+
(self.VISUAL.Irregular, "Irregular Texture"),
|
| 155 |
+
(self.VISUAL.Concentric, "Concentric Pattern"),
|
| 156 |
+
]
|
| 157 |
+
|
| 158 |
+
for texture_uri, label in texture_chars:
|
| 159 |
+
self.graph.add((texture_uri, RDF.type, OWL.Class))
|
| 160 |
+
self.graph.add((texture_uri, RDFS.label, Literal(label)))
|
| 161 |
+
self.graph.add((texture_uri, RDFS.subClassOf, self.VISUAL.TextureCharacteristic))
|
| 162 |
+
|
| 163 |
+
# Shape properties
|
| 164 |
+
shape_chars = [
|
| 165 |
+
(self.VISUAL.Circular, "Circular Shape"),
|
| 166 |
+
(self.VISUAL.Irregular, "Irregular Shape"),
|
| 167 |
+
(self.VISUAL.Oval, "Oval Shape"),
|
| 168 |
+
(self.VISUAL.Elongated, "Elongated Shape"),
|
| 169 |
+
]
|
| 170 |
+
|
| 171 |
+
for shape_uri, label in shape_chars:
|
| 172 |
+
self.graph.add((shape_uri, RDF.type, OWL.Class))
|
| 173 |
+
self.graph.add((shape_uri, RDFS.label, Literal(label)))
|
| 174 |
+
self.graph.add((shape_uri, RDFS.subClassOf, self.VISUAL.ShapeCharacteristic))
|
| 175 |
+
|
| 176 |
+
def _define_detection_properties(self):
|
| 177 |
+
"""Define object and data properties for detection"""
|
| 178 |
+
# Object properties
|
| 179 |
+
properties = [
|
| 180 |
+
(self.DETECTION.hasDisease, "has disease"),
|
| 181 |
+
(self.DETECTION.hasVisualCharacteristic, "has visual characteristic"),
|
| 182 |
+
(self.DETECTION.hasSeverityLevel, "has severity level"),
|
| 183 |
+
(self.DETECTION.detectedIn, "detected in"),
|
| 184 |
+
(self.DETECTION.causedBy, "caused by"),
|
| 185 |
+
(self.DETECTION.affects, "affects"),
|
| 186 |
+
(self.DETECTION.hasSymptom, "has symptom"),
|
| 187 |
+
(self.AGRI.hasEconomicImpact, "has economic impact"),
|
| 188 |
+
]
|
| 189 |
+
|
| 190 |
+
for prop_uri, label in properties:
|
| 191 |
+
self.graph.add((prop_uri, RDF.type, OWL.ObjectProperty))
|
| 192 |
+
self.graph.add((prop_uri, RDFS.label, Literal(label)))
|
| 193 |
+
|
| 194 |
+
# Data properties
|
| 195 |
+
data_properties = [
|
| 196 |
+
(self.DETECTION.severityPercentage, "severity percentage", XSD.float),
|
| 197 |
+
(self.DETECTION.numberOfRegions, "number of regions", XSD.integer),
|
| 198 |
+
(self.DETECTION.detectionConfidence, "detection confidence", XSD.float),
|
| 199 |
+
(self.DETECTION.imageWidth, "image width", XSD.integer),
|
| 200 |
+
(self.DETECTION.imageHeight, "image height", XSD.integer),
|
| 201 |
+
(self.DETECTION.detectionTimestamp, "detection timestamp", XSD.dateTime),
|
| 202 |
+
(self.VISUAL.hueValue, "hue value", XSD.integer),
|
| 203 |
+
(self.VISUAL.saturationValue, "saturation value", XSD.integer),
|
| 204 |
+
(self.VISUAL.brightnessValue, "brightness value", XSD.integer),
|
| 205 |
+
(self.AGRI.marketabilityScore, "marketability score", XSD.float),
|
| 206 |
+
]
|
| 207 |
+
|
| 208 |
+
for prop_uri, label, datatype in data_properties:
|
| 209 |
+
self.graph.add((prop_uri, RDF.type, OWL.DatatypeProperty))
|
| 210 |
+
self.graph.add((prop_uri, RDFS.label, Literal(label)))
|
| 211 |
+
self.graph.add((prop_uri, RDFS.range, datatype))
|
| 212 |
+
|
| 213 |
+
def _define_severity_levels(self):
|
| 214 |
+
"""Define severity level instances"""
|
| 215 |
+
severity_levels = [
|
| 216 |
+
(self.AGRI.Healthy, "Healthy", 0, 2),
|
| 217 |
+
(self.AGRI.EarlyDisease, "Early Disease", 2, 8),
|
| 218 |
+
(self.AGRI.ModerateDisease, "Moderate Disease", 8, 20),
|
| 219 |
+
(self.AGRI.SevereDisease, "Severe Disease", 20, 40),
|
| 220 |
+
(self.AGRI.CriticalDisease, "Critical Disease", 40, 100),
|
| 221 |
+
]
|
| 222 |
+
|
| 223 |
+
for level_uri, label, min_percent, max_percent in severity_levels:
|
| 224 |
+
self.graph.add((level_uri, RDF.type, self.AGRI.SeverityLevel))
|
| 225 |
+
self.graph.add((level_uri, RDFS.label, Literal(label)))
|
| 226 |
+
self.graph.add((level_uri, self.DETECTION.severityPercentage, Literal(min_percent, datatype=XSD.float)))
|
| 227 |
+
self.graph.add((level_uri, self.DETECTION.severityPercentage, Literal(max_percent, datatype=XSD.float)))
|
| 228 |
+
|
| 229 |
+
def _define_causal_relationships(self):
|
| 230 |
+
"""Define disease characteristics and causal relationships"""
|
| 231 |
+
# Alternaria characteristics
|
| 232 |
+
alternaria_symptoms = [
|
| 233 |
+
(self.DISEASE.Alternaria, self.DETECTION.hasSymptom, self.VISUAL.DarkBrown),
|
| 234 |
+
(self.DISEASE.Alternaria, self.DETECTION.hasSymptom, self.VISUAL.Black),
|
| 235 |
+
(self.DISEASE.Alternaria, self.DETECTION.hasSymptom, self.VISUAL.Irregular),
|
| 236 |
+
(self.DISEASE.Alternaria, self.DETECTION.hasSymptom, self.VISUAL.Concentric),
|
| 237 |
+
]
|
| 238 |
+
|
| 239 |
+
# Anthracnose characteristics
|
| 240 |
+
anthracnose_symptoms = [
|
| 241 |
+
(self.DISEASE.Anthracnose, self.DETECTION.hasSymptom, self.VISUAL.Black),
|
| 242 |
+
(self.DISEASE.Anthracnose, self.DETECTION.hasSymptom, self.VISUAL.Orange),
|
| 243 |
+
(self.DISEASE.Anthracnose, self.DETECTION.hasSymptom, self.VISUAL.Pink),
|
| 244 |
+
(self.DISEASE.Anthracnose, self.DETECTION.hasSymptom, self.VISUAL.Circular),
|
| 245 |
+
]
|
| 246 |
+
|
| 247 |
+
# Aspergillus characteristics
|
| 248 |
+
aspergillus_symptoms = [
|
| 249 |
+
(self.DISEASE.Aspergillus, self.DETECTION.hasSymptom, self.VISUAL.Black),
|
| 250 |
+
(self.DISEASE.Aspergillus, self.DETECTION.hasSymptom, self.VISUAL.Green),
|
| 251 |
+
(self.DISEASE.Aspergillus, self.DETECTION.hasSymptom, self.VISUAL.Fuzzy),
|
| 252 |
+
(self.DISEASE.Aspergillus, self.DETECTION.hasSymptom, self.VISUAL.Irregular),
|
| 253 |
+
]
|
| 254 |
+
|
| 255 |
+
# Lasiodiplodia characteristics
|
| 256 |
+
lasiodiplodia_symptoms = [
|
| 257 |
+
(self.DISEASE.Lasiodiplodia, self.DETECTION.hasSymptom, self.VISUAL.DarkBrown),
|
| 258 |
+
(self.DISEASE.Lasiodiplodia, self.DETECTION.hasSymptom, self.VISUAL.Black),
|
| 259 |
+
(self.DISEASE.Lasiodiplodia, self.DETECTION.hasSymptom, self.VISUAL.Irregular),
|
| 260 |
+
]
|
| 261 |
+
|
| 262 |
+
all_symptoms = alternaria_symptoms + anthracnose_symptoms + aspergillus_symptoms + lasiodiplodia_symptoms
|
| 263 |
+
|
| 264 |
+
for subject, predicate, obj in all_symptoms:
|
| 265 |
+
self.graph.add((subject, predicate, obj))
|
| 266 |
+
|
| 267 |
+
def _define_temporal_aspects(self):
|
| 268 |
+
"""Define temporal progression of diseases"""
|
| 269 |
+
# Disease progression stages
|
| 270 |
+
stages = [
|
| 271 |
+
(self.DISEASE.EarlyStage, "Early Stage"),
|
| 272 |
+
(self.DISEASE.DevelopingStage, "Developing Stage"),
|
| 273 |
+
(self.DISEASE.AdvancedStage, "Advanced Stage"),
|
| 274 |
+
(self.DISEASE.CriticalStage, "Critical Stage"),
|
| 275 |
+
]
|
| 276 |
+
|
| 277 |
+
for stage_uri, label in stages:
|
| 278 |
+
self.graph.add((stage_uri, RDF.type, OWL.Class))
|
| 279 |
+
self.graph.add((stage_uri, RDFS.label, Literal(label)))
|
| 280 |
+
self.graph.add((stage_uri, RDFS.subClassOf, self.DISEASE.Disease))
|
| 281 |
+
|
| 282 |
+
def _define_economic_impact(self):
|
| 283 |
+
"""Define economic impact levels"""
|
| 284 |
+
impact_levels = [
|
| 285 |
+
(self.AGRI.NoImpact, "No Economic Impact", 100),
|
| 286 |
+
(self.AGRI.MinimalImpact, "Minimal Impact", 85),
|
| 287 |
+
(self.AGRI.ModerateImpact, "Moderate Impact", 60),
|
| 288 |
+
(self.AGRI.SevereImpact, "Severe Impact", 30),
|
| 289 |
+
(self.AGRI.CriticalImpact, "Critical Impact", 0),
|
| 290 |
+
]
|
| 291 |
+
|
| 292 |
+
for impact_uri, label, marketability in impact_levels:
|
| 293 |
+
self.graph.add((impact_uri, RDF.type, self.AGRI.EconomicImpact))
|
| 294 |
+
self.graph.add((impact_uri, RDFS.label, Literal(label)))
|
| 295 |
+
self.graph.add((impact_uri, self.AGRI.marketabilityScore, Literal(marketability, datatype=XSD.float)))
|
| 296 |
+
|
| 297 |
+
def _apply_reasoning(self):
|
| 298 |
+
"""Apply OWL-RL reasoning to the ontology"""
|
| 299 |
+
print("Applying OWL-RL reasoning...")
|
| 300 |
+
|
| 301 |
+
# Apply OWL-RL inference rules
|
| 302 |
+
owlrl.DeductiveClosure(owlrl.OWLRL_Semantics).expand(self.graph)
|
| 303 |
+
|
| 304 |
+
print(f"Ontology size after reasoning: {len(self.graph)} triples")
|
| 305 |
+
|
| 306 |
+
def create_detection_instance(self, image_path: str, detection_results: Dict) -> URIRef:
|
| 307 |
+
"""Create a semantic instance of a disease detection result"""
|
| 308 |
+
# Create unique URI for this detection
|
| 309 |
+
detection_id = f"detection_{datetime.now().strftime('%Y%m%d_%H%M%S')}_{hash(image_path) % 10000}"
|
| 310 |
+
detection_uri = self.DETECTION[detection_id]
|
| 311 |
+
|
| 312 |
+
# Add basic detection information
|
| 313 |
+
self.graph.add((detection_uri, RDF.type, self.DETECTION.DetectionResult))
|
| 314 |
+
self.graph.add((detection_uri, RDFS.label, Literal(f"Detection of {os.path.basename(image_path)}")))
|
| 315 |
+
self.graph.add((detection_uri, self.DETECTION.detectionTimestamp,
|
| 316 |
+
Literal(datetime.now(), datatype=XSD.dateTime)))
|
| 317 |
+
|
| 318 |
+
# Add image properties
|
| 319 |
+
if 'image_properties' in detection_results:
|
| 320 |
+
props = detection_results['image_properties']
|
| 321 |
+
if 'width' in props:
|
| 322 |
+
self.graph.add((detection_uri, self.DETECTION.imageWidth,
|
| 323 |
+
Literal(props['width'], datatype=XSD.integer)))
|
| 324 |
+
if 'height' in props:
|
| 325 |
+
self.graph.add((detection_uri, self.DETECTION.imageHeight,
|
| 326 |
+
Literal(props['height'], datatype=XSD.integer)))
|
| 327 |
+
|
| 328 |
+
# Add detection results
|
| 329 |
+
self.graph.add((detection_uri, self.DETECTION.severityPercentage,
|
| 330 |
+
Literal(detection_results['severity_percentage'], datatype=XSD.float)))
|
| 331 |
+
self.graph.add((detection_uri, self.DETECTION.numberOfRegions,
|
| 332 |
+
Literal(detection_results['num_diseased_regions'], datatype=XSD.integer)))
|
| 333 |
+
|
| 334 |
+
# Map disease level to semantic class
|
| 335 |
+
disease_level = detection_results['disease_level']
|
| 336 |
+
severity_uri = self._map_severity_to_uri(disease_level)
|
| 337 |
+
if severity_uri:
|
| 338 |
+
self.graph.add((detection_uri, self.DETECTION.hasSeverityLevel, severity_uri))
|
| 339 |
+
|
| 340 |
+
# Infer likely diseases based on detection patterns
|
| 341 |
+
inferred_diseases = self._infer_diseases(detection_results)
|
| 342 |
+
for disease_uri in inferred_diseases:
|
| 343 |
+
self.graph.add((detection_uri, self.DETECTION.hasDisease, disease_uri))
|
| 344 |
+
|
| 345 |
+
# Calculate economic impact
|
| 346 |
+
economic_impact = self._calculate_economic_impact(detection_results['severity_percentage'])
|
| 347 |
+
self.graph.add((detection_uri, self.AGRI.hasEconomicImpact, economic_impact))
|
| 348 |
+
|
| 349 |
+
return detection_uri
|
| 350 |
+
|
| 351 |
+
def _map_severity_to_uri(self, disease_level: str) -> Optional[URIRef]:
|
| 352 |
+
"""Map disease level string to severity URI"""
|
| 353 |
+
mapping = {
|
| 354 |
+
"Healthy": self.AGRI.Healthy,
|
| 355 |
+
"Early Disease": self.AGRI.EarlyDisease,
|
| 356 |
+
"Moderate Disease": self.AGRI.ModerateDisease,
|
| 357 |
+
"Severe Disease": self.AGRI.SevereDisease,
|
| 358 |
+
"Critical Disease": self.AGRI.CriticalDisease,
|
| 359 |
+
}
|
| 360 |
+
return mapping.get(disease_level)
|
| 361 |
+
|
| 362 |
+
def _infer_diseases(self, detection_results: Dict) -> List[URIRef]:
|
| 363 |
+
"""Infer likely diseases based on detection characteristics"""
|
| 364 |
+
inferred = []
|
| 365 |
+
severity = detection_results['severity_percentage']
|
| 366 |
+
|
| 367 |
+
# Simple inference based on severity and patterns
|
| 368 |
+
# In a real system, this would use more sophisticated visual analysis
|
| 369 |
+
if severity > 5: # If disease detected
|
| 370 |
+
# For demonstration, we'll use basic heuristics
|
| 371 |
+
# In practice, this would analyze color, texture, shape patterns
|
| 372 |
+
if severity < 15:
|
| 373 |
+
# Early stage diseases - could be multiple
|
| 374 |
+
inferred.extend([self.DISEASE.Alternaria, self.DISEASE.Anthracnose])
|
| 375 |
+
elif severity < 30:
|
| 376 |
+
# Moderate stage - more specific inference needed
|
| 377 |
+
inferred.append(self.DISEASE.Anthracnose)
|
| 378 |
+
else:
|
| 379 |
+
# Severe cases - possibly aggressive diseases
|
| 380 |
+
inferred.extend([self.DISEASE.Aspergillus, self.DISEASE.Lasiodiplodia])
|
| 381 |
+
|
| 382 |
+
return inferred
|
| 383 |
+
|
| 384 |
+
def _calculate_economic_impact(self, severity: float) -> URIRef:
|
| 385 |
+
"""Calculate economic impact based on severity"""
|
| 386 |
+
if severity < 2:
|
| 387 |
+
return self.AGRI.NoImpact
|
| 388 |
+
elif severity < 8:
|
| 389 |
+
return self.AGRI.MinimalImpact
|
| 390 |
+
elif severity < 20:
|
| 391 |
+
return self.AGRI.ModerateImpact
|
| 392 |
+
elif severity < 40:
|
| 393 |
+
return self.AGRI.SevereImpact
|
| 394 |
+
else:
|
| 395 |
+
return self.AGRI.CriticalImpact
|
| 396 |
+
|
| 397 |
+
def process_image_with_semantics(self, image_path: str) -> Dict[str, Any]:
|
| 398 |
+
"""Process image with disease detection and create semantic annotations"""
|
| 399 |
+
print(f"Processing image with semantic analysis: {image_path}")
|
| 400 |
+
|
| 401 |
+
# Run disease detection
|
| 402 |
+
detection_results = self.detector.process_image(image_path)
|
| 403 |
+
|
| 404 |
+
# Add image properties
|
| 405 |
+
image = cv2.imread(image_path)
|
| 406 |
+
if image is not None:
|
| 407 |
+
detection_results['image_properties'] = {
|
| 408 |
+
'width': image.shape[1],
|
| 409 |
+
'height': image.shape[0],
|
| 410 |
+
'channels': image.shape[2] if len(image.shape) > 2 else 1
|
| 411 |
+
}
|
| 412 |
+
|
| 413 |
+
# Create semantic instance
|
| 414 |
+
detection_uri = self.create_detection_instance(image_path, detection_results)
|
| 415 |
+
|
| 416 |
+
# Query related semantic information
|
| 417 |
+
semantic_info = self.query_detection_semantics(detection_uri)
|
| 418 |
+
|
| 419 |
+
# Combine results
|
| 420 |
+
enhanced_results = {
|
| 421 |
+
**detection_results,
|
| 422 |
+
'semantic_uri': str(detection_uri),
|
| 423 |
+
'semantic_info': semantic_info,
|
| 424 |
+
'ontology_inferences': self._get_ontology_inferences(detection_uri)
|
| 425 |
+
}
|
| 426 |
+
|
| 427 |
+
return enhanced_results
|
| 428 |
+
|
| 429 |
+
def query_detection_semantics(self, detection_uri: URIRef) -> Dict[str, Any]:
|
| 430 |
+
"""Query semantic information about a detection"""
|
| 431 |
+
semantic_info = {
|
| 432 |
+
'diseases': [],
|
| 433 |
+
'severity_level': None,
|
| 434 |
+
'economic_impact': None,
|
| 435 |
+
'symptoms': [],
|
| 436 |
+
'recommendations': []
|
| 437 |
+
}
|
| 438 |
+
|
| 439 |
+
# Query diseases
|
| 440 |
+
query = f"""
|
| 441 |
+
PREFIX detection: <{self.DETECTION}>
|
| 442 |
+
PREFIX disease: <{self.DISEASE}>
|
| 443 |
+
PREFIX rdfs: <{RDFS}>
|
| 444 |
+
|
| 445 |
+
SELECT ?disease ?diseaseLabel WHERE {{
|
| 446 |
+
<{detection_uri}> detection:hasDisease ?disease .
|
| 447 |
+
?disease rdfs:label ?diseaseLabel .
|
| 448 |
+
}}
|
| 449 |
+
"""
|
| 450 |
+
|
| 451 |
+
for row in self.graph.query(query):
|
| 452 |
+
semantic_info['diseases'].append({
|
| 453 |
+
'uri': str(row.disease),
|
| 454 |
+
'label': str(row.diseaseLabel)
|
| 455 |
+
})
|
| 456 |
+
|
| 457 |
+
# Query severity level
|
| 458 |
+
query = f"""
|
| 459 |
+
PREFIX detection: <{self.DETECTION}>
|
| 460 |
+
PREFIX agri: <{self.AGRI}>
|
| 461 |
+
PREFIX rdfs: <{RDFS}>
|
| 462 |
+
|
| 463 |
+
SELECT ?severityLevel ?severityLabel WHERE {{
|
| 464 |
+
<{detection_uri}> detection:hasSeverityLevel ?severityLevel .
|
| 465 |
+
?severityLevel rdfs:label ?severityLabel .
|
| 466 |
+
}}
|
| 467 |
+
"""
|
| 468 |
+
|
| 469 |
+
for row in self.graph.query(query):
|
| 470 |
+
semantic_info['severity_level'] = {
|
| 471 |
+
'uri': str(row.severityLevel),
|
| 472 |
+
'label': str(row.severityLabel)
|
| 473 |
+
}
|
| 474 |
+
break
|
| 475 |
+
|
| 476 |
+
# Query economic impact
|
| 477 |
+
query = f"""
|
| 478 |
+
PREFIX agri: <{self.AGRI}>
|
| 479 |
+
PREFIX rdfs: <{RDFS}>
|
| 480 |
+
|
| 481 |
+
SELECT ?impact ?impactLabel ?marketability WHERE {{
|
| 482 |
+
<{detection_uri}> agri:hasEconomicImpact ?impact .
|
| 483 |
+
?impact rdfs:label ?impactLabel .
|
| 484 |
+
?impact agri:marketabilityScore ?marketability .
|
| 485 |
+
}}
|
| 486 |
+
"""
|
| 487 |
+
|
| 488 |
+
for row in self.graph.query(query):
|
| 489 |
+
semantic_info['economic_impact'] = {
|
| 490 |
+
'uri': str(row.impact),
|
| 491 |
+
'label': str(row.impactLabel),
|
| 492 |
+
'marketability_score': float(row.marketability)
|
| 493 |
+
}
|
| 494 |
+
break
|
| 495 |
+
|
| 496 |
+
return semantic_info
|
| 497 |
+
|
| 498 |
+
def _get_ontology_inferences(self, detection_uri: URIRef) -> List[str]:
|
| 499 |
+
"""Get ontology-based inferences and recommendations"""
|
| 500 |
+
inferences = []
|
| 501 |
+
|
| 502 |
+
# Query for related information using SPARQL
|
| 503 |
+
query = f"""
|
| 504 |
+
PREFIX detection: <{self.DETECTION}>
|
| 505 |
+
PREFIX disease: <{self.DISEASE}>
|
| 506 |
+
PREFIX visual: <{self.VISUAL}>
|
| 507 |
+
PREFIX rdfs: <{RDFS}>
|
| 508 |
+
|
| 509 |
+
SELECT ?disease ?symptom ?symptomLabel WHERE {{
|
| 510 |
+
<{detection_uri}> detection:hasDisease ?disease .
|
| 511 |
+
?disease detection:hasSymptom ?symptom .
|
| 512 |
+
?symptom rdfs:label ?symptomLabel .
|
| 513 |
+
}}
|
| 514 |
+
"""
|
| 515 |
+
|
| 516 |
+
symptoms = []
|
| 517 |
+
for row in self.graph.query(query):
|
| 518 |
+
symptoms.append(str(row.symptomLabel))
|
| 519 |
+
|
| 520 |
+
if symptoms:
|
| 521 |
+
inferences.append(f"Detected visual symptoms: {', '.join(symptoms)}")
|
| 522 |
+
|
| 523 |
+
# Add treatment recommendations based on ontology
|
| 524 |
+
inferences.extend(self._get_treatment_recommendations(detection_uri))
|
| 525 |
+
|
| 526 |
+
return inferences
|
| 527 |
+
|
| 528 |
+
def _get_treatment_recommendations(self, detection_uri: URIRef) -> List[str]:
|
| 529 |
+
"""Get treatment recommendations based on detected diseases"""
|
| 530 |
+
recommendations = []
|
| 531 |
+
|
| 532 |
+
# Query detected diseases
|
| 533 |
+
query = f"""
|
| 534 |
+
PREFIX detection: <{self.DETECTION}>
|
| 535 |
+
PREFIX disease: <{self.DISEASE}>
|
| 536 |
+
PREFIX rdfs: <{RDFS}>
|
| 537 |
+
|
| 538 |
+
SELECT ?disease ?diseaseLabel WHERE {{
|
| 539 |
+
<{detection_uri}> detection:hasDisease ?disease .
|
| 540 |
+
?disease rdfs:label ?diseaseLabel .
|
| 541 |
+
}}
|
| 542 |
+
"""
|
| 543 |
+
|
| 544 |
+
disease_labels = []
|
| 545 |
+
for row in self.graph.query(query):
|
| 546 |
+
disease_labels.append(str(row.diseaseLabel))
|
| 547 |
+
|
| 548 |
+
# Provide recommendations based on diseases
|
| 549 |
+
if "Alternaria" in disease_labels:
|
| 550 |
+
recommendations.append("Apply copper-based fungicide for Alternaria control")
|
| 551 |
+
recommendations.append("Improve air circulation and reduce humidity")
|
| 552 |
+
|
| 553 |
+
if "Anthracnose" in disease_labels:
|
| 554 |
+
recommendations.append("Use preventive fungicide sprays for Anthracnose")
|
| 555 |
+
recommendations.append("Remove infected fruits and debris")
|
| 556 |
+
|
| 557 |
+
if "Aspergillus" in disease_labels:
|
| 558 |
+
recommendations.append("Improve storage conditions to prevent Aspergillus")
|
| 559 |
+
recommendations.append("Reduce moisture and temperature in storage")
|
| 560 |
+
|
| 561 |
+
if "Lasiodiplodia" in disease_labels:
|
| 562 |
+
recommendations.append("Improve field sanitation for Lasiodiplodia control")
|
| 563 |
+
recommendations.append("Avoid mechanical damage during harvest")
|
| 564 |
+
|
| 565 |
+
return recommendations
|
| 566 |
+
|
| 567 |
+
def export_ontology(self, output_path: str, format: str = "turtle"):
|
| 568 |
+
"""Export the ontology to a file"""
|
| 569 |
+
print(f"Exporting ontology to {output_path} in {format} format...")
|
| 570 |
+
|
| 571 |
+
with open(output_path, 'w', encoding='utf-8') as f:
|
| 572 |
+
f.write(self.graph.serialize(format=format))
|
| 573 |
+
|
| 574 |
+
print(f"Ontology exported successfully!")
|
| 575 |
+
|
| 576 |
+
def get_ontology_statistics(self) -> Dict[str, int]:
|
| 577 |
+
"""Get statistics about the ontology"""
|
| 578 |
+
stats = {
|
| 579 |
+
'total_triples': len(self.graph),
|
| 580 |
+
'classes': len(list(self.graph.subjects(RDF.type, OWL.Class))),
|
| 581 |
+
'object_properties': len(list(self.graph.subjects(RDF.type, OWL.ObjectProperty))),
|
| 582 |
+
'datatype_properties': len(list(self.graph.subjects(RDF.type, OWL.DatatypeProperty))),
|
| 583 |
+
'individuals': len(list(self.graph.subjects(RDF.type, self.DETECTION.DetectionResult))),
|
| 584 |
+
}
|
| 585 |
+
return stats
|
| 586 |
+
|
| 587 |
+
def query_ontology(self, sparql_query: str) -> List[Dict]:
|
| 588 |
+
"""Execute a SPARQL query on the ontology"""
|
| 589 |
+
results = []
|
| 590 |
+
for row in self.graph.query(sparql_query):
|
| 591 |
+
result_dict = {}
|
| 592 |
+
for var in row.labels:
|
| 593 |
+
result_dict[var] = str(row[var])
|
| 594 |
+
results.append(result_dict)
|
| 595 |
+
return results
|
| 596 |
+
|
| 597 |
+
def demonstrate_semantic_detection():
|
| 598 |
+
"""Demonstrate the semantic mango disease detection system"""
|
| 599 |
+
print("=" * 80)
|
| 600 |
+
print("SEMANTIC WEB ONTOLOGY FOR MANGO DISEASE DETECTION")
|
| 601 |
+
print("=" * 80)
|
| 602 |
+
print("Features:")
|
| 603 |
+
print("- OWL-RL reasoning for enhanced disease inference")
|
| 604 |
+
print("- Semantic annotation of detection results")
|
| 605 |
+
print("- Economic impact assessment")
|
| 606 |
+
print("- Treatment recommendations")
|
| 607 |
+
print("- SPARQL queries for knowledge discovery")
|
| 608 |
+
print()
|
| 609 |
+
|
| 610 |
+
# Initialize semantic system
|
| 611 |
+
print("Initializing semantic ontology manager...")
|
| 612 |
+
ontology_manager = MangoOntologyManager()
|
| 613 |
+
|
| 614 |
+
# Show ontology statistics
|
| 615 |
+
stats = ontology_manager.get_ontology_statistics()
|
| 616 |
+
print(f"Ontology Statistics:")
|
| 617 |
+
for key, value in stats.items():
|
| 618 |
+
print(f" {key.replace('_', ' ').title()}: {value}")
|
| 619 |
+
print()
|
| 620 |
+
|
| 621 |
+
return ontology_manager
|
| 622 |
+
|
| 623 |
+
if __name__ == "__main__":
|
| 624 |
+
# Demonstrate the system
|
| 625 |
demonstrate_semantic_detection()
|