Export requirements.txt from poetry

README.md

@@ -17,4 +17,10 @@ Visualize attention pattern on 3D protein structures
 poetry install
 
 poetry run streamlit run hexviz/streamlit/Attention_On_Structure.py
+```
+
+## Export dependcies from poetry
+Spaces [require](https://huggingface.co/docs/hub/spaces-dependencies#adding-your-own-dependencies) dependencies in a `requirements.txt` file. Export depencies from poetry's `pyproject.toml` file with:
+```shell
+poetry export -f requirements.txt --output requirements.txt --without-hashes
 ```

requirements.txt

@@ -0,0 +1,158 @@
+altair==4.2.2; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+anyio==3.6.2; python_full_version >= "3.6.2" and python_version >= "3.8"
+appnope==0.1.3; platform_system == "Darwin" and python_version >= "3.8" and sys_platform == "darwin"
+argon2-cffi-bindings==21.2.0; python_version >= "3.7"
+argon2-cffi==21.3.0; python_version >= "3.8"
+arrow==1.2.3; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+asttokens==2.2.1; python_version >= "3.8"
+attrs==22.2.0; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+backcall==0.2.0; python_version >= "3.8"
+beautifulsoup4==4.11.2; python_full_version >= "3.6.0" and python_version >= "3.7"
+biopython==1.81; python_version >= "3.7"
+bleach==6.0.0; python_version >= "3.7"
+blinker==1.5; python_version >= "3.7" and python_full_version < "3.0.0" or python_version >= "3.7" and python_full_version < "3.9.7" and python_full_version >= "3.5.0" or python_full_version > "3.9.7" and python_version >= "3.6"
+boto3==1.26.95; python_version >= "3.7"
+botocore==1.29.95; python_version >= "3.7"
+cachetools==5.3.0; python_version >= "3.7" and python_version < "4.0" and (python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7") and (python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.6")
+certifi==2022.12.7; python_version >= "3.7" and python_version < "4" and (python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7") and python_full_version >= "3.7.0"
+cffi==1.15.1; implementation_name == "pypy" and python_version >= "3.8"
+charset-normalizer==3.1.0; python_version >= "3.7" and python_version < "4" and (python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7") and python_full_version >= "3.7.0"
+click==8.1.3; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+cmake==3.26.0; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0"
+colorama==0.4.6; python_version >= "3.8" and python_full_version < "3.9.7" and platform_system == "Windows" and python_full_version >= "3.7.0" and sys_platform == "win32" or python_full_version > "3.9.7" and python_version >= "3.8" and platform_system == "Windows" and sys_platform == "win32"
+comm==0.1.2; python_version >= "3.8"
+debugpy==1.6.6; python_version >= "3.8"
+decorator==5.1.1; python_version >= "3.8" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.8"
+defusedxml==0.7.1; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.7"
+deprecation==2.1.0; python_version >= "3.7"
+entrypoints==0.4; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+executing==1.2.0; python_version >= "3.8"
+fastjsonschema==2.16.3; python_version >= "3.7"
+filelock==3.10.0; python_version >= "3.7" and python_full_version >= "3.8.0" and platform_system == "Linux" and platform_machine == "x86_64"
+fqdn==1.5.1; python_version >= "3.7" and python_version < "4" and python_full_version < "3.9.7" or python_version >= "3.7" and python_version < "4" and python_full_version > "3.9.7"
+gitdb==4.0.10; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+gitpython==3.1.31; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+huggingface-hub==0.13.2; python_full_version >= "3.7.0"
+idna==3.4; python_version >= "3.8" and python_version < "4" and (python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7") and python_full_version >= "3.7.0" and (python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7")
+importlib-metadata==6.0.0; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+ipykernel==6.21.3; python_version >= "3.8"
+ipyspeck==0.6.1; python_version >= "3.6"
+ipython-genutils==0.2.0; python_version >= "3.7"
+ipython==8.11.0; python_version >= "3.8"
+ipywidgets==7.6.3; python_version >= "3.6"
+isoduration==20.11.0; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+jedi==0.18.2; python_version >= "3.8"
+jinja2==3.1.2; python_version >= "3.8" and python_full_version >= "3.8.0" and (python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7") and platform_system == "Linux" and platform_machine == "x86_64"
+jmespath==1.0.1; python_version >= "3.7"
+jsonpointer==2.3; python_version >= "3.7" and python_full_version < "3.0.0" or python_version >= "3.7" and python_full_version < "3.9.7" and python_full_version >= "3.4.0" or python_full_version > "3.9.7" and python_version >= "3.7"
+jsonschema==4.17.3; python_version >= "3.8" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.8"
+jupyter-client==8.0.3; python_full_version >= "3.7.0" and python_version >= "3.8"
+jupyter-core==5.2.0; python_full_version >= "3.7.0" and python_version >= "3.8"
+jupyter-events==0.6.3; python_version >= "3.8"
+jupyter-packaging==0.12.3; python_version >= "3.7"
+jupyter-server-terminals==0.4.4; python_version >= "3.8"
+jupyter-server==2.4.0; python_version >= "3.8"
+jupyterlab-pygments==0.2.2; python_version >= "3.7"
+jupyterlab-widgets==3.0.5; python_version >= "3.7"
+lit==15.0.7; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0"
+lmdb==1.4.0
+markdown-it-py==2.2.0; python_version >= "3.7" and python_full_version < "3.9.7" and python_full_version >= "3.7.0" or python_full_version > "3.9.7" and python_version >= "3.7"
+markupsafe==2.1.2; python_version >= "3.7" and python_full_version >= "3.8.0" and (python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7")
+matplotlib-inline==0.1.6; python_version >= "3.8"
+mdurl==0.1.2; python_version >= "3.7" and python_full_version < "3.9.7" and python_full_version >= "3.7.0" or python_full_version > "3.9.7" and python_version >= "3.7"
+mistune==2.0.5; python_version >= "3.7"
+mpmath==1.3.0; python_version >= "3.8" and python_full_version >= "3.8.0"
+nbclassic==0.5.3; python_version >= "3.7"
+nbclient==0.7.2; python_full_version >= "3.7.0" and python_version >= "3.7"
+nbconvert==7.2.10; python_version >= "3.8"
+nbformat==5.7.3; python_full_version >= "3.7.0" and python_version >= "3.8"
+nest-asyncio==1.5.6; python_version >= "3.8"
+networkx==3.0; python_version >= "3.8" and python_full_version >= "3.8.0" and platform_system == "Linux" and platform_machine == "x86_64"
+notebook-shim==0.2.2; python_version >= "3.7"
+notebook==6.5.3; python_version >= "3.7"
+numpy==1.24.2; python_version >= "3.11" and python_full_version < "3.9.7" and python_full_version >= "3.7.0" or python_full_version > "3.9.7" and python_version >= "3.11"
+nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_version >= "3"
+nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_version >= "3"
+nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_version >= "3"
+nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_version >= "3"
+nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_version >= "3"
+nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_version >= "3"
+nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_version >= "3"
+nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_version >= "3"
+nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_version >= "3"
+nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_version >= "3"
+nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0" and python_version >= "3"
+packaging==23.0; python_version >= "3.8" and python_full_version < "3.9.7" and python_full_version >= "3.7.0" or python_full_version > "3.9.7" and python_version >= "3.8"
+pandas==1.5.3; python_version >= "3.8" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.8"
+pandocfilters==1.5.0; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.7"
+parso==0.8.3; python_version >= "3.8"
+pexpect==4.8.0; sys_platform != "win32" and python_version >= "3.8"
+pickleshare==0.7.5; python_version >= "3.8"
+pillow==9.4.0; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+platformdirs==3.1.1; python_version >= "3.8"
+prometheus-client==0.16.0; python_version >= "3.8"
+prompt-toolkit==3.0.38; python_full_version >= "3.7.0" and python_version >= "3.8"
+protobuf==3.20.3; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+psutil==5.9.4; python_version >= "3.8" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.8"
+ptyprocess==0.7.0; sys_platform != "win32" and python_version >= "3.8" and os_name != "nt"
+pure-eval==0.2.2; python_version >= "3.8"
+py3dmol==2.0.1.post1; python_version >= "3.6"
+pyarrow==11.0.0; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+pycparser==2.21; python_version >= "3.8" and python_full_version < "3.0.0" and implementation_name == "pypy" or implementation_name == "pypy" and python_version >= "3.8" and python_full_version >= "3.4.0"
+pydeck==0.8.0; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+pygments==2.14.0; python_version >= "3.8" and python_full_version < "3.9.7" and python_full_version >= "3.7.0" or python_full_version > "3.9.7" and python_version >= "3.8"
+pympler==1.0.1; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.6"
+pyrsistent==0.19.3; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+python-dateutil==2.8.2; python_version >= "3.8" and python_full_version < "3.0.0" or python_version >= "3.8" and python_full_version < "3.9.7" and python_full_version >= "3.3.0" or python_full_version > "3.9.7" and python_version >= "3.8"
+python-json-logger==2.0.7; python_version >= "3.8"
+pytz-deprecation-shim==0.1.0.post0; python_version >= "3.7" and python_full_version < "3.0.0" or python_version >= "3.7" and python_full_version < "3.9.7" and python_full_version >= "3.6.0" or python_full_version > "3.9.7" and python_version >= "3.6"
+pytz==2022.7.1; python_version >= "3.8" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.8"
+pywin32==305; sys_platform == "win32" and platform_python_implementation != "PyPy" and python_version >= "3.8"
+pywinpty==2.0.10; os_name == "nt" and python_version >= "3.8"
+pyyaml==6.0; python_version >= "3.8" and python_full_version >= "3.7.0"
+pyzmq==25.0.1; python_version >= "3.8"
+regex==2022.10.31; python_version >= "3.6" and python_full_version >= "3.7.0"
+requests==2.28.2; python_version >= "3.7" and python_version < "4" and (python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7") and python_full_version >= "3.7.0" and (python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.6")
+rfc3339-validator==0.1.4; python_version >= "3.8" and python_full_version < "3.0.0" or python_version >= "3.8" and python_full_version < "3.9.7" and python_full_version >= "3.5.0" or python_full_version > "3.9.7" and python_version >= "3.8"
+rfc3986-validator==0.1.1; python_version >= "3.8" and python_full_version < "3.0.0" or python_version >= "3.8" and python_full_version < "3.9.7" and python_full_version >= "3.5.0" or python_full_version > "3.9.7" and python_version >= "3.8"
+rich==13.3.2; python_version >= "3.7" and python_full_version < "3.9.7" and python_full_version >= "3.7.0" or python_full_version > "3.9.7" and python_version >= "3.6"
+s3transfer==0.6.0; python_version >= "3.7"
+scipy==1.9.3; python_version >= "3.8"
+semver==2.13.0; python_version >= "3.7" and python_full_version < "3.0.0" or python_version >= "3.7" and python_full_version < "3.9.7" and python_full_version >= "3.4.0" or python_full_version > "3.9.7" and python_version >= "3.6"
+send2trash==1.8.0; python_version >= "3.8"
+sentencepiece==0.1.97
+six==1.16.0; python_version >= "3.8" and python_full_version < "3.0.0" or python_version >= "3.8" and python_full_version < "3.9.7" and python_full_version >= "3.5.0" or python_full_version > "3.9.7" and python_version >= "3.8"
+smmap==5.0.0; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+sniffio==1.3.0; python_full_version >= "3.6.2" and python_version >= "3.8"
+soupsieve==2.4; python_full_version >= "3.6.0" and python_version >= "3.7"
+stack-data==0.6.2; python_version >= "3.8"
+stmol==0.0.9; python_version >= "3.6"
+streamlit==1.20.0; (python_version >= "3.7" and python_full_version < "3.9.7") or (python_full_version > "3.9.7")
+sympy==1.11.1; python_version >= "3.8" and python_full_version >= "3.8.0" and platform_system == "Linux" and platform_machine == "x86_64"
+tape-proteins==0.5
+tensorboardx==2.6
+terminado==0.17.1; python_version >= "3.8"
+tinycss2==1.2.1; python_version >= "3.7"
+tokenizers==0.13.2; python_full_version >= "3.7.0"
+toml==0.10.2; python_version >= "3.7" and python_full_version < "3.0.0" or python_version >= "3.7" and python_full_version < "3.9.7" and python_full_version >= "3.3.0" or python_full_version > "3.9.7" and python_version >= "3.6"
+tomlkit==0.11.6; python_version >= "3.7"
+toolz==0.12.0; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+torch==2.0.0; python_full_version >= "3.8.0"
+tornado==6.2; python_version >= "3.8" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.8"
+tqdm==4.65.0; python_version >= "3.7" and python_full_version >= "3.7.0"
+traitlets==5.9.0; python_full_version >= "3.7.0" and python_version >= "3.8"
+transformers==4.27.1; python_full_version >= "3.7.0"
+triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" and python_full_version >= "3.8.0"
+typing-extensions==4.5.0; python_version >= "3.7" and python_full_version < "3.9.7" and python_full_version >= "3.8.0" and platform_system == "Linux" and platform_machine == "x86_64" or python_full_version > "3.9.7" and python_version >= "3.7" and platform_system == "Linux" and platform_machine == "x86_64"
+tzdata==2022.7; python_version >= "3.7" and python_full_version < "3.0.0" and platform_system == "Windows" or python_version >= "3.7" and python_full_version < "3.9.7" and platform_system == "Windows" and python_full_version >= "3.6.0" or python_full_version > "3.9.7" and python_version >= "3.6" and platform_system == "Windows"
+tzlocal==4.2; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.6"
+uri-template==1.2.0; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+urllib3==1.26.15; python_version >= "3.7" and python_version < "4" and (python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7") and python_full_version >= "3.7.0" and (python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.6.0" and python_version >= "3.7")
+validators==0.20.0; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.6"
+watchdog==2.3.1; python_version >= "3.7" and python_full_version < "3.9.7" and platform_system != "Darwin" or python_full_version > "3.9.7" and platform_system != "Darwin" and python_version >= "3.6"
+wcwidth==0.2.6; python_full_version >= "3.7.0" and python_version >= "3.8"
+webcolors==1.12; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"
+webencodings==0.5.1; python_version >= "3.7"
+websocket-client==1.5.1; python_version >= "3.8"
+widgetsnbextension==3.5.2; python_version >= "3.6"
+zipp==3.15.0; python_version >= "3.7" and python_full_version < "3.9.7" or python_full_version > "3.9.7" and python_version >= "3.7"