Rebrand to SciDER, fix subagent output display, disable Reasoning Bank for Streamlit

- Rebrand SciEvo to SciDER in streamlit client (app, docs, scripts)
- Replace rocket emoji with apple emoji for Full Workflow
- Persist and display intermediate state (subagent outputs) after rerun
- Fix Full Workflow to return aggregated intermediate state from all phases
- Disable Reasoning Bank when running workflows from Streamlit
- Rename scievo_uploads to scider_uploads, scievo-streamlit to scider-streamlit

Co-authored-by: Cursor <cursoragent@cursor.com>

scievo/workflows/full_workflow_with_ideation.py

@@ -86,6 +86,7 @@ class FullWorkflowWithIdeation(BaseModel):
     # Ideation results
     ideation_summary: str = ""
     ideation_papers: list[dict] = []
+    ideation_intermediate_state: list[dict] = []
     novelty_score: float | None = None
     novelty_feedback: str | None = None
 
@@ -232,6 +233,7 @@ class FullWorkflowWithIdeation(BaseModel):
             # Extract results
             self.ideation_summary = result_state.output_summary or ""
             self.ideation_papers = result_state.papers
+            self.ideation_intermediate_state = result_state.intermediate_state
             self.novelty_score = result_state.novelty_score
             self.novelty_feedback = result_state.novelty_feedback
 

streamlit-client/README.md

@@ -1,6 +1,6 @@
-# SciEvo Streamlit Chat Interface
+# SciDER Streamlit Chat Interface
 
-A ChatGPT-like web interface for running the complete SciEvo workflow with real-time progress tracking and intermediate output visualization.
+A ChatGPT-like web interface for running the complete SciDER workflow with real-time progress tracking and intermediate output visualization.
 
 ## Features
 
@@ -33,9 +33,9 @@ Or install streamlit directly:
 pip install streamlit
 ```
 
-### 2. Ensure SciEvo is Set Up
+### 2. Ensure SciDER is Set Up
 
-Make sure you've completed the main SciEvo setup from the parent directory:
+Make sure you've completed the main SciDER setup from the parent directory:
 
 ```bash
 cd ..
@@ -252,7 +252,7 @@ pip install streamlit
 
 ### Import Errors
 
-Ensure you're running from the correct directory and that the parent SciEvo package is accessible:
+Ensure you're running from the correct directory and that the parent SciDER package is accessible:
 
 ```bash
 cd streamlit-client
@@ -336,4 +336,4 @@ To improve the interface:
 
 ## License
 
-Same as parent SciEvo project.
+Same as parent SciDER project.

streamlit-client/README_DOCKER.md

@@ -1,6 +1,6 @@
-# Docker Setup for SciEvo Streamlit Client
+# Docker Setup for SciDER Streamlit Client
 
-This directory contains Docker configuration files for running the SciEvo Streamlit client in a containerized environment.
+This directory contains Docker configuration files for running the SciDER Streamlit client in a containerized environment.
 
 ## Quick Start
 
@@ -28,13 +28,13 @@ This directory contains Docker configuration files for running the SciEvo Stream
 1. **Build the image**:
    ```bash
    cd streamlit-client
-   docker build -t scievo-streamlit:latest -f Dockerfile ..
+   docker build -t scider-streamlit:latest -f Dockerfile ..
    ```
 
 2. **Run the container**:
    ```bash
    docker run -d \
-     --name scievo-streamlit \
+     --name scider-streamlit \
      -p 8501:8501 \
      -v $(pwd)/case-study-memory:/app/streamlit-client/case-study-memory \
      -v $(pwd)/workspace:/app/streamlit-client/workspace \
@@ -42,7 +42,7 @@ This directory contains Docker configuration files for running the SciEvo Stream
      -v ../.env:/app/.env:ro \
      -e BRAIN_DIR=/app/streamlit-client/tmp_brain \
      -e WORKSPACE_PATH=/app/streamlit-client/workspace \
-     scievo-streamlit:latest
+     scider-streamlit:latest
    ```
 
 ## Environment Variables
@@ -80,7 +80,7 @@ ports:
 
 Make sure your `.env` file is correctly mounted and contains valid API keys. Check the container logs:
 ```bash
-docker logs scievo-streamlit
+docker logs scider-streamlit
 ```
 
 ### Permission issues

streamlit-client/app.py

@@ -26,7 +26,7 @@ from scievo.workflows.data_workflow import DataWorkflow
 from scievo.workflows.experiment_workflow import ExperimentWorkflow
 from scievo.workflows.full_workflow_with_ideation import FullWorkflowWithIdeation
 
-st.set_page_config(page_title="SciEvo Chat", layout="centered")
+st.set_page_config(page_title="SciDER Chat", layout="centered")
 
 st.markdown(
     """
@@ -212,12 +212,32 @@ def run_full(cfg):
         max_revisions=5,
     )
     w.run()
-    return w.final_summary or "Workflow finished", []
+
+    # Aggregate intermediate state from all phases for subagent output display
+    aggregated = []
+    for item in w.ideation_intermediate_state:
+        aggregated.append({
+            "node_name": f"ideation/{item.get('node_name', 'unknown')}",
+            "output": item.get("output", ""),
+        })
+    if w._data_workflow:
+        for item in getattr(w._data_workflow, "data_agent_intermediate_state", []) or []:
+            aggregated.append({
+                "node_name": f"data/{item.get('node_name', 'unknown')}",
+                "output": item.get("output", ""),
+            })
+    if w._experiment_workflow:
+        for item in getattr(w._experiment_workflow, "experiment_agent_intermediate_state", []) or []:
+            aggregated.append({
+                "node_name": f"experiment/{item.get('node_name', 'unknown')}",
+                "output": item.get("output", ""),
+            })
+    return w.final_summary or "Workflow finished", aggregated
 
 
 def get_upload_temp_dir() -> Path:
     """Return temp directory for uploaded files. Clean old dirs on startup."""
-    base = Path(tempfile.gettempdir()) / "scievo_uploads"
+    base = Path(tempfile.gettempdir()) / "scider_uploads"
     base.mkdir(parents=True, exist_ok=True)
     # Clean dirs older than 1 hour (handles closed sessions)
     now = time.time()
@@ -262,11 +282,11 @@ def find_data_analysis_file(extract_dir: Path) -> Path | None:
 
 
 def _rm_upload_root(p: Path):
-    """Remove the scievo_uploads session dir (go up to find it)."""
+    """Remove the scider_uploads session dir (go up to find it)."""
     cur = Path(p).resolve().parent if Path(p).resolve().is_file() else Path(p).resolve()
     while cur != cur.parent:
         parent = cur.parent
-        if parent.name == "scievo_uploads":
+        if parent.name == "scider_uploads":
             try:
                 shutil.rmtree(cur)
             except OSError:
@@ -344,9 +364,9 @@ if "default_model" not in st.session_state:
     )
 
 if not st.session_state.api_key:
-    st.title("SciEvo Research Assistant")
+    st.title("SciDER Research Assistant")
     st.warning("API Key Required")
-    st.markdown("Please provide API keys to use the SciEvo Research Assistant.")
+    st.markdown("Please provide API keys to use the SciDER Research Assistant.")
 
     # Model provider selection
     col1, col2 = st.columns(2)
@@ -396,7 +416,7 @@ if not st.session_state.api_key:
 
 col_title, col_reset = st.columns([5, 1])
 with col_title:
-    st.title("SciEvo Research Assistant")
+    st.title("SciDER Research Assistant")
 with col_reset:
     if st.button("🔄 Reset", help="Clear all chat history", type="secondary"):
         cleanup_uploaded_data()
@@ -464,7 +484,7 @@ if "default_workspace_path" not in st.session_state:
     st.session_state.default_workspace_path = Path.cwd() / "workspace"
 # If workspace_path points to expired temp upload dir, restore to default
 _ws = st.session_state.workspace_path
-if isinstance(_ws, (str, Path)) and "scievo_uploads" in str(_ws) and not Path(_ws).exists():
+if isinstance(_ws, (str, Path)) and "scider_uploads" in str(_ws) and not Path(_ws).exists():
     cleanup_uploaded_data()
 
 if "selected_workflow" not in st.session_state:
@@ -490,7 +510,7 @@ with col3:
         st.rerun()
 
 with col4:
-    if st.button("🚀 Full Workflow", use_container_width=True, key="btn_full"):
+    if st.button("🍎 Full Workflow", use_container_width=True, key="btn_full"):
         st.session_state.selected_workflow = "full"
         st.rerun()
 
@@ -499,6 +519,9 @@ st.divider()
 for m in st.session_state.messages:
     with st.chat_message(m["role"]):
         st.markdown(m["content"])
+        # Render subagent intermediate states if persisted (survives st.rerun)
+        if m.get("intermediate_state"):
+            render_intermediate_state(m["intermediate_state"])
 
 # Workflow input forms
 workflow_config = None
@@ -625,7 +648,7 @@ elif st.session_state.selected_workflow == "experiment":
 
 elif st.session_state.selected_workflow == "full":
     with st.form("full_form", clear_on_submit=True):
-        st.markdown("### 🚀 Full Workflow")
+        st.markdown("### 🍎 Full Workflow")
         topic = st.text_input("Research Topic", placeholder="Enter your research topic...")
         st.caption("Data (for Data Analysis): upload zip or enter path")
         uploaded_full_zip = st.file_uploader(
@@ -733,7 +756,10 @@ if workflow_config:
         loading_placeholder.empty()
         stream_markdown(resp)
         render_intermediate_state(intermediate_state)
-        st.session_state.messages.append({"role": "assistant", "content": resp})
+        msg = {"role": "assistant", "content": resp}
+        if intermediate_state:
+            msg["intermediate_state"] = intermediate_state
+        st.session_state.messages.append(msg)
 
         metadata = {
             "workflow_type": workflow_config["type"],
@@ -813,7 +839,10 @@ if prompt := st.chat_input("Ask a question or select a workflow above"):
         loading_placeholder.empty()
         stream_markdown(resp)
         render_intermediate_state(intermediate_state)
-        st.session_state.messages.append({"role": "assistant", "content": resp})
+        msg = {"role": "assistant", "content": resp}
+        if intermediate_state:
+            msg["intermediate_state"] = intermediate_state
+        st.session_state.messages.append(msg)
 
         memo_dir = save_chat_history(
             st.session_state.messages, workflow_type="ideation", metadata={"query": prompt}

streamlit-client/display_components.py

@@ -124,7 +124,7 @@ def display_progress_updates(updates: list[ProgressUpdate]):
 
             # Status icon
             status_icons = {
-                "started": "🚀",
+                "started": "🍎",
                 "progress": "⏳",
                 "completed": "✅",
                 "error": "❌",

streamlit-client/docker-compose.yml

@@ -5,7 +5,7 @@ services:
     build:
       context: ..
       dockerfile: streamlit-client/Dockerfile
-    container_name: scievo-streamlit
+    container_name: scider-streamlit
     ports:
       - "8501:8501"
     volumes:

streamlit-client/example_config.yaml

@@ -1,4 +1,4 @@
-# Example Configuration for SciEvo Workflows
+# Example Configuration for SciDER Workflows
 # Copy and modify these settings as needed
 
 # ==================== Example 1: Ideation Only ====================

streamlit-client/run.bat

@@ -1,5 +1,5 @@
 @echo off
-REM Quick start script for SciEvo Streamlit Interface (Windows)
+REM Quick start script for SciDER Streamlit Interface (Windows)
 
 REM Check if streamlit is installed
 where streamlit >nul 2>nul
@@ -16,7 +16,7 @@ if not exist "..\\.env" (
     pause
 )
 
-echo Starting SciEvo Streamlit Interface...
+echo Starting SciDER Streamlit Interface...
 echo.
 echo Choose version:
 echo 1) Enhanced (recommended) - Real-time progress tracking

streamlit-client/run.sh

@@ -1,5 +1,5 @@
 #!/bin/bash
-# Quick start script for SciEvo Streamlit Interface
+# Quick start script for SciDER Streamlit Interface
 
 # Check if streamlit is installed
 if ! command -v streamlit &> /dev/null
@@ -16,7 +16,7 @@ if [ ! -f "../.env" ]; then
     read -p "Press enter to continue anyway or Ctrl+C to exit..."
 fi
 
-echo "🚀 Starting SciEvo Streamlit Interface..."
+echo "🍎 Starting SciDER Streamlit Interface..."
 echo ""
 echo "Choose version:"
 echo "1) Enhanced (recommended) - Real-time progress tracking"

streamlit-client/test_setup.py

@@ -1,6 +1,6 @@
 #!/usr/bin/env python3
 """
-Test Setup Script for SciEvo Streamlit Interface
+Test Setup Script for SciDER Streamlit Interface
 
 This script validates that all dependencies and configurations are correct.
 """
@@ -28,9 +28,9 @@ def test_imports():
     try:
         from scievo.workflows.full_workflow_with_ideation import FullWorkflowWithIdeation
 
-        print("  ✅ SciEvo workflow imported successfully")
+        print("  ✅ SciDER workflow imported successfully")
     except ImportError as e:
-        print(f"  ❌ SciEvo import failed: {e}")
+        print(f"  ❌ SciDER import failed: {e}")
         print("     Fix: Ensure parent directory is set up correctly")
         return False
 
@@ -38,9 +38,9 @@ def test_imports():
         from scievo.core.brain import Brain
         from scievo.core.llms import ModelRegistry
 
-        print("  ✅ SciEvo core modules imported successfully")
+        print("  ✅ SciDER core modules imported successfully")
     except ImportError as e:
-        print(f"  ❌ SciEvo core import failed: {e}")
+        print(f"  ❌ SciDER core import failed: {e}")
         return False
 
     return True
@@ -129,7 +129,7 @@ def test_streamlit_files():
 def main():
     """Run all tests."""
     print("=" * 60)
-    print("SciEvo Streamlit Interface - Setup Validation")
+    print("SciDER Streamlit Interface - Setup Validation")
     print("=" * 60)
 
     tests = [