ALYYAN commited on
Commit
2808465
·
unverified ·
1 Parent(s): 33f2535

Update app.py

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Files changed (1) hide show
  1. app.py +43 -66
app.py CHANGED
@@ -1,9 +1,6 @@
1
- # app.py (Definitive Final Version with Syntax Fix)
2
-
3
  import gradio as gr
4
  from pathlib import Path
5
  import asyncio
6
- from PIL import Image
7
 
8
  # Import backend components
9
  from app.prediction import PredictionPipeline
@@ -14,45 +11,26 @@ prediction_pipeline = PredictionPipeline()
14
  SAMPLE_IMAGE_DIR = Path("sample_images")
15
  try:
16
  if SAMPLE_IMAGE_DIR.is_dir():
17
- SAMPLE_IMAGES = [str(p) for p in sorted(list(SAMPLE_IMAGE_DIR.glob('*/*.jpeg')))]
 
18
  else: raise FileNotFoundError
19
  except FileNotFoundError:
20
- print("Warning: 'sample_images' directory not found."); SAMPLE_IMAGES = []
21
 
22
  # --- Core Logic Functions (Unchanged) ---
23
- async def process_analysis(patient_name, patient_age, image_list, is_sample=False):
24
- if not is_sample and (not patient_name or patient_age is None):
25
- raise gr.Error("Patient Name and Age are required.")
26
- if not image_list:
27
- raise gr.Error("At least one image is required.")
28
-
29
  result = prediction_pipeline.predict(image_list)
30
- if "error" in result:
31
- raise gr.Error(result.get("details", result["error"]))
32
-
33
- final_pred = result["final_prediction"]
34
- final_conf = result["final_confidence"]
35
-
36
- if not is_sample:
37
- await add_patient_record(str(patient_name), int(patient_age), final_pred, final_conf)
38
-
39
- confidences = {"NORMAL": 0.0, "PNEUMONIA": 0.0}
40
- confidences[final_pred] = final_conf
41
- confidences["NORMAL" if final_pred == "PNEUMONIA" else "PNEUMONIA"] = 1 - final_conf
42
-
43
- return [
44
- gr.update(visible=False),
45
- gr.update(visible=True),
46
- gr.update(value=result["watermarked_images"]),
47
- gr.update(value=confidences)
48
- ]
49
-
50
  async def refresh_history_table():
51
  records = await get_all_records()
52
- data_for_df = []
53
- if records:
54
- data_for_df = [[r.get('name'), r.get('age'), r.get('prediction_result'), f"{r.get('confidence_score', 0):.2%}", r.get('timestamp').strftime('%Y-%m-%d %H:%M')] for r in records]
55
- return gr.update(value=data_for_df)
56
 
57
  # --- Gradio UI Definition ---
58
  css = """
@@ -66,10 +44,10 @@ css = """
66
  #main_container { gap: 2rem; max-width: 900px; margin: 0 auto; }
67
  #results_gallery .gallery-item { padding: 0.25rem !important; background-color: #374151; border: 1px solid #374151 !important; }
68
  #bottom_controls { max-width: 500px; margin: 2.5rem auto 1rem auto; }
 
69
  """
70
  with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue"), css=css, title="Pneumonia Detection AI") as demo:
71
 
72
- # --- UI Layout (Unchanged) ---
73
  with gr.Column() as main_app:
74
  with gr.Column(elem_id="app_header"):
75
  gr.Markdown("# 🩺 Pneumonia Detection AI", elem_id="app_title")
@@ -90,9 +68,24 @@ with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue")
90
  with gr.Row():
91
  submit_analysis_btn = gr.Button("Analyze Images", variant="primary")
92
  cancel_btn = gr.Button("Cancel", variant="stop")
 
 
93
  with gr.Column(elem_id="bottom_controls"):
94
  with gr.Accordion("About this Tool", open=False):
95
- gr.Markdown("...") # Professional description here
 
 
 
 
 
 
 
 
 
 
 
 
 
96
  with gr.Row():
97
  samples_btn = gr.Button("Try Sample Images")
98
  history_btn = gr.Button("View Patient History")
@@ -106,14 +99,21 @@ with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue")
106
 
107
  with gr.Column(visible=False) as samples_page:
108
  gr.Markdown("# 🖼️ Sample Image Library", elem_classes="app_title")
109
- gr.Markdown("Click an image to run an anonymous analysis.")
110
- sample_gallery = gr.Gallery(value=SAMPLE_IMAGES, label="Sample Images", columns=5, height=400, allow_preview=True, elem_id="sample_gallery")
111
- hidden_sample_analyze_btn = gr.Button("Analyze Sample", visible=False)
112
  back_to_main_btn_samp = gr.Button("⬅️ Back to Main App")
 
 
 
 
 
 
 
 
 
 
 
113
 
114
- # --- Event Handling Logic ---
115
-
116
- # ... (upload, modal, start over handlers are correct)
117
  def show_patient_info(files): return gr.update(visible=True) if files else gr.update(visible=False)
118
  image_input.upload(fn=show_patient_info, inputs=image_input, outputs=patient_info_modal)
119
  async def submit_and_hide_modal(name, age, files):
@@ -121,30 +121,7 @@ with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue")
121
  submit_analysis_btn.click(fn=submit_and_hide_modal, inputs=[patient_name_modal, patient_age_modal, image_input], outputs=[uploader_column, results_column, result_images, result_label, patient_info_modal])
122
  cancel_btn.click(lambda: (gr.update(visible=False), None), None, [patient_info_modal, image_input])
123
  start_over_btn.click(fn=None, js="() => { window.location.reload(); }")
124
-
125
- # --- SAMPLE PAGE LOGIC (THE DEFINITIVE FIX) ---
126
- def on_sample_select(evt: gr.SelectData):
127
- return evt.value
128
-
129
- sample_gallery.select(
130
- fn=on_sample_select,
131
- inputs=None, # The event data is passed automatically
132
- outputs=[hidden_sample_analyze_btn]
133
- )
134
-
135
- async def handle_sample_analysis(selected_image_path: str):
136
- if not selected_image_path:
137
- raise gr.Error("Sample image path is missing.")
138
- analysis_results = await process_analysis("Sample User", 0, [selected_image_path], is_sample=True)
139
- return [gr.update(visible=True), gr.update(visible=False), *analysis_results]
140
-
141
- hidden_sample_analyze_btn.click(
142
- fn=handle_sample_analysis,
143
- inputs=[hidden_sample_analyze_btn],
144
- outputs=[main_app, samples_page, uploader_column, results_column, result_images, result_label]
145
- )
146
 
147
- # --- Page Navigation ---
148
  all_pages = [main_app, history_page, samples_page]
149
  async def show_history_page_and_refresh(): records_update = await refresh_history_table(); return [gr.update(visible=False), gr.update(visible=True), gr.update(visible=False), records_update]
150
  def show_samples_page(): return [gr.update(visible=False), gr.update(visible=False), gr.update(visible=True)]
 
 
 
1
  import gradio as gr
2
  from pathlib import Path
3
  import asyncio
 
4
 
5
  # Import backend components
6
  from app.prediction import PredictionPipeline
 
11
  SAMPLE_IMAGE_DIR = Path("sample_images")
12
  try:
13
  if SAMPLE_IMAGE_DIR.is_dir():
14
+ NORMAL_SAMPLES = [str(p) for p in sorted(list((SAMPLE_IMAGE_DIR / 'NORMAL').glob('*.jpeg')))]
15
+ PNEUMONIA_SAMPLES = [str(p) for p in sorted(list((SAMPLE_IMAGE_DIR / 'PNEUMONIA').glob('*.jpeg')))]
16
  else: raise FileNotFoundError
17
  except FileNotFoundError:
18
+ print("Warning: 'sample_images' directory not found."); NORMAL_SAMPLES, PNEUMONIA_SAMPLES = [], []
19
 
20
  # --- Core Logic Functions (Unchanged) ---
21
+ async def process_analysis(patient_name, patient_age, image_list):
22
+ if not patient_name or patient_age is None: raise gr.Error("Patient Name and Age are required.")
23
+ if not image_list: raise gr.Error("At least one image is required.")
 
 
 
24
  result = prediction_pipeline.predict(image_list)
25
+ if "error" in result: raise gr.Error(result.get("details", result["error"]))
26
+ final_pred, final_conf = result["final_prediction"], result["final_confidence"]
27
+ await add_patient_record(str(patient_name), int(patient_age), final_pred, final_conf)
28
+ confidences = {"NORMAL": 0.0, "PNEUMONIA": 0.0}; confidences[final_pred] = final_conf; confidences["NORMAL" if final_pred == "PNEUMONIA" else "PNEUMONIA"] = 1 - final_conf
29
+ return [gr.update(visible=False), gr.update(visible=True), gr.update(value=result["watermarked_images"]), gr.update(value=confidences)]
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
30
  async def refresh_history_table():
31
  records = await get_all_records()
32
+ data = [[r.get('name'), r.get('age'), r.get('prediction_result'), f"{r.get('confidence_score', 0):.2%}", r.get('timestamp').strftime('%Y-%m-%d %H:%M')] for r in records] if records else []
33
+ return gr.update(value=data)
 
 
34
 
35
  # --- Gradio UI Definition ---
36
  css = """
 
44
  #main_container { gap: 2rem; max-width: 900px; margin: 0 auto; }
45
  #results_gallery .gallery-item { padding: 0.25rem !important; background-color: #374151; border: 1px solid #374151 !important; }
46
  #bottom_controls { max-width: 500px; margin: 2.5rem auto 1rem auto; }
47
+ #bottom_controls .gr-accordion > .gr-block-label { text-align: center !important; display: block !important; }
48
  """
49
  with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue"), css=css, title="Pneumonia Detection AI") as demo:
50
 
 
51
  with gr.Column() as main_app:
52
  with gr.Column(elem_id="app_header"):
53
  gr.Markdown("# 🩺 Pneumonia Detection AI", elem_id="app_title")
 
68
  with gr.Row():
69
  submit_analysis_btn = gr.Button("Analyze Images", variant="primary")
70
  cancel_btn = gr.Button("Cancel", variant="stop")
71
+
72
+ # --- "About" Section (RESTORED) ---
73
  with gr.Column(elem_id="bottom_controls"):
74
  with gr.Accordion("About this Tool", open=False):
75
+ gr.Markdown(
76
+ """
77
+ ### MLOps-Powered Pneumonia Detection
78
+ This application demonstrates a complete, end-to-end MLOps pipeline for medical image classification. It leverages a state-of-the-art **Vision Transformer (ViT)** model, fine-tuned on a public dataset of chest X-ray images to distinguish between Normal and Pneumonia cases.
79
+
80
+ **Disclaimer:** This tool is for demonstration and educational purposes only and is **not a substitute for professional medical advice.**
81
+
82
+ ---
83
+
84
+ **Project Team:**
85
+ * **Alyyan Ahmed** - ML Engineer & Developer
86
+ * **Munim Akbar** - ML Engineer & Developer
87
+ """
88
+ )
89
  with gr.Row():
90
  samples_btn = gr.Button("Try Sample Images")
91
  history_btn = gr.Button("View Patient History")
 
99
 
100
  with gr.Column(visible=False) as samples_page:
101
  gr.Markdown("# 🖼️ Sample Image Library", elem_classes="app_title")
102
+ gr.Markdown("You can download these sample images to test the tool on the main page.")
 
 
103
  back_to_main_btn_samp = gr.Button("⬅️ Back to Main App")
104
+
105
+ with gr.Row():
106
+ with gr.Column():
107
+ gr.Markdown("### Normal Cases")
108
+ for img_path in NORMAL_SAMPLES:
109
+ gr.File(value=img_path, label=Path(img_path).name, interactive=False)
110
+
111
+ with gr.Column():
112
+ gr.Markdown("### Pneumonia Cases")
113
+ for img_path in PNEUMONIA_SAMPLES:
114
+ gr.File(value=img_path, label=Path(img_path).name, interactive=False)
115
 
116
+ # --- Event Handling Logic (Unchanged and Correct) ---
 
 
117
  def show_patient_info(files): return gr.update(visible=True) if files else gr.update(visible=False)
118
  image_input.upload(fn=show_patient_info, inputs=image_input, outputs=patient_info_modal)
119
  async def submit_and_hide_modal(name, age, files):
 
121
  submit_analysis_btn.click(fn=submit_and_hide_modal, inputs=[patient_name_modal, patient_age_modal, image_input], outputs=[uploader_column, results_column, result_images, result_label, patient_info_modal])
122
  cancel_btn.click(lambda: (gr.update(visible=False), None), None, [patient_info_modal, image_input])
123
  start_over_btn.click(fn=None, js="() => { window.location.reload(); }")
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
124
 
 
125
  all_pages = [main_app, history_page, samples_page]
126
  async def show_history_page_and_refresh(): records_update = await refresh_history_table(); return [gr.update(visible=False), gr.update(visible=True), gr.update(visible=False), records_update]
127
  def show_samples_page(): return [gr.update(visible=False), gr.update(visible=False), gr.update(visible=True)]