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Update app.py
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app.py
CHANGED
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@@ -1,9 +1,10 @@
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# app.py (Final
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import gradio as gr
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from pathlib import Path
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from huggingface_hub import snapshot_download
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import asyncio
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from app.prediction import PredictionPipeline
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from app.database import add_patient_record, get_all_records
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@@ -13,6 +14,7 @@ prediction_pipeline = PredictionPipeline()
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HF_DATASET_REPO = "ALYYAN/chest-xray-pneumonia-samples"
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try:
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SAMPLE_IMAGE_DIR = Path(snapshot_download(repo_id=HF_DATASET_REPO, repo_type="dataset"))
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SAMPLE_IMAGES = [str(p) for p in list(SAMPLE_IMAGE_DIR.glob('*/*.jpeg'))]
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except Exception as e:
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print(f"Could not download sample images: {e}")
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@@ -20,7 +22,7 @@ except Exception as e:
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# --- Core Logic (Async Functions) ---
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async def process_analysis(patient_name, patient_age, image_list, is_sample=False):
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if not is_sample and (not patient_name or patient_age is None
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raise gr.Error("Patient Name and Age are required.")
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if not image_list:
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raise gr.Error("At least one image is required.")
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@@ -39,12 +41,13 @@ async def process_analysis(patient_name, patient_age, image_list, is_sample=Fals
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confidences[final_pred] = final_conf
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confidences["NORMAL" if final_pred == "PNEUMONIA" else "PNEUMONIA"] = 1 - final_conf
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gr.update(visible=False), # uploader_column
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gr.update(visible=True), # results_column
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gr.update(value=result["watermarked_images"]), # result_images
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gr.update(value=confidences) # result_label
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async def refresh_history_table():
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records = await get_all_records()
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@@ -63,9 +66,7 @@ css = """
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#app_subtitle { font-size: 1.2rem !important; color: #9CA3AF !important; margin-bottom: 2rem; }
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/* --- Layout, Spacing, and Component Styling --- */
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#main_container { gap: 2rem; }
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#results_gallery {
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#results_gallery .gallery-item { height: 330px !important; max-height: 330px !important; padding: 0.25rem !important; background-color: #374151; border: 1px solid #374151 !important; }
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#results_gallery .gallery-item img { object-fit: contain !important; }
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#bottom_controls { max-width: 600px; margin: 2.5rem auto 1rem auto; }
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#bottom_controls .gr-accordion > .gr-block-label { text-align: center !important; display: block !important; }
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"""
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@@ -75,15 +76,18 @@ with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue")
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with gr.Column(elem_id="app_header"):
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gr.Markdown("# 🩺 Pneumonia Detection AI", elem_id="app_title")
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gr.Markdown("An AI-powered tool to assist in the diagnosis of pneumonia.", elem_id="app_subtitle")
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with gr.Row(elem_id="main_container"):
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with gr.Column(scale=1) as uploader_column:
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gr.Markdown("### Upload Patient X-Rays")
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image_input = gr.File(label="Upload up to 3 Images", file_count="multiple", file_types=["image"], type="filepath")
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with gr.Column(scale=2, visible=False) as results_column:
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gr.Markdown("### Analysis Results")
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result_images = gr.Gallery(label="Analyzed Images", columns=3, object_fit="contain", height=350, elem_id="results_gallery")
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result_label = gr.Label(label="Overall Prediction", num_top_classes=2)
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start_over_btn = gr.Button("Start New Analysis", variant="secondary")
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with gr.Group(visible=False) as patient_info_modal:
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gr.Markdown("## Enter Patient Details", elem_classes="text-center")
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patient_name_modal = gr.Textbox(label="Patient Name", placeholder="e.g., John Doe")
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@@ -91,84 +95,79 @@ with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue")
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with gr.Row():
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submit_analysis_btn = gr.Button("Analyze Images", variant="primary")
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cancel_btn = gr.Button("Cancel", variant="stop")
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with gr.Column(elem_id="bottom_controls"):
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with gr.Accordion("About this Tool", open=False):
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gr.Markdown(
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"""
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### MLOps-Powered Pneumonia Detection
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---
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**Key Features & Technologies:**
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* **Model:** Google's `vit-base-patch16-224-in21k`, fine-tuned for high accuracy.
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* **MLOps Pipeline:** Reproducible workflow managed by **DVC** for data versioning and **MLflow** for experiment tracking.
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* **Database:** Patient and prediction data is stored and managed in a **MongoDB** database for scalability.
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* **Frontend:** A responsive and interactive user interface built with **Gradio**.
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* **Deployment Ready:** The entire project is containerized and ready for deployment on platforms like Hugging Face Spaces.
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**Disclaimer:** This tool is for demonstration and educational purposes only and is **not a substitute for professional medical advice.**
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---
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**Project Team:**
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* **Alyyan Ahmed** - (roles)
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* **Munim Akbar** - (roles)
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"""
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)
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with gr.Row():
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samples_btn = gr.Button("Try Sample Images")
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history_btn = gr.Button("View Patient History")
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with gr.Column(visible=False) as history_page:
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gr.Markdown("# 📜 Patient Record History", elem_classes="app_title")
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with gr.Row():
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back_to_main_btn_hist = gr.Button("⬅️ Back to Main App")
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refresh_history_btn = gr.Button("Refresh History")
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history_df = gr.DataFrame(headers=["Name", "Age", "Prediction", "Confidence", "Date"], row_count=10, interactive=False)
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with gr.Column(visible=False) as samples_page:
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gr.Markdown("# 🖼️ Sample Image Library", elem_classes="app_title")
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gr.Markdown("Click an image to run an anonymous analysis.")
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back_to_main_btn_samp = gr.Button("⬅️ Back to Main App")
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sample_gallery = gr.Gallery(value=SAMPLE_IMAGES, label="Sample Images", columns=5, height=400)
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# --- Event Handling Logic ---
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def show_patient_info(files):
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return gr.update(visible=True) if files else gr.update(visible=False)
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image_input.upload(fn=show_patient_info, inputs=image_input, outputs=patient_info_modal)
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async def submit_and_hide_modal(name, age, files):
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analysis_results = await process_analysis(name, age, files)
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cancel_btn.click(lambda: (gr.update(visible=False), None), None, [patient_info_modal, image_input])
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start_over_btn.click(fn=None, js="() => { window.location.reload(); }")
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async def handle_sample_click(evt: gr.SelectData):
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analysis_results = await process_analysis("Sample User", 0, [selected_path], is_sample=True)
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return [
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gr.update(visible=True), # main_app
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gr.update(visible=False), # samples_page
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*analysis_results
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]
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sample_gallery.select(handle_sample_click, None, [main_app, samples_page, uploader_column, results_column, result_images, result_label])
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all_pages = [main_app, history_page, samples_page]
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async def show_history_page_and_refresh():
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records_update = await refresh_history_table()
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return [
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def show_samples_page():
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return [gr.update(visible=False), gr.update(visible=False), gr.update(visible=True)]
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def show_main_page():
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return [gr.update(visible=True), gr.update(visible=False), gr.update(visible=False)]
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history_btn.click(fn=show_history_page_and_refresh, outputs=all_pages + [history_df])
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samples_btn.click(fn=show_samples_page, outputs=all_pages)
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back_to_main_btn_hist.click(fn=show_main_page, outputs=all_pages)
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# --- Launch the App ---
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if __name__ == "__main__":
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demo.launch()
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# app.py (Final Version for Deployment)
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import gradio as gr
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from pathlib import Path
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from huggingface_hub import snapshot_download
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import asyncio
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import os
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from app.prediction import PredictionPipeline
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from app.database import add_patient_record, get_all_records
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HF_DATASET_REPO = "ALYYAN/chest-xray-pneumonia-samples"
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try:
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SAMPLE_IMAGE_DIR = Path(snapshot_download(repo_id=HF_DATASET_REPO, repo_type="dataset"))
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# The value for a Gallery should be a list of file paths
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SAMPLE_IMAGES = [str(p) for p in list(SAMPLE_IMAGE_DIR.glob('*/*.jpeg'))]
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except Exception as e:
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print(f"Could not download sample images: {e}")
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# --- Core Logic (Async Functions) ---
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async def process_analysis(patient_name, patient_age, image_list, is_sample=False):
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if not is_sample and (not patient_name or patient_age is None):
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raise gr.Error("Patient Name and Age are required.")
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if not image_list:
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raise gr.Error("At least one image is required.")
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confidences[final_pred] = final_conf
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confidences["NORMAL" if final_pred == "PNEUMONIA" else "PNEUMONIA"] = 1 - final_conf
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# Return updates for each component individually
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return (
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gr.update(visible=False), # uploader_column
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gr.update(visible=True), # results_column
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gr.update(value=result["watermarked_images"]), # result_images
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gr.update(value=confidences) # result_label
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)
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async def refresh_history_table():
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records = await get_all_records()
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#app_subtitle { font-size: 1.2rem !important; color: #9CA3AF !important; margin-bottom: 2rem; }
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/* --- Layout, Spacing, and Component Styling --- */
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#main_container { gap: 2rem; }
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#results_gallery .gallery-item { padding: 0.25rem !important; background-color: #374151; border: 1px solid #374151 !important; }
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#bottom_controls { max-width: 600px; margin: 2.5rem auto 1rem auto; }
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#bottom_controls .gr-accordion > .gr-block-label { text-align: center !important; display: block !important; }
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"""
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with gr.Column(elem_id="app_header"):
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gr.Markdown("# 🩺 Pneumonia Detection AI", elem_id="app_title")
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gr.Markdown("An AI-powered tool to assist in the diagnosis of pneumonia.", elem_id="app_subtitle")
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with gr.Row(elem_id="main_container"):
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with gr.Column(scale=1) as uploader_column:
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gr.Markdown("### Upload Patient X-Rays")
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image_input = gr.File(label="Upload up to 3 Images", file_count="multiple", file_types=["image"], type="filepath")
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with gr.Column(scale=2, visible=False) as results_column:
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gr.Markdown("### Analysis Results")
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result_images = gr.Gallery(label="Analyzed Images", columns=3, object_fit="contain", height=350, elem_id="results_gallery")
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result_label = gr.Label(label="Overall Prediction", num_top_classes=2)
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start_over_btn = gr.Button("Start New Analysis", variant="secondary")
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with gr.Group(visible=False) as patient_info_modal:
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gr.Markdown("## Enter Patient Details", elem_classes="text-center")
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patient_name_modal = gr.Textbox(label="Patient Name", placeholder="e.g., John Doe")
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with gr.Row():
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submit_analysis_btn = gr.Button("Analyze Images", variant="primary")
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cancel_btn = gr.Button("Cancel", variant="stop")
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with gr.Column(elem_id="bottom_controls"):
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with gr.Accordion("About this Tool", open=False):
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gr.Markdown(
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"""
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### MLOps-Powered Pneumonia Detection
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This application demonstrates a complete, end-to-end MLOps pipeline for medical image classification...
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(Your professional description here)
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---
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**Project Team:** Alyyan Ahmed & Munim Akbar
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"""
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)
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with gr.Row():
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samples_btn = gr.Button("Try Sample Images")
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history_btn = gr.Button("View Patient History")
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with gr.Column(visible=False) as history_page:
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gr.Markdown("# 📜 Patient Record History", elem_classes="app_title")
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with gr.Row():
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back_to_main_btn_hist = gr.Button("⬅️ Back to Main App")
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refresh_history_btn = gr.Button("Refresh History")
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history_df = gr.DataFrame(headers=["Name", "Age", "Prediction", "Confidence", "Date"], row_count=10, interactive=False)
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with gr.Column(visible=False) as samples_page:
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gr.Markdown("# 🖼️ Sample Image Library", elem_classes="app_title")
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gr.Markdown("Click an image to run an anonymous analysis.")
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back_to_main_btn_samp = gr.Button("⬅️ Back to Main App")
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# FIX: The value for a gallery is a list of file paths.
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sample_gallery = gr.Gallery(value=SAMPLE_IMAGES, label="Sample Images", columns=5, height=400)
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# --- Event Handling Logic ---
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def show_patient_info(files):
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return gr.update(visible=True) if files else gr.update(visible=False)
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image_input.upload(fn=show_patient_info, inputs=image_input, outputs=patient_info_modal)
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async def submit_and_hide_modal(name, age, files):
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analysis_results = await process_analysis(name, age, files)
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# Unpack the list of updates and add the modal update
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return [*analysis_results, gr.update(visible=False)]
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submit_analysis_btn.click(
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fn=submit_and_hide_modal,
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inputs=[patient_name_modal, patient_age_modal, image_input],
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outputs=[uploader_column, results_column, result_images, result_label, patient_info_modal]
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)
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cancel_btn.click(lambda: (gr.update(visible=False), None), None, [patient_info_modal, image_input])
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start_over_btn.click(fn=None, js="() => { window.location.reload(); }")
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async def handle_sample_click(evt: gr.SelectData):
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analysis_results = await process_analysis("Sample User", 0, [evt.value], is_sample=True)
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return [
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gr.update(visible=True), # main_app
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gr.update(visible=False), # samples_page
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*analysis_results
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]
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sample_gallery.select(handle_sample_click, None, [main_app, samples_page, uploader_column, results_column, result_images, result_label])
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all_pages = [main_app, history_page, samples_page]
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async def show_history_page_and_refresh():
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records_update = await refresh_history_table()
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return [
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gr.update(visible=False),
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gr.update(visible=True),
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gr.update(visible=False),
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records_update
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]
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def show_samples_page():
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return [gr.update(visible=False), gr.update(visible=False), gr.update(visible=True)]
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def show_main_page():
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return [gr.update(visible=True), gr.update(visible=False), gr.update(visible=False)]
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history_btn.click(fn=show_history_page_and_refresh, outputs=all_pages + [history_df])
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samples_btn.click(fn=show_samples_page, outputs=all_pages)
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back_to_main_btn_hist.click(fn=show_main_page, outputs=all_pages)
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# --- Launch the App ---
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if __name__ == "__main__":
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demo.launch()
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