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Update app.py
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app.py
CHANGED
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# app.py (
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import gradio as gr
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from pathlib import Path
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import asyncio
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# Import backend components
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from app.prediction import PredictionPipeline
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from app.database import add_patient_record, get_all_records
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# --- Initialization ---
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prediction_pipeline = PredictionPipeline()
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# --- Point to the locally cloned sample images directory from setup.sh ---
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SAMPLE_IMAGE_DIR = Path("sample_images")
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try:
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# Ensure the directory exists and has images before creating the list
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if SAMPLE_IMAGE_DIR.is_dir():
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SAMPLE_IMAGES = [str(p) for p in sorted(list(SAMPLE_IMAGE_DIR.glob('*/*.jpeg')))]
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if not SAMPLE_IMAGES:
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print("Warning: 'sample_images' directory found, but it's empty.")
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else:
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raise FileNotFoundError
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except FileNotFoundError:
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print("Warning: 'sample_images' directory not found. Please check setup.sh. Samples will be unavailable.")
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SAMPLE_IMAGES = []
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# --- Core Logic
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async def process_analysis(patient_name, patient_age, image_list, is_sample=False):
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"""
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Handles the core logic: validates input, gets prediction, saves to DB, and returns UI updates.
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"""
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if not is_sample and (not patient_name or patient_age is None):
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raise gr.Error("Patient Name and Age are required.")
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if not image_list:
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@@ -50,14 +45,13 @@ async def process_analysis(patient_name, patient_age, image_list, is_sample=Fals
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confidences["NORMAL" if final_pred == "PNEUMONIA" else "PNEUMONIA"] = 1 - final_conf
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return [
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gr.update(visible=False),
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gr.update(visible=True),
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gr.update(value=result["watermarked_images"]),
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gr.update(value=confidences)
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]
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async def refresh_history_table():
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"""Fetches records from the DB and formats them for the DataFrame."""
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records = await get_all_records()
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data_for_df = []
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if records:
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@@ -87,18 +81,15 @@ with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue")
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with gr.Column(elem_id="app_header"):
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gr.Markdown("# 🩺 Pneumonia Detection AI", elem_id="app_title")
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gr.Markdown("An AI-powered tool to assist in the diagnosis of pneumonia.", elem_id="app_subtitle")
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with gr.Row(elem_id="main_container"):
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with gr.Column(scale=1) as uploader_column:
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gr.Markdown("### Upload Patient X-Rays")
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image_input = gr.File(label="Upload up to 3 Images", file_count="multiple", file_types=["image"], type="filepath")
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with gr.Column(scale=2, visible=False) as results_column:
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gr.Markdown("### Analysis Results")
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result_images = gr.Gallery(label="Analyzed Images", columns=3, object_fit="contain", height=350, elem_id="results_gallery")
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result_label = gr.Label(label="Overall Prediction", num_top_classes=2)
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start_over_btn = gr.Button("Start New Analysis", variant="secondary")
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with gr.Group(visible=False) as patient_info_modal:
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gr.Markdown("## Enter Patient Details", elem_classes="text-center")
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patient_name_modal = gr.Textbox(label="Patient Name", placeholder="e.g., John Doe")
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@@ -106,7 +97,6 @@ with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue")
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with gr.Row():
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submit_analysis_btn = gr.Button("Analyze Images", variant="primary")
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cancel_btn = gr.Button("Cancel", variant="stop")
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with gr.Column(elem_id="bottom_controls"):
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with gr.Accordion("About this Tool", open=False):
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gr.Markdown(
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@@ -126,7 +116,7 @@ with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue")
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with gr.Row():
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samples_btn = gr.Button("Try Sample Images")
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history_btn = gr.Button("View Patient History")
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with gr.Column(visible=False) as history_page:
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gr.Markdown("# 📜 Patient Record History", elem_classes="app_title")
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with gr.Row():
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@@ -137,20 +127,15 @@ with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue")
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with gr.Column(visible=False) as samples_page:
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gr.Markdown("# 🖼️ Sample Image Library", elem_classes="app_title")
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gr.Markdown("Select up to 3 images by clicking on them, then click 'Analyze'.")
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sample_gallery = gr.Gallery(value=SAMPLE_IMAGES, label="Sample Images", columns=5, height=400, elem_id="sample_gallery")
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# This hidden textbox will store the list of selected file paths
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selected_samples_textbox = gr.Textbox(label="selected", visible=False, elem_id="selected_samples_textbox")
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with gr.Row():
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analyze_samples_btn = gr.Button("Analyze Selected Samples", variant="primary")
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back_to_main_btn_samp = gr.Button("⬅️ Back to Main App")
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# --- Event Handling Logic ---
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def show_patient_info(files):
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return gr.update(visible=True) if files else gr.update(visible=False)
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image_input.upload(fn=show_patient_info, inputs=image_input, outputs=patient_info_modal)
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async def submit_and_hide_modal(name, age, files):
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@@ -165,26 +150,26 @@ with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue")
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select_js = """
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(evt) => {
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const gallery = document.querySelector('#sample_gallery .grid-container');
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const
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const
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let
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const
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if (
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} else {
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if (
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} else {
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alert("
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}
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}
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return
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}
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"""
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sample_gallery.select(fn=None,
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async def handle_sample_analysis(selected_paths_str: str):
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selected_images = [path for path in selected_paths_str.split(',') if path]
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raise gr.Error("Please select at least one sample image to analyze.")
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analysis_results = await process_analysis("Sample User", 0, selected_images, is_sample=True)
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return [
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gr.update(visible=True), # main_app
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gr.update(visible=False), # samples_page
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*analysis_results
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]
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analyze_samples_btn.click(fn=handle_sample_analysis, inputs=[selected_samples_textbox], outputs=[main_app, samples_page, uploader_column, results_column, result_images, result_label])
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# --- Page Navigation ---
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all_pages = [main_app, history_page, samples_page]
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@@ -207,14 +193,13 @@ with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue")
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return [gr.update(visible=False), gr.update(visible=True), gr.update(visible=False), records_update]
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def show_samples_page():
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return [gr.update(visible=False), gr.update(visible=False), gr.update(visible=True), gr.update(value="")]
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def show_main_page():
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return [gr.update(visible=True), gr.update(visible=False), gr.update(visible=False)]
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history_btn.click(fn=show_history_page_and_refresh, outputs=all_pages + [history_df])
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samples_btn.click(fn=show_samples_page, outputs=all_pages
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back_to_main_btn_hist.click(fn=show_main_page, outputs=all_pages)
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back_to_main_btn_samp.click(fn=show_main_page, outputs=all_pages)
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# app.py (Definitive Final Version)
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import gradio as gr
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from pathlib import Path
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import asyncio
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from PIL import Image
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# Import backend components
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from app.prediction import PredictionPipeline
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from app.database import add_patient_record, get_all_records
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# --- Initialization ---
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prediction_pipeline = PredictionPipeline()
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# Point to the locally cloned sample images directory from setup.sh
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SAMPLE_IMAGE_DIR = Path("sample_images")
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try:
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if SAMPLE_IMAGE_DIR.is_dir():
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SAMPLE_IMAGES = [str(p) for p in sorted(list(SAMPLE_IMAGE_DIR.glob('*/*.jpeg')))]
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if not SAMPLE_IMAGES: raise FileNotFoundError
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else:
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raise FileNotFoundError
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except FileNotFoundError:
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print("Warning: 'sample_images' directory not found or empty. Please check setup.sh. Samples will be unavailable.")
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SAMPLE_IMAGES = []
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# --- Core Logic Functions ---
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async def process_analysis(patient_name, patient_age, image_list, is_sample=False):
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if not is_sample and (not patient_name or patient_age is None):
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raise gr.Error("Patient Name and Age are required.")
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if not image_list:
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confidences["NORMAL" if final_pred == "PNEUMONIA" else "PNEUMONIA"] = 1 - final_conf
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return [
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gr.update(visible=False),
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gr.update(visible=True),
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gr.update(value=result["watermarked_images"]),
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gr.update(value=confidences)
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]
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async def refresh_history_table():
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records = await get_all_records()
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data_for_df = []
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if records:
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with gr.Column(elem_id="app_header"):
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gr.Markdown("# 🩺 Pneumonia Detection AI", elem_id="app_title")
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gr.Markdown("An AI-powered tool to assist in the diagnosis of pneumonia.", elem_id="app_subtitle")
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with gr.Row(elem_id="main_container"):
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with gr.Column(scale=1) as uploader_column:
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gr.Markdown("### Upload Patient X-Rays")
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image_input = gr.File(label="Upload up to 3 Images", file_count="multiple", file_types=["image"], type="filepath")
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with gr.Column(scale=2, visible=False) as results_column:
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gr.Markdown("### Analysis Results")
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result_images = gr.Gallery(label="Analyzed Images", columns=3, object_fit="contain", height=350, elem_id="results_gallery")
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result_label = gr.Label(label="Overall Prediction", num_top_classes=2)
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start_over_btn = gr.Button("Start New Analysis", variant="secondary")
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with gr.Group(visible=False) as patient_info_modal:
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gr.Markdown("## Enter Patient Details", elem_classes="text-center")
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patient_name_modal = gr.Textbox(label="Patient Name", placeholder="e.g., John Doe")
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with gr.Row():
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submit_analysis_btn = gr.Button("Analyze Images", variant="primary")
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cancel_btn = gr.Button("Cancel", variant="stop")
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with gr.Column(elem_id="bottom_controls"):
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with gr.Accordion("About this Tool", open=False):
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gr.Markdown(
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with gr.Row():
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samples_btn = gr.Button("Try Sample Images")
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history_btn = gr.Button("View Patient History")
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with gr.Column(visible=False) as history_page:
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gr.Markdown("# 📜 Patient Record History", elem_classes="app_title")
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with gr.Row():
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with gr.Column(visible=False) as samples_page:
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gr.Markdown("# 🖼️ Sample Image Library", elem_classes="app_title")
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gr.Markdown("Select up to 3 images by clicking on them, then click 'Analyze'.")
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sample_gallery = gr.Gallery(value=SAMPLE_IMAGES, label="Sample Images", columns=5, height=400, elem_id="sample_gallery")
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selected_samples_textbox = gr.Textbox(visible=False, elem_id="selected_samples_textbox")
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with gr.Row():
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analyze_samples_btn = gr.Button("Analyze Selected Samples", variant="primary")
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back_to_main_btn_samp = gr.Button("⬅️ Back to Main App")
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# --- Event Handling Logic ---
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def show_patient_info(files): return gr.update(visible=True) if files else gr.update(visible=False)
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image_input.upload(fn=show_patient_info, inputs=image_input, outputs=patient_info_modal)
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async def submit_and_hide_modal(name, age, files):
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select_js = """
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(evt) => {
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const gallery = document.querySelector('#sample_gallery .grid-container');
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const clicked_container = gallery.children[evt.index];
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const hidden_input = document.querySelector('#selected_samples_textbox textarea');
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let selections = hidden_input.value ? hidden_input.value.split(',').filter(p => p.trim()) : [];
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const path = clicked_container.querySelector('img').alt;
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if (clicked_container.classList.contains('selected')) {
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clicked_container.classList.remove('selected');
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selections = selections.filter(p => p !== path);
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} else {
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if (selections.length < 3) {
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clicked_container.classList.add('selected');
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selections.push(path);
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} else {
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alert("Maximum of 3 images can be selected.");
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}
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}
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return [selections.join(',')]; // Return value must be a list/tuple for Gradio
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}
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"""
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sample_gallery.select(fn=None, js=select_js, outputs=[selected_samples_textbox])
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async def handle_sample_analysis(selected_paths_str: str):
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selected_images = [path for path in selected_paths_str.split(',') if path]
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raise gr.Error("Please select at least one sample image to analyze.")
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analysis_results = await process_analysis("Sample User", 0, selected_images, is_sample=True)
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# We need to return an update for every output component
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return [
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gr.update(visible=True), # main_app
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gr.update(visible=False), # samples_page
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*analysis_results
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]
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analyze_samples_btn.click(fn=handle_sample_analysis, inputs=[selected_samples_textbox], outputs=[main_app, samples_page, uploader_column, results_column, result_images, result_label])
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# --- Page Navigation ---
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all_pages = [main_app, history_page, samples_page]
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return [gr.update(visible=False), gr.update(visible=True), gr.update(visible=False), records_update]
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def show_samples_page():
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return [gr.update(visible=False), gr.update(visible=False), gr.update(visible=True)]
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def show_main_page():
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return [gr.update(visible=True), gr.update(visible=False), gr.update(visible=False)]
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history_btn.click(fn=show_history_page_and_refresh, outputs=all_pages + [history_df])
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samples_btn.click(fn=show_samples_page, outputs=all_pages)
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back_to_main_btn_hist.click(fn=show_main_page, outputs=all_pages)
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back_to_main_btn_samp.click(fn=show_main_page, outputs=all_pages)
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