ALYYAN commited on
Commit
bc7b5e8
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1 Parent(s): 8520a5c

Update app.py

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  1. app.py +40 -77
app.py CHANGED
@@ -1,7 +1,8 @@
1
- # app.py (Final Version with Local Samples and UI Fixes)
2
 
3
  import gradio as gr
4
  from pathlib import Path
 
5
  import asyncio
6
 
7
  from app.prediction import PredictionPipeline
@@ -9,65 +10,37 @@ from app.database import add_patient_record, get_all_records
9
 
10
  # --- Initialization ---
11
  prediction_pipeline = PredictionPipeline()
12
- # --- FIX: Point to the locally cloned sample images directory ---
13
- SAMPLE_IMAGE_DIR = Path("sample_images")
14
  try:
 
15
  SAMPLE_IMAGES = [str(p) for p in list(SAMPLE_IMAGE_DIR.glob('*/*.jpeg'))]
16
- if not SAMPLE_IMAGES:
17
- print("Warning: 'sample_images' directory found, but it's empty.")
18
- except FileNotFoundError:
19
- print("Warning: 'sample_images' directory not found. Samples will be unavailable.")
20
  SAMPLE_IMAGES = []
21
 
22
-
23
- # --- Core Logic (Async Functions are Correct) ---
24
  async def process_analysis(patient_name, patient_age, image_list, is_sample=False):
25
- # ... (no changes needed in this function)
26
- if not is_sample and (not patient_name or patient_age is None or str(patient_age).strip() == ""):
27
- raise gr.Error("Patient Name and Age are required.")
28
- if not image_list:
29
- raise gr.Error("At least one image is required.")
30
  result = prediction_pipeline.predict(image_list)
31
- if "error" in result:
32
- raise gr.Error(result["error"])
33
- final_pred = result["final_prediction"]
34
- final_conf = result["final_confidence"]
35
- if not is_sample:
36
- await add_patient_record(str(patient_name), int(patient_age), final_pred, final_conf)
37
- confidences = {"NORMAL": 0.0, "PNEUMONIA": 0.0}
38
- confidences[final_pred] = final_conf
39
- confidences["NORMAL" if final_pred == "PNEUMONIA" else "PNEUMONIA"] = 1 - final_conf
40
  return [gr.update(visible=False), gr.update(visible=True), gr.update(value=result["watermarked_images"]), gr.update(value=confidences)]
41
-
42
  async def refresh_history_table():
43
- # ... (no changes needed in this function)
44
  records = await get_all_records()
45
- data_for_df = []
46
- if records:
47
- data_for_df = [[r.get('name'), r.get('age'), r.get('prediction_result'), f"{r.get('confidence_score', 0):.2%}", r.get('timestamp').strftime('%Y-%m-%d %H:%M')] for r in records]
48
- return gr.update(value=data_for_df)
49
 
50
  # --- Gradio UI Definition ---
51
- css = """
52
- /* --- Professional Dark Theme & Fonts --- */
53
- :root { --primary-hue: 220 !important; --secondary-hue: 210 !important; --neutral-hue: 210 !important; --body-background-fill: #111827 !important; --block-background-fill: #1F2937 !important; --block-border-width: 1px !important; --border-color-accent: #374151 !important; --background-fill-secondary: #1F2937 !important;}
54
- /* --- Header & Title Styling --- */
55
- #app_header { text-align: center; }
56
- #app_title { font-size: 2.8rem !important; font-weight: 700 !important; color: #FFFFFF !important; padding-top: 1rem; }
57
- #app_subtitle { font-size: 1.2rem !important; color: #9CA3AF !important; margin-bottom: 2rem; }
58
- /* --- Layout, Spacing, and Component Styling --- */
59
- #main_container { gap: 2rem; }
60
- #results_gallery .gallery-item { padding: 0.25rem !important; background-color: #374151; border: 1px solid #374151 !important; }
61
- #bottom_controls { max-width: 600px; margin: 2.5rem auto 1rem auto; }
62
- #bottom_controls .gr-accordion > .gr-block-label { text-align: center !important; display: block !important; }
63
- /* --- FIX: Style the sample gallery for a cleaner look --- */
64
- #sample_gallery { background-color: transparent !important; border: none !important; }
65
- #sample_gallery .gallery-item { box-shadow: 0 0 5px rgba(0,0,0,0.5); border-radius: 8px !important; }
66
- """
67
  with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue"), css=css, title="Pneumonia Detection AI") as demo:
68
 
69
  with gr.Column() as main_app:
70
- # ... (main app layout is the same)
71
  with gr.Column(elem_id="app_header"):
72
  gr.Markdown("# 🩺 Pneumonia Detection AI", elem_id="app_title")
73
  gr.Markdown("An AI-powered tool to assist in the diagnosis of pneumonia.", elem_id="app_subtitle")
@@ -89,48 +62,40 @@ with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue")
89
  cancel_btn = gr.Button("Cancel", variant="stop")
90
  with gr.Column(elem_id="bottom_controls"):
91
  with gr.Accordion("About this Tool", open=False):
92
- gr.Markdown(
93
- """
94
- ### MLOps-Powered Pneumonia Detection
95
- (Your professional description here)
96
- ---
97
- **Project Team:** Alyyan Ahmed & Munim Akbar
98
- """
99
- )
100
  with gr.Row():
101
  samples_btn = gr.Button("Try Sample Images")
102
  history_btn = gr.Button("View Patient History")
103
-
104
  with gr.Column(visible=False) as history_page:
105
- # ... (history page layout is the same)
106
  gr.Markdown("# 📜 Patient Record History", elem_classes="app_title")
107
  with gr.Row():
108
  back_to_main_btn_hist = gr.Button("⬅️ Back to Main App")
109
  refresh_history_btn = gr.Button("Refresh History")
110
  history_df = gr.DataFrame(headers=["Name", "Age", "Prediction", "Confidence", "Date"], row_count=10, interactive=False)
111
 
 
112
  with gr.Column(visible=False) as samples_page:
113
  gr.Markdown("# 🖼️ Sample Image Library", elem_classes="app_title")
114
  gr.Markdown("Select up to 3 images, then click 'Analyze Selected Samples'.")
115
 
116
- # --- FIX: The Gallery component now reliably shows the local images ---
117
- sample_gallery = gr.Gallery(
118
- value=SAMPLE_IMAGES if SAMPLE_IMAGES else ["https://placehold.co/400x400/2F3136/FFFFFF/png?text=Samples\nNot+Found"],
119
  label="Sample Images",
120
- columns=5, height=400,
121
- elem_id="sample_gallery"
122
  )
123
 
124
  with gr.Row():
125
  analyze_samples_btn = gr.Button("Analyze Selected Samples", variant="primary")
126
  back_to_main_btn_samp = gr.Button("⬅️ Back to Main App")
127
-
128
  # --- Event Handling Logic ---
129
- # ... (event handlers for upload, modal, start over, are the same)
130
- def show_patient_info(files):
131
- return gr.update(visible=True) if files else gr.update(visible=False)
132
  image_input.upload(fn=show_patient_info, inputs=image_input, outputs=patient_info_modal)
133
-
134
  async def submit_and_hide_modal(name, age, files):
135
  analysis_results = await process_analysis(name, age, files)
136
  return [*analysis_results, gr.update(visible=False)]
@@ -138,34 +103,32 @@ with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue")
138
  cancel_btn.click(lambda: (gr.update(visible=False), None), None, [patient_info_modal, image_input])
139
  start_over_btn.click(fn=None, js="() => { window.location.reload(); }")
140
 
141
- # --- Sample Page Logic ---
142
  async def handle_sample_analysis(selected_images: list):
143
- if not selected_images:
144
- raise gr.Error("Please select at least one sample image to analyze.")
145
- if len(selected_images) > 3:
146
- raise gr.Error("Please select no more than 3 sample images.")
147
 
148
  analysis_results = await process_analysis("Sample User", 0, selected_images, is_sample=True)
149
 
150
  return {
151
  main_app: gr.update(visible=True),
152
  samples_page: gr.update(visible=False),
 
153
  uploader_column: analysis_results[0],
154
  results_column: analysis_results[1],
155
  result_images: analysis_results[2],
156
  result_label: analysis_results[3],
157
  }
158
- analyze_samples_btn.click(fn=handle_sample_analysis, inputs=[sample_gallery], outputs=[main_app, samples_page, uploader_column, results_column, result_images, result_label])
159
 
160
- # ... (Page Navigation is the same)
161
  all_pages = [main_app, history_page, samples_page]
162
  async def show_history_page_and_refresh():
163
  records_update = await refresh_history_table()
164
  return [gr.update(visible=False), gr.update(visible=True), gr.update(visible=False), records_update]
165
- def show_samples_page():
166
- return [gr.update(visible=False), gr.update(visible=False), gr.update(visible=True)]
167
- def show_main_page():
168
- return [gr.update(visible=True), gr.update(visible=False), gr.update(visible=False)]
169
  history_btn.click(fn=show_history_page_and_refresh, outputs=all_pages + [history_df])
170
  samples_btn.click(fn=show_samples_page, outputs=all_pages)
171
  back_to_main_btn_hist.click(fn=show_main_page, outputs=all_pages)
 
1
+ # app.py (Final Version with Checkbox Samples and Watermark Fix)
2
 
3
  import gradio as gr
4
  from pathlib import Path
5
+ from huggingface_hub import snapshot_download
6
  import asyncio
7
 
8
  from app.prediction import PredictionPipeline
 
10
 
11
  # --- Initialization ---
12
  prediction_pipeline = PredictionPipeline()
13
+ HF_DATASET_REPO = "ALYYAN/chest-xray-pneumonia-samples"
 
14
  try:
15
+ SAMPLE_IMAGE_DIR = Path(snapshot_download(repo_id=HF_DATASET_REPO, repo_type="dataset"))
16
  SAMPLE_IMAGES = [str(p) for p in list(SAMPLE_IMAGE_DIR.glob('*/*.jpeg'))]
17
+ except Exception as e:
18
+ print(f"Could not download sample images: {e}")
 
 
19
  SAMPLE_IMAGES = []
20
 
21
+ # --- Core Logic (Async Functions - Unchanged) ---
 
22
  async def process_analysis(patient_name, patient_age, image_list, is_sample=False):
23
+ # ... (code is the same)
24
+ if not is_sample and (not patient_name or patient_age is None or str(patient_age).strip() == ""): raise gr.Error("Patient Name and Age are required.")
25
+ if not image_list: raise gr.Error("At least one image is required.")
 
 
26
  result = prediction_pipeline.predict(image_list)
27
+ if "error" in result: raise gr.Error(result["error"])
28
+ final_pred, final_conf = result["final_prediction"], result["final_confidence"]
29
+ if not is_sample: await add_patient_record(str(patient_name), int(patient_age), final_pred, final_conf)
30
+ confidences = {"NORMAL": 0.0, "PNEUMONIA": 0.0}; confidences[final_pred] = final_conf; confidences["NORMAL" if final_pred == "PNEUMONIA" else "PNEUMONIA"] = 1 - final_conf
 
 
 
 
 
31
  return [gr.update(visible=False), gr.update(visible=True), gr.update(value=result["watermarked_images"]), gr.update(value=confidences)]
 
32
  async def refresh_history_table():
33
+ # ... (code is the same)
34
  records = await get_all_records()
35
+ data = [[r.get('name'), r.get('age'), r.get('prediction_result'), f"{r.get('confidence_score', 0):.2%}", r.get('timestamp').strftime('%Y-%m-%d %H:%M')] for r in records] if records else []
36
+ return gr.update(value=data)
 
 
37
 
38
  # --- Gradio UI Definition ---
39
+ css = "..." # (CSS is the same as the previous correct version)
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
40
  with gr.Blocks(theme=gr.themes.Default(primary_hue="blue", secondary_hue="blue"), css=css, title="Pneumonia Detection AI") as demo:
41
 
42
  with gr.Column() as main_app:
43
+ # ... (Main page layout is the same)
44
  with gr.Column(elem_id="app_header"):
45
  gr.Markdown("# 🩺 Pneumonia Detection AI", elem_id="app_title")
46
  gr.Markdown("An AI-powered tool to assist in the diagnosis of pneumonia.", elem_id="app_subtitle")
 
62
  cancel_btn = gr.Button("Cancel", variant="stop")
63
  with gr.Column(elem_id="bottom_controls"):
64
  with gr.Accordion("About this Tool", open=False):
65
+ gr.Markdown("...") # (Your professional description here)
 
 
 
 
 
 
 
66
  with gr.Row():
67
  samples_btn = gr.Button("Try Sample Images")
68
  history_btn = gr.Button("View Patient History")
69
+
70
  with gr.Column(visible=False) as history_page:
71
+ # ... (History page layout is the same)
72
  gr.Markdown("# 📜 Patient Record History", elem_classes="app_title")
73
  with gr.Row():
74
  back_to_main_btn_hist = gr.Button("⬅️ Back to Main App")
75
  refresh_history_btn = gr.Button("Refresh History")
76
  history_df = gr.DataFrame(headers=["Name", "Age", "Prediction", "Confidence", "Date"], row_count=10, interactive=False)
77
 
78
+ # --- SAMPLES PAGE (THE FIX) ---
79
  with gr.Column(visible=False) as samples_page:
80
  gr.Markdown("# 🖼️ Sample Image Library", elem_classes="app_title")
81
  gr.Markdown("Select up to 3 images, then click 'Analyze Selected Samples'.")
82
 
83
+ # Use a CheckboxGroup with images as choices
84
+ sample_checkboxes = gr.CheckboxGroup(
 
85
  label="Sample Images",
86
+ choices=[(Image.open(p), p) for p in SAMPLE_IMAGES], # Tuple of (PIL Image for display, path for value)
87
+ type="value"
88
  )
89
 
90
  with gr.Row():
91
  analyze_samples_btn = gr.Button("Analyze Selected Samples", variant="primary")
92
  back_to_main_btn_samp = gr.Button("⬅️ Back to Main App")
93
+
94
  # --- Event Handling Logic ---
95
+
96
+ # ... (upload, modal, start_over handlers are correct)
97
+ def show_patient_info(files): return gr.update(visible=True) if files else gr.update(visible=False)
98
  image_input.upload(fn=show_patient_info, inputs=image_input, outputs=patient_info_modal)
 
99
  async def submit_and_hide_modal(name, age, files):
100
  analysis_results = await process_analysis(name, age, files)
101
  return [*analysis_results, gr.update(visible=False)]
 
103
  cancel_btn.click(lambda: (gr.update(visible=False), None), None, [patient_info_modal, image_input])
104
  start_over_btn.click(fn=None, js="() => { window.location.reload(); }")
105
 
106
+ # --- SAMPLE PAGE LOGIC (THE FIX) ---
107
  async def handle_sample_analysis(selected_images: list):
108
+ # selected_images is now a list of file paths from the checkbox group
109
+ if not selected_images: raise gr.Error("Please select at least one sample image.")
110
+ if len(selected_images) > 3: raise gr.Error("Please select no more than 3 sample images.")
 
111
 
112
  analysis_results = await process_analysis("Sample User", 0, selected_images, is_sample=True)
113
 
114
  return {
115
  main_app: gr.update(visible=True),
116
  samples_page: gr.update(visible=False),
117
+ # Unpack dictionary updates for specific components
118
  uploader_column: analysis_results[0],
119
  results_column: analysis_results[1],
120
  result_images: analysis_results[2],
121
  result_label: analysis_results[3],
122
  }
123
+ analyze_samples_btn.click(fn=handle_sample_analysis, inputs=[sample_checkboxes], outputs=[main_app, samples_page, uploader_column, results_column, result_images, result_label])
124
 
125
+ # ... (Page Navigation is correct)
126
  all_pages = [main_app, history_page, samples_page]
127
  async def show_history_page_and_refresh():
128
  records_update = await refresh_history_table()
129
  return [gr.update(visible=False), gr.update(visible=True), gr.update(visible=False), records_update]
130
+ def show_samples_page(): return [gr.update(visible=False), gr.update(visible=False), gr.update(visible=True)]
131
+ def show_main_page(): return [gr.update(visible=True), gr.update(visible=False), gr.update(visible=False)]
 
 
132
  history_btn.click(fn=show_history_page_and_refresh, outputs=all_pages + [history_df])
133
  samples_btn.click(fn=show_samples_page, outputs=all_pages)
134
  back_to_main_btn_hist.click(fn=show_main_page, outputs=all_pages)