Fix visualization: Persist Physics Geometry to Global State

Upgrade to Protocol 26: Gödel-Zeta Datastore & Recursive Manifold

Protocol 22: Universal Model Gating & Network Layer Fusion

Protocol 22: Update HF Inference to Router endpoint

Optimize: N8N MoA Blueprint + Adaptive Grid Slider

Optimize: Self-Contained Network (Singleton) & KB Loading

Fix: Add Warm-Up Atom (Harmonic Resonance) to Baker to fix black image

Feature: Add ARCHITECTURE.md and display it in new UI tab

Fix: Add proper exports to logos/__init__.py for DSPBridge integration

Refactor: Restructure into Machine Shop protocol (logos package, gradio ui)