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"""
Memory-efficient, multiprocessed reclean of litdata_3b (~3B tokens).
Problem: The old script loaded ALL 3B tokens β decoded 4.3M docs β re-tokenized
into a Python list β OOM at ~12 GB list + ~15 GB decoded text.
Solution: Process in chunk batches (10 chunks β 168M tokens β 670 MB).
1. Read 10 chunks at a time
2. Split tokens into documents (carry partial docs across batches)
3. Decode with tokenizer.decode_batch (multithreaded Rust)
4. Deep clean + smart filter with multiprocessing Pool (all CPU cores)
5. Re-tokenize with encode_batch (multithreaded Rust)
6. Stream output to litdata chunks incrementally (never accumulate)
Peak memory: ~4-5 GB instead of 40+ GB.
Output: Base/data/litdata_3b_clean/ (separate, not merged)
"""
import json
import os
import re
import sys
import time
import unicodedata
from pathlib import Path
from multiprocessing import Pool, cpu_count
from collections import Counter
import numpy as np
from tokenizers import Tokenizer
ROOT = Path(__file__).resolve().parent.parent.parent
BLOCK_SIZE = 1025
DTYPE = np.int32
CHUNK_BYTES_TARGET = 64 * 1024 * 1024
EOS_TOKEN_ID = 0
CHUNKS_PER_BATCH = 10 # ~670 MB per batch
NUM_WORKERS = max(1, cpu_count() - 2) # leave 2 cores for main + I/O
DECODE_BATCH = 8000 # docs per decode_batch call
ENCODE_BATCH = 8000 # docs per encode_batch call
DATA_DIR = ROOT / "Base" / "data"
INPUT_DIR = DATA_DIR / "litdata_3b"
OUTPUT_DIR = DATA_DIR / "litdata_3b_clean"
TOKENIZER_PATH = str(ROOT / "Base" / "checkpoints" / "EleutherAI" / "pythia-160m" / "tokenizer.json")
# ==============================================================================
# TEXT CLEANING PIPELINE (deep_clean + smart_filter)
# ==============================================================================
CONTROL_CHARS = [
"\x00", "\x01", "\x02", "\x03", "\x04", "\x05", "\x06", "\x07",
"\x08", "\x0b", "\x0c", "\x0e", "\x0f", "\x10", "\x11", "\x12",
"\x13", "\x14", "\x15", "\x16", "\x17", "\x18", "\x19", "\x1a",
"\x1b", "\x1c", "\x1d", "\x1e", "\x1f", "\x7f", "\ufeff", "\ufffd",
]
HTML_ENTITIES = [
("&", "&"), ("<", "<"), (">", ">"),
(""", '"'), ("'", "'"), ("'", "'"),
(" ", " "), ("—", " - "), ("–", "-"),
("…", "..."), ("«", '"'), ("»", '"'),
("•", "- "), ("·", " "), ("©", "(c)"),
("®", "(R)"), ("™", "(TM)"), ("°", " degrees"),
]
RE_URL = re.compile(r'https?://\S+|www\.\S+', re.I)
RE_EMAIL = re.compile(r'\b[a-zA-Z0-9._%+-]+@[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}\b')
RE_FILE_PATH = re.compile(r'(?:[A-Z]:\\|/(?:home|usr|var|etc|opt)/)\S+')
RE_HTML_TAG = re.compile(r'</?[a-zA-Z][a-zA-Z0-9]*(?:\s[^>]*)?\s*/?>')
RE_HTML_COMMENT = re.compile(r'<!--.*?-->', re.DOTALL)
RE_CODE_BLOCK = re.compile(r'```[\s\S]*?```')
RE_IMPORT = re.compile(r'^(?:import |from \S+ import |#include |using namespace |require\()', re.M)
RE_REPEATED_LINE = re.compile(r'^(.{20,})\n(?:\1\n?)+', re.M)
RE_REPEATED_PUNCT = re.compile(r'([!?.])\1{3,}')
RE_REPEATED_CHAR = re.compile(r'(.)\1{5,}')
RE_REPEATED_WORD = re.compile(r'\b(\w+)(?:\s+\1){2,}\b', re.I)
RE_MULTI_NEWLINE = re.compile(r'\n{4,}')
RE_MULTI_SPACE = re.compile(r'[ \t]{2,}')
RE_TRAILING_SPACE = re.compile(r'[ \t]+$', re.M)
RE_NO_SPACE_AFTER_PERIOD = re.compile(r'([.!?])([A-Z])')
RE_DOUBLE_PERIOD = re.compile(r'\.{2}(?!\.)')
RE_SPACE_BEFORE_PUNCT = re.compile(r'\s+([.,;:!?])')
# Smart filter patterns
RE_CJK = re.compile(r'[\u4e00-\u9fff\u3040-\u309f\u30a0-\u30ff\uac00-\ud7af]{3,}')
RE_ARABIC = re.compile(r'[\u0600-\u06ff]{5,}')
RE_CYRILLIC = re.compile(r'[\u0400-\u04ff]{5,}')
RE_DEVANAGARI = re.compile(r'[\u0900-\u097f]{5,}')
RE_RESIDUAL_CODE = re.compile(
r'(function\s*\(|var\s+\w+\s*=|console\.log|document\.get|if\s*\(\s*\w+\s*[!=]==)', re.I
)
RE_COOKIE_LINE = re.compile(r'^.*(?:cookie|cookies)\s+(?:policy|consent|notice|preferences|settings).*$', re.I | re.M)
RE_SUBSCRIBE_LINE = re.compile(r'^.*(?:subscribe|sign\s*up\s+(?:for|to)\s+(?:our|the)\s+newsletter|unsubscribe|opt[\s-]*out\s+of).*$', re.I | re.M)
RE_CLICKBAIT_LINE = re.compile(r'^.*(?:you\s+won\'?t\s+believe|click\s+here|read\s+more\s*\.{0,3}$|share\s+this\s+(?:article|post|story)|trending\s+now|sponsored\s+content|advertisement).*$', re.I | re.M)
RE_SOCIAL_LINE = re.compile(r'^.*(?:follow\s+us\s+on|share\s+on\s+(?:facebook|twitter|linkedin|instagram)|like\s+us\s+on|tweet\s+this).*$', re.I | re.M)
RE_NAV_LINE = re.compile(r'^.*(?:skip\s+to\s+(?:main\s+)?content|back\s+to\s+top|previous\s+article|next\s+article|related\s+(?:articles|posts)).*$', re.I | re.M)
RE_LOGIN_LINE = re.compile(r'^.*(?:log\s*in\s+to\s+(?:your|an)\s+account|create\s+(?:a\s+)?(?:free\s+)?account|forgot\s+(?:your\s+)?password|already\s+(?:a\s+)?member).*$', re.I | re.M)
RE_COMMENT_LINE = re.compile(r'^.*(?:leave\s+a\s+(?:comment|reply)|post\s+a\s+comment|\d+\s+comments?$|logged\s+in\s+as).*$', re.I | re.M)
RE_COPYRIGHT_LINE = re.compile(r'^.*(?:all\s+rights\s+reserved|\(c\)\s*\d{4}|copyright\s+\d{4}).*$', re.I | re.M)
def deep_clean(text):
"""Full deep cleaning pipeline."""
if not text or len(text.strip()) < 30:
return None
text = unicodedata.normalize("NFKC", text)
for ch in CONTROL_CHARS:
text = text.replace(ch, "")
for old, new in HTML_ENTITIES:
text = text.replace(old, new)
text = RE_HTML_COMMENT.sub("", text)
text = RE_HTML_TAG.sub("", text)
text = RE_URL.sub("", text)
text = RE_EMAIL.sub("", text)
text = RE_FILE_PATH.sub("", text)
text = RE_CODE_BLOCK.sub("", text)
text = RE_REPEATED_LINE.sub(r'\1', text)
text = RE_REPEATED_PUNCT.sub(r'\1\1\1', text)
text = RE_REPEATED_CHAR.sub(r'\1\1\1', text)
text = RE_REPEATED_WORD.sub(r'\1', text)
text = text.replace('\t', ' ')
text = RE_TRAILING_SPACE.sub('', text)
text = RE_MULTI_SPACE.sub(' ', text)
text = RE_MULTI_NEWLINE.sub('\n\n\n', text)
text = RE_DOUBLE_PERIOD.sub('.', text)
text = RE_NO_SPACE_AFTER_PERIOD.sub(r'\1 \2', text)
text = RE_SPACE_BEFORE_PUNCT.sub(r'\1', text)
text = text.replace('\u2018', "'").replace('\u2019', "'")
text = text.replace('\u201c', '"').replace('\u201d', '"')
text = text.replace('\u2013', '-').replace('\u2014', ' - ')
text = text.replace('\u2026', '...')
text = text.replace('\u2022', '- ')
text = text.replace('\u00b7', ' ')
text = text.replace('\u00a0', ' ')
lines = text.split('\n')
clean_lines = []
for line in lines:
line = line.strip()
if not line:
clean_lines.append('')
continue
if len(line) > 10:
alpha_count = sum(1 for c in line if c.isalpha())
if alpha_count / len(line) < 0.40:
continue
if line.count('|') > 3 or line.count('{') > 2 or line.count('}') > 2:
continue
if RE_IMPORT.match(line):
continue
if line and line[0].isalpha() and line[0].islower():
if not clean_lines or clean_lines[-1] == '' or clean_lines[-1].rstrip().endswith(('.', '!', '?', ':')):
line = line[0].upper() + line[1:]
clean_lines.append(line)
text = '\n'.join(clean_lines)
text = text.strip()
paragraphs = text.split('\n\n')
seen = set()
unique_paragraphs = []
for p in paragraphs:
p_stripped = p.strip()
if not p_stripped:
continue
p_key = ' '.join(p_stripped.lower().split())
if p_key not in seen:
seen.add(p_key)
unique_paragraphs.append(p_stripped)
text = '\n\n'.join(unique_paragraphs)
text = text.strip()
if len(text) < 50:
return None
if len(text.split()) < 10:
return None
ascii_count = sum(1 for c in text if ord(c) < 128)
if ascii_count / max(len(text), 1) < 0.85:
return None
return text
def smart_filter(text):
"""Smart cleanup: returns (keep, cleaned_text, reason)."""
words = text.split()
word_count = len(words)
if word_count < 50:
return False, text, "too short"
scripts = []
if RE_CJK.search(text): scripts.append("CJK")
if RE_ARABIC.search(text): scripts.append("Arabic")
if RE_CYRILLIC.search(text): scripts.append("Cyrillic")
if RE_DEVANAGARI.search(text): scripts.append("Devanagari")
if scripts:
return False, text, "non-English"
if word_count > 50:
unique_ratio = len(set(w.lower() for w in words)) / word_count
if unique_ratio < 0.20:
return False, text, "repetitive"
code_matches = RE_RESIDUAL_CODE.findall(text)
if len(code_matches) >= 5:
return False, text, "residual code"
for pattern in [RE_COOKIE_LINE, RE_SUBSCRIBE_LINE, RE_CLICKBAIT_LINE,
RE_SOCIAL_LINE, RE_NAV_LINE, RE_LOGIN_LINE,
RE_COMMENT_LINE, RE_COPYRIGHT_LINE]:
text = pattern.sub('', text)
lines = text.split('\n')
clean_lines = []
for line in lines:
stripped = line.strip()
if stripped and len(stripped) > 10:
digit_count = sum(1 for c in stripped if c.isdigit() or c in ' ,.\t-+/%$')
if digit_count / len(stripped) > 0.80:
continue
clean_lines.append(line)
text = '\n'.join(clean_lines)
text = re.sub(r'\n{3,}', '\n\n', text)
text = text.strip()
if len(text.split()) < 50:
return False, text, "too short after stripping"
return True, text, None
def clean_and_filter(text):
"""Combined deep_clean + smart_filter for multiprocessing.
Returns (cleaned_text_or_None, drop_reason_or_None, boilerplate_chars_stripped).
"""
result = deep_clean(text)
if result is None:
return None, "deep_clean_drop", 0
keep, stripped, reason = smart_filter(result)
if not keep:
return None, reason, 0
boilerplate = len(result) - len(stripped)
return stripped, None, boilerplate
# ==============================================================================
# STREAMING CHUNK WRITER (never accumulates full token stream)
# ==============================================================================
class StreamingChunkWriter:
"""Writes litdata chunks incrementally. Flushes when buffer hits target size."""
def __init__(self, output_dir, config):
self.output_dir = Path(output_dir)
os.makedirs(str(self.output_dir), exist_ok=True)
self.config = config
self.dtype_size = DTYPE().itemsize
self.tokens_per_chunk = (CHUNK_BYTES_TARGET // self.dtype_size // BLOCK_SIZE) * BLOCK_SIZE
self.buffer = []
self.chunks_metadata = []
self.chunk_idx = 0
self.total_tokens = 0
def add_document(self, token_ids):
"""Add one document's token IDs + EOS. Flushes chunks as needed."""
self.buffer.extend(token_ids)
self.buffer.append(EOS_TOKEN_ID)
# Flush full chunks
while len(self.buffer) >= self.tokens_per_chunk:
self._flush_chunk()
def add_tokens_batch(self, encoded_batch):
"""Add a batch of encoded documents efficiently."""
for enc in encoded_batch:
ids = enc.ids
self.buffer.extend(ids)
self.buffer.append(EOS_TOKEN_ID)
while len(self.buffer) >= self.tokens_per_chunk:
self._flush_chunk()
def _flush_chunk(self):
"""Write one chunk from the buffer."""
if len(self.buffer) < BLOCK_SIZE:
return
take = min(len(self.buffer), self.tokens_per_chunk)
num_blocks = take // BLOCK_SIZE
if num_blocks == 0:
return
actual_tokens = num_blocks * BLOCK_SIZE
chunk_data = np.array(self.buffer[:actual_tokens], dtype=DTYPE)
self.buffer = self.buffer[actual_tokens:]
filename = f"chunk-0-{self.chunk_idx}.bin"
filepath = self.output_dir / filename
header_num = np.array([num_blocks], dtype=np.uint32)
offsets = np.arange(num_blocks + 1, dtype=np.uint32) * (BLOCK_SIZE * self.dtype_size)
header = np.concatenate([header_num, offsets])
with open(filepath, "wb") as f:
header.tofile(f)
chunk_data.tofile(f)
meta = {
"chunk_bytes": int(header.nbytes + chunk_data.nbytes),
"chunk_size": num_blocks,
"dim": int(actual_tokens),
"filename": filename,
}
self.chunks_metadata.append(meta)
self.total_tokens += actual_tokens
self.chunk_idx += 1
if self.chunk_idx % 25 == 0:
print(f" Flushed chunk {self.chunk_idx} ({self.total_tokens:,} tokens written)")
def finalize(self):
"""Flush remaining buffer and write index.json."""
while len(self.buffer) >= BLOCK_SIZE:
self._flush_chunk()
# Discard any remaining tokens that don't fill a block
discarded = len(self.buffer)
self.buffer = []
index = {
"chunks": self.chunks_metadata,
"config": self.config,
"updated_at": str(time.time()),
}
with open(self.output_dir / "index.json", "w") as f:
json.dump(index, f, indent=2)
return self.total_tokens, discarded
# ==============================================================================
# CHUNK READING
# ==============================================================================
def read_chunk_tokens(litdata_dir, chunk_meta):
"""Read a single chunk's token data (no header)."""
chunk_path = litdata_dir / chunk_meta["filename"]
n_blocks = chunk_meta["chunk_size"]
header_ints = 1 + n_blocks + 1
header_bytes = header_ints * 4
with open(chunk_path, "rb") as f:
f.seek(header_bytes)
data = np.fromfile(f, dtype=DTYPE, count=chunk_meta["dim"])
return data
def split_documents_from_tokens(token_array):
"""Split token array by EOS into list of per-document token lists (as Python lists)."""
eos_positions = np.where(token_array == EOS_TOKEN_ID)[0]
docs = []
start = 0
for eos_pos in eos_positions:
if eos_pos > start:
docs.append(token_array[start:eos_pos].tolist())
start = eos_pos + 1
# Return remaining tokens after last EOS (partial doc carry-over)
remainder = token_array[start:] if start < len(token_array) else np.array([], dtype=DTYPE)
return docs, remainder
# ==============================================================================
# MAIN PIPELINE
# ==============================================================================
def main():
t_start = time.time()
print("Loading tokenizer...")
tokenizer = Tokenizer.from_file(TOKENIZER_PATH)
print(f"\n{'='*75}")
print(f" RECLEAN litdata_3b (Memory-Efficient + Multiprocessing)")
print(f" Input: {INPUT_DIR}")
print(f" Output: {OUTPUT_DIR}")
print(f" Workers: {NUM_WORKERS} CPU cores")
print(f" Batch: {CHUNKS_PER_BATCH} chunks at a time")
print(f"{'='*75}")
# Read index
with open(INPUT_DIR / "index.json") as f:
index = json.load(f)
all_chunk_metas = index["chunks"]
total_input_tokens = sum(c["dim"] for c in all_chunk_metas)
num_chunks = len(all_chunk_metas)
print(f"\n Input: {num_chunks} chunks, {total_input_tokens:,} tokens")
# Output config (same format)
config = {
"block_size": BLOCK_SIZE,
"vocab_size": tokenizer.get_vocab_size(),
}
# Stats
total_docs_in = 0
total_docs_kept = 0
total_docs_dropped = 0
total_boilerplate = 0
drop_reasons = Counter()
# Initialize streaming writer
writer = StreamingChunkWriter(str(OUTPUT_DIR), config)
# Carry-over: partial document tokens spanning chunk boundaries
carry_over = np.array([], dtype=DTYPE)
# ββ Process in batches of chunks ββββββββββββββββββββββββββββββββββββββ
num_batches = (num_chunks + CHUNKS_PER_BATCH - 1) // CHUNKS_PER_BATCH
print(f" Processing in {num_batches} batches of {CHUNKS_PER_BATCH} chunks...\n")
# Create multiprocessing pool for cleaning
pool = Pool(processes=NUM_WORKERS)
for batch_idx in range(num_batches):
batch_start = batch_idx * CHUNKS_PER_BATCH
batch_end = min(batch_start + CHUNKS_PER_BATCH, num_chunks)
batch_metas = all_chunk_metas[batch_start:batch_end]
t_batch = time.time()
print(f" ββ Batch {batch_idx+1}/{num_batches} (chunks {batch_start}-{batch_end-1}) ββ")
# 1. Read chunk tokens
batch_tokens_list = []
for cm in batch_metas:
batch_tokens_list.append(read_chunk_tokens(INPUT_DIR, cm))
batch_tokens = np.concatenate(batch_tokens_list)
del batch_tokens_list
# Prepend carry-over from previous batch
if len(carry_over) > 0:
batch_tokens = np.concatenate([carry_over, batch_tokens])
carry_over = np.array([], dtype=DTYPE)
batch_token_count = len(batch_tokens)
# 2. Split into documents
doc_token_lists, carry_over = split_documents_from_tokens(batch_tokens)
del batch_tokens
num_docs = len(doc_token_lists)
total_docs_in += num_docs
# 3. Decode documents to text (tokenizer.decode_batch is multithreaded Rust)
t_dec = time.time()
raw_texts = tokenizer.decode_batch(doc_token_lists, skip_special_tokens=False)
del doc_token_lists
dec_time = time.time() - t_dec
# 4. Clean + smart filter in parallel across all cores
t_clean = time.time()
results = pool.map(clean_and_filter, raw_texts, chunksize=512)
del raw_texts
clean_time = time.time() - t_clean
# Collect cleaned texts
cleaned_texts = []
batch_dropped = 0
batch_boilerplate = 0
for cleaned, reason, bp in results:
if cleaned is not None:
cleaned_texts.append(cleaned)
batch_boilerplate += bp
else:
batch_dropped += 1
drop_reasons[reason] += 1
del results
batch_kept = len(cleaned_texts)
total_docs_kept += batch_kept
total_docs_dropped += batch_dropped
total_boilerplate += batch_boilerplate
# 5. Re-tokenize + stream to writer (encode_batch is multithreaded Rust)
t_tok = time.time()
for i in range(0, len(cleaned_texts), ENCODE_BATCH):
sub = cleaned_texts[i:i+ENCODE_BATCH]
encoded = tokenizer.encode_batch(sub, add_special_tokens=False)
writer.add_tokens_batch(encoded)
del cleaned_texts
tok_time = time.time() - t_tok
elapsed = time.time() - t_batch
print(f" {batch_token_count:,} tokens β {num_docs:,} docs β kept {batch_kept:,} / dropped {batch_dropped:,}")
print(f" decode {dec_time:.1f}s | clean {clean_time:.1f}s | tokenize {tok_time:.1f}s | total {elapsed:.1f}s")
print(f" Running: {total_docs_kept:,} kept, {total_docs_dropped:,} dropped, {writer.total_tokens:,} tokens written")
pool.close()
pool.join()
# Handle carry-over (last partial doc if any)
if len(carry_over) > 0:
text = tokenizer.decode(carry_over.tolist(), skip_special_tokens=False)
result = deep_clean(text)
if result is not None:
keep, stripped, reason = smart_filter(result)
if keep:
encoded = tokenizer.encode(stripped, add_special_tokens=False)
writer.buffer.extend(encoded.ids)
writer.buffer.append(EOS_TOKEN_ID)
total_docs_kept += 1
total_boilerplate += len(result) - len(stripped)
else:
total_docs_dropped += 1
drop_reasons[reason] += 1
else:
total_docs_dropped += 1
drop_reasons["deep_clean_drop"] += 1
total_docs_in += 1
# Finalize output
final_tokens, discarded = writer.finalize()
total_time = time.time() - t_start
# ββ Report ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
print(f"\n{'='*75}")
print(f" RECLEAN REPORT - litdata_3b")
print(f"{'='*75}")
print(f"\n Total time: {total_time:.0f}s ({total_time/60:.1f} min)")
print(f" Workers: {NUM_WORKERS} CPU cores")
print(f"\n INPUT")
print(f" {'-'*60}")
print(f" Chunks: {num_chunks}")
print(f" Tokens: {total_input_tokens:,}")
print(f" Documents: {total_docs_in:,}")
print(f"\n CLEANING")
print(f" {'-'*60}")
print(f" Kept: {total_docs_kept:,}")
print(f" Dropped: {total_docs_dropped:,} ({total_docs_dropped/(max(total_docs_in,1))*100:.2f}%)")
if drop_reasons:
print(f" Drop reasons:")
for reason, count in sorted(drop_reasons.items(), key=lambda x: -x[1]):
print(f" {reason:<35} {count:>8,}")
print(f" Boilerplate stripped: {total_boilerplate:,} chars")
print(f"\n OUTPUT")
print(f" {'-'*60}")
print(f" Location: {OUTPUT_DIR}")
print(f" Chunks: {writer.chunk_idx}")
print(f" Tokens: {final_tokens:,}")
print(f" Discarded: {discarded} trailing tokens (< 1 block)")
print(f" Format: litdata binary (int32, BLOCK_SIZE=1025, EOS=0)")
diff = total_input_tokens - final_tokens
print(f"\n Token change: {total_input_tokens:,} β {final_tokens:,}")
print(f" Difference: {diff:,} ({diff/max(total_input_tokens,1)*100:.2f}%)")
print(f"\n{'='*75}")
# Save report
report_lines = [
f"RECLEAN REPORT - litdata_3b",
f"Time: {total_time:.0f}s ({total_time/60:.1f} min)",
f"Workers: {NUM_WORKERS}",
f"",
f"INPUT: {num_chunks} chunks, {total_input_tokens:,} tokens, {total_docs_in:,} docs",
f"OUTPUT: {writer.chunk_idx} chunks, {final_tokens:,} tokens",
f"",
f"Docs kept: {total_docs_kept:,}",
f"Docs dropped: {total_docs_dropped:,}",
]
if drop_reasons:
for reason, count in sorted(drop_reasons.items(), key=lambda x: -x[1]):
report_lines.append(f" {reason}: {count:,}")
report_lines.append(f"Boilerplate stripped: {total_boilerplate:,} chars")
report_lines.append(f"Token change: {total_input_tokens:,} -> {final_tokens:,} ({diff/max(total_input_tokens,1)*100:.2f}%)")
with open(OUTPUT_DIR / "CLEAN_REPORT.txt", "w", encoding="utf-8") as f:
f.write("\n".join(report_lines))
print(f" Report saved to: {OUTPUT_DIR / 'CLEAN_REPORT.txt'}")
print(f" Done!")
if __name__ == "__main__":
main()
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