app.py

import gradio as gr
import tempfile
from pathlib import Path
from wrapper import run_pipeline_on_image
import numpy as np
from PIL import Image
from itertools import product

def show_preview(image):
    """Render uploaded image faithfully, including 16-bit/single-channel inputs.

    - RGB/RGBA: show as-is (strip alpha)
    - 16-bit or single-channel: min-max (or 1-99%ile) normalize to 8-bit for display
    """
    if image is None:
        return None
    try:
        arr = np.array(image)
        # RGBA → RGB
        if arr.ndim == 3 and arr.shape[2] == 4:
            return image.convert("RGB")
        # RGB → as-is
        if arr.ndim == 3 and arr.shape[2] == 3:
            return image
        # Single-channel or higher bit-depth
        if arr.ndim == 2 or (arr.ndim == 3 and arr.shape[2] == 1):
            if arr.ndim == 3:
                arr = arr[..., 0]
            a = np.nan_to_num(arr.astype(np.float64), nan=0.0, posinf=0.0, neginf=0.0)
            # Robust contrast stretch
            vmin = np.percentile(a, 1.0)
            vmax = np.percentile(a, 99.0)
            if not np.isfinite(vmin) or not np.isfinite(vmax) or vmax <= vmin:
                vmin, vmax = float(np.min(a)), float(np.max(a))
            denom = max(vmax - vmin, 1e-6)
            vis = np.clip((a - vmin) / denom, 0.0, 1.0) * 255.0
            vis8 = vis.astype(np.uint8)
            return Image.fromarray(vis8, mode='L')
        # Fallback
        return image.convert("RGB")
    except Exception:
        return image

def process(image):
    if image is None:
        return None, None, [], ""
    with tempfile.TemporaryDirectory() as tmpdir:
        # Save PIL image preserving original format
        ext = image.format.lower() if image.format else 'png'
        img_path = Path(tmpdir) / f"input.{ext}"
        image.save(img_path)
        outputs = run_pipeline_on_image(str(img_path), tmpdir, save_artifacts=True)

        # Assemble displays
        def load_pil(path_str):
            try:
                if not path_str:
                    return None
                im = Image.open(path_str)
                im = im.convert('RGB')
                # Copy to memory so it survives after tmpdir is removed
                copied = im.copy()
                im.close()
                return copied
            except Exception:
                return None

        overlay = load_pil(outputs.get('Overlay'))
        mask = load_pil(outputs.get('Mask'))
        composite = load_pil(outputs.get('Composite'))
        order = ['NDVI', 'ARI', 'GNDVI']
        gallery_items = [load_pil(outputs[k]) for k in order if k in outputs]
        stats_text = outputs.get('StatsText', '')
        return composite, overlay, mask, gallery_items, stats_text

with gr.Blocks() as demo:
    gr.Markdown("# 🌿 Sorghum Plant Analysis Demo")
    gr.Markdown("Upload a sorghum plant image to analyze vegetation indices, segmentation overlay, and stats.")

    with gr.Row():
        with gr.Column():
            inp = gr.Image(type="pil", label="Upload Image")
            run = gr.Button("Run Pipeline", variant="primary")
        with gr.Column():
            preview = gr.Image(type="pil", label="Uploaded Image Preview", interactive=False)

    with gr.Row():
        composite_img = gr.Image(type="pil", label="Composite (Segmentation Input)", interactive=False)
        overlay_img = gr.Image(type="pil", label="Segmentation Overlay", interactive=False)
        mask_img = gr.Image(type="pil", label="Mask", interactive=False)

    gallery = gr.Gallery(label="Vegetation Indices", columns=3, height="auto")
    stats = gr.Textbox(label="Statistics", lines=4)

    # Update preview when image is uploaded
    inp.change(fn=show_preview, inputs=inp, outputs=preview)
    run.click(process, inputs=inp, outputs=[composite_img, overlay_img, mask_img, gallery, stats])

if __name__ == "__main__":
    demo.launch()