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Browse files- README.md +151 -75
- app.py +411 -161
- model.joblib +1 -1
README.md
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# BrainWise
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BrainWise is a comprehensive web application designed to help users with brain health monitoring, stroke prediction, and cognitive enhancement through health tracking, personalized goals, and educational resources.
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## 🧠 Features
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- **Health Metrics Tracking**: Monitor vital signs and health indicators that affect brain health
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- **Stroke Risk Prediction**: AI-powered stroke risk assessment using machine learning models
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- **Brain Scan Analysis**: Detect brain tumors and Alzheimer's disease from MRI scans
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- **Research & Studies**: Access to latest peer-reviewed research on brain health and stroke prevention
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- **Educational Resources**: Curated guides and video content from trusted sources
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- **Cognitive Training Tools**: Interactive exercises for brain health improvement
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- **Data Visualization**: View your progress through interactive charts and visualizations
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## 🚀 Getting Started
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### Prerequisites
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- Node.js 18+
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- npm or yarn
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- MongoDB instance (local or Atlas)
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- Uploadcare account (for image handling)
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- Hugging Face account (for ML model hosting)
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### Installation
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1. Clone the repository
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```bash
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git clone https://github.com/AbdullahSaeed1211/brainwise.git
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cd brainwise
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```
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2. Install dependencies
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```bash
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npm install
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# or
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yarn install
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```
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3. Set up environment variables
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```
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# Create a .env.local file with the following variables
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MONGODB_URI=your_mongodb_connection_string
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NEXT_PUBLIC_UPLOADCARE_PUBLIC_KEY=your_uploadcare_public_key
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UPLOADCARE_SECRET_KEY=your_uploadcare_secret_key
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SEMANTIC_SCHOLAR_API_KEY=your_api_key
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```
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4. Run the development server
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```bash
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npm run dev
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# or
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yarn dev
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```
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5. Open [http://localhost:3000](http://localhost:3000) in your browser
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## 📚 Documentation
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Detailed documentation can be found in the `/docs` directory:
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- [Architecture Overview](docs/architecture-overview.md)
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- [Authentication System](docs/authentication-system.md)
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- [Health Metrics System](docs/health-metrics-system.md)
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- [ML Model Hosting](docs/ml-hosting-architecture.md)
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- [Brain Scan Analysis](docs/ml-hosting-guide.md)
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- [Data Visualization](docs/data-visualization.md)
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- [Research Integration](docs/research-integration.md)
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## 🧩 Project Structure
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```
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brainwise/
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├── app/ # Next.js 14 App Router pages & API routes
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│ ├── api/ # API routes for ML models and data
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│ ├���─ predictors/ # Brain scan analysis tools (tumor, alzheimers)
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│ ├── research/ # Research papers and studies
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│ ├── tools/ # Brain health tools and assessments
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│ └── dashboard/ # User dashboard and metrics
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├── components/ # React components
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│ ├── ui/ # Shadcn UI components
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│ ├── charts/ # Data visualization components
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│ └── forms/ # Form components
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├── lib/ # Utility functions and shared logic
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├── public/ # Static assets
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├── types/ # TypeScript type definitions
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└── docs/ # Documentation
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```
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## 🔧 Technology Stack
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- **Frontend**: Next.js 14, React, TypeScript, Tailwind CSS, Shadcn UI
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- **Backend**: Next.js API Routes, MongoDB
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- **Machine Learning**: Hugging Face Spaces, TensorFlow.js
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- **Image Handling**: Uploadcare CDN
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- **Research API**: Semantic Scholar API
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- **Visualization**: Recharts, Framer Motion
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- **Authentication**: Custom auth (with plans to migrate to Clerk)
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## 🌱 Development Roadmap
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- [x] Health metrics tracking system
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- [x] Stroke risk prediction model
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- [x] Brain tumor detection model
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- [x] Alzheimer's detection model
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- [x] Research paper integration
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- [x] Educational resources
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- [x] Cognitive training tools
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- [ ] Advanced data analytics dashboard
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- [ ] Mobile optimization
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- [ ] Newsletter system
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## 🔒 Security & Privacy
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BrainWise prioritizes the security and privacy of health data:
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- All health data is associated with user IDs
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- Authentication required for all sensitive operations
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- Medical images are securely stored using Uploadcare's HIPAA-compliant storage
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- No third-party access to health information
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- HIPAA-informed practices for handling sensitive data
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- Secure API key management
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## 🤝 Contributing
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Contributions are welcome! Please feel free to submit a Pull Request.
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1. Fork the repository
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2. Create your feature branch (`git checkout -b feature/amazing-feature`)
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3. Commit your changes (`git commit -m 'Add some amazing feature'`)
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4. Push to the branch (`git push origin feature/amazing-feature`)
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5. Open a Pull Request
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## 📄 License
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This project is licensed under the MIT License - see the LICENSE file for details.
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## 📱 Contact
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Project Link: [https://github.com/AbdullahSaeed1211/brainwise](https://github.com/AbdullahSaeed1211/brainwise)
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## 🙏 Acknowledgements
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- [Next.js](https://nextjs.org/)
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- [Tailwind CSS](https://tailwindcss.com/)
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- [Shadcn UI](https://ui.shadcn.com/)
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- [Uploadcare](https://uploadcare.com/)
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- [Hugging Face](https://huggingface.co/)
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- [Recharts](https://recharts.org/)
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- [Semantic Scholar](https://www.semanticscholar.org/)
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- [TensorFlow.js](https://www.tensorflow.org/js)
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app.py
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import joblib
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import pandas as pd
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import numpy as np
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from fastapi.responses import JSONResponse
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from fastapi.middleware.cors import CORSMiddleware
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from pydantic import BaseModel
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from typing import Optional
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import time
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import os
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#
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try:
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model_package = joblib.load(model_path)
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print("Model loaded successfully!")
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model = model_package['model']
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scaler = model_package['scaler']
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feature_names = model_package['feature_names']
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print(f"Model details: Type: {type(model)}")
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print(f"Number of features: {len(feature_names)}")
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except Exception as e:
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print(f"Error loading model: {e}")
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model_package = None
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# Create FastAPI app
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app = FastAPI(title="Parkinson's Disease Detection API")
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flo_hz: float
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jitter_percent: float
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jitter_abs: float
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rap: float
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ppq: float
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ddp: float
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shimmer: float
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shimmer_db: float
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apq3: float
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apq5: float
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apq: float
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dda: float
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nhr: float
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spread1: float
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spread2: float
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d2: float
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@app.post("/api/predict")
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async def predict_parkinsons(
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fo_hz: Optional[float] = Form(None),
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fhi_hz: Optional[float] = Form(None),
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flo_hz: Optional[float] = Form(None),
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jitter_percent: Optional[float] = Form(None),
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jitter_abs: Optional[float] = Form(None),
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rap: Optional[float] = Form(None),
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ppq: Optional[float] = Form(None),
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ddp: Optional[float] = Form(None),
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shimmer: Optional[float] = Form(None),
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shimmer_db: Optional[float] = Form(None),
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apq3: Optional[float] = Form(None),
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apq5: Optional[float] = Form(None),
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apq: Optional[float] = Form(None),
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dda: Optional[float] = Form(None),
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nhr: Optional[float] = Form(None),
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hnr: Optional[float] = Form(None),
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rpde: Optional[float] = Form(None),
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dfa: Optional[float] = Form(None),
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spread1: Optional[float] = Form(None),
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spread2: Optional[float] = Form(None),
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d2: Optional[float] = Form(None),
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ppe: Optional[float] = Form(None)
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start_time = time.time()
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}
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try:
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# Convert to DataFrame and ensure column order
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input_df = pd.DataFrame([input_data])
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input_df = input_df[feature_names] # Reorder columns to match training data
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# Standardize the input data
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input_scaled = scaler.transform(input_df)
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# Make prediction
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prediction = model.predict(input_scaled)[0]
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prediction_proba = model.predict_proba(input_scaled)[0]
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# Interpretation
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result = {
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"prediction": int(prediction),
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"prediction_label": "Parkinson's Disease" if prediction == 1 else "Healthy",
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"confidence": float(prediction_proba[int(prediction)]),
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"using_model": True,
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| 144 |
-
"execution_time_ms": (time.time() - start_time) * 1000,
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| 145 |
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"model_type": "SVM"
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| 146 |
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}
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| 148 |
except Exception as e:
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-
print("Error in prediction:
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|
| 174 |
return result
|
| 175 |
|
| 176 |
-
|
| 177 |
-
|
| 178 |
-
return {"message": "Parkinson's Disease Detection API is running! Use /api/predict endpoint for predictions."}
|
| 179 |
|
| 180 |
-
# Run the application
|
| 181 |
if __name__ == "__main__":
|
| 182 |
import uvicorn
|
| 183 |
uvicorn.run(app, host="0.0.0.0", port=7860)
|
|
|
|
| 1 |
+
import gradio as gr
|
|
|
|
|
|
|
| 2 |
import numpy as np
|
| 3 |
+
import pandas as pd
|
|
|
|
|
|
|
|
|
|
|
|
|
| 4 |
import time
|
| 5 |
+
import random
|
| 6 |
import os
|
| 7 |
+
import joblib
|
| 8 |
+
from sklearn.ensemble import RandomForestClassifier
|
| 9 |
+
from sklearn.preprocessing import StandardScaler
|
| 10 |
+
from fastapi import FastAPI, Query
|
| 11 |
+
from pydantic import BaseModel
|
| 12 |
+
from typing import Optional, List, Dict, Any, Union
|
| 13 |
|
| 14 |
+
# Define model paths - try both Hugging Face and local paths
|
| 15 |
+
hf_model_path = "/app/model.joblib"
|
| 16 |
+
local_model_path = "model.joblib"
|
| 17 |
+
current_dir_model_path = "./model.joblib"
|
| 18 |
+
relative_model_path = "hf-spaces/parkinsons-model/model.joblib"
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
| 19 |
|
| 20 |
+
print("Loading Parkinson's disease prediction model...")
|
| 21 |
+
# Try to load the model from various paths
|
| 22 |
+
for path in [hf_model_path, local_model_path, current_dir_model_path, relative_model_path]:
|
| 23 |
+
try:
|
| 24 |
+
if os.path.exists(path):
|
| 25 |
+
print(f"Found model at: {path}")
|
| 26 |
+
model_package = joblib.load(path)
|
| 27 |
+
model = model_package['model']
|
| 28 |
+
scaler = model_package['scaler']
|
| 29 |
+
feature_names = model_package.get('feature_names', [])
|
| 30 |
+
|
| 31 |
+
# Check if it's our model or the UCI Parkinson's dataset model
|
| 32 |
+
is_uci_model = len(feature_names) > 0 and 'MDVP:Fo(Hz)' in feature_names[0]
|
| 33 |
+
|
| 34 |
+
if is_uci_model:
|
| 35 |
+
print("Loaded UCI Parkinson's dataset model.")
|
| 36 |
+
else:
|
| 37 |
+
print("Loaded custom Parkinson's risk model.")
|
| 38 |
+
|
| 39 |
+
using_trained_model = True
|
| 40 |
+
print("Pre-trained model loaded successfully!")
|
| 41 |
+
break
|
| 42 |
+
except Exception as e:
|
| 43 |
+
print(f"Could not load model from {path}: {e}")
|
| 44 |
+
else:
|
| 45 |
+
# No model found, create a fallback
|
| 46 |
+
print("No model found. Creating fallback model.")
|
| 47 |
+
model = RandomForestClassifier(n_estimators=100, random_state=42)
|
| 48 |
+
using_trained_model = False
|
| 49 |
+
|
| 50 |
+
# Generate mock data for training
|
| 51 |
+
np.random.seed(42)
|
| 52 |
+
|
| 53 |
+
# Generate synthetic data
|
| 54 |
+
X_mock = pd.DataFrame({
|
| 55 |
+
'age': np.random.uniform(40, 85, 500),
|
| 56 |
+
'tremor': np.random.choice([0, 1], size=500, p=[0.3, 0.7]),
|
| 57 |
+
'stiffness': np.random.choice([0, 1], size=500, p=[0.4, 0.6]),
|
| 58 |
+
'balance_problems': np.random.choice([0, 1], size=500, p=[0.5, 0.5]),
|
| 59 |
+
'slow_movement': np.random.choice([0, 1], size=500, p=[0.4, 0.6]),
|
| 60 |
+
'sleep_issues': np.random.choice([0, 1], size=500, p=[0.7, 0.3]),
|
| 61 |
+
'tremor_severity': np.random.uniform(0, 10, 500),
|
| 62 |
+
'family_history': np.random.choice([0, 1], size=500, p=[0.8, 0.2]),
|
| 63 |
+
'symptom_duration': np.random.uniform(0, 60, 500),
|
| 64 |
+
'gender_Male': np.random.choice([0, 1], size=500)
|
| 65 |
+
})
|
| 66 |
+
|
| 67 |
+
# Create a simple rule-based target
|
| 68 |
+
prob = (X_mock['age'] > 70).astype(int) * 0.2 + \
|
| 69 |
+
X_mock['tremor'] * 0.2 + \
|
| 70 |
+
X_mock['stiffness'] * 0.15 + \
|
| 71 |
+
X_mock['balance_problems'] * 0.1 + \
|
| 72 |
+
X_mock['slow_movement'] * 0.2 + \
|
| 73 |
+
X_mock['gender_Male'] * 0.05 + \
|
| 74 |
+
X_mock['family_history'] * 0.1 + \
|
| 75 |
+
(X_mock['symptom_duration'] > 24).astype(int) * 0.1
|
| 76 |
+
|
| 77 |
+
y_mock = (prob > 0.5).astype(int)
|
| 78 |
+
|
| 79 |
+
# Fit the model
|
| 80 |
+
scaler = StandardScaler()
|
| 81 |
+
X_scaled = scaler.fit_transform(X_mock)
|
| 82 |
+
model.fit(X_scaled, y_mock)
|
| 83 |
+
feature_names = X_mock.columns.tolist()
|
| 84 |
|
| 85 |
+
print("Model loaded successfully!")
|
| 86 |
+
|
| 87 |
+
def calculate_risk_factors(data):
|
| 88 |
+
risk_factors = []
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 89 |
|
| 90 |
+
# Age is a risk factor
|
| 91 |
+
if data['age'] > 80:
|
| 92 |
+
risk_factors.append("Advanced age (80+)")
|
| 93 |
+
elif data['age'] > 65:
|
| 94 |
+
risk_factors.append("Senior age (65+)")
|
| 95 |
+
elif data['age'] > 55:
|
| 96 |
+
risk_factors.append("Higher age risk (55+)")
|
| 97 |
+
|
| 98 |
+
# Symptoms
|
| 99 |
+
if data['tremor'] == 1:
|
| 100 |
+
risk_factors.append("Presence of tremor")
|
| 101 |
+
|
| 102 |
+
if data['tremor_severity'] > 7:
|
| 103 |
+
risk_factors.append("Severe tremor")
|
| 104 |
+
elif data['tremor_severity'] > 4:
|
| 105 |
+
risk_factors.append("Moderate tremor")
|
| 106 |
+
|
| 107 |
+
if data['tremor_frequency'] == "constant":
|
| 108 |
+
risk_factors.append("Constant tremor")
|
| 109 |
+
elif data['tremor_frequency'] == "frequent":
|
| 110 |
+
risk_factors.append("Frequent tremor")
|
| 111 |
+
|
| 112 |
+
if data['stiffness'] == 1:
|
| 113 |
+
risk_factors.append("Muscle stiffness")
|
| 114 |
+
|
| 115 |
+
if data['balance_problems'] == 1:
|
| 116 |
+
risk_factors.append("Balance problems")
|
| 117 |
+
|
| 118 |
+
if data['slow_movement'] == 1:
|
| 119 |
+
risk_factors.append("Slowness of movement (bradykinesia)")
|
| 120 |
+
|
| 121 |
+
if data.get('sleep_issues', 0) == 1:
|
| 122 |
+
risk_factors.append("Sleep disturbances")
|
| 123 |
+
|
| 124 |
+
# Family history
|
| 125 |
+
if data['family_history'] == 1:
|
| 126 |
+
risk_factors.append("Family history of Parkinson's disease")
|
| 127 |
+
|
| 128 |
+
# Symptom duration
|
| 129 |
+
if data['symptom_duration'] > 36:
|
| 130 |
+
risk_factors.append("Long-standing symptoms (3+ years)")
|
| 131 |
+
elif data['symptom_duration'] > 12:
|
| 132 |
+
risk_factors.append("Sustained symptoms (1+ year)")
|
| 133 |
+
|
| 134 |
+
# Gender factor
|
| 135 |
+
if data['gender'] == "Male":
|
| 136 |
+
risk_factors.append("Male gender (higher risk)")
|
| 137 |
+
|
| 138 |
+
return risk_factors
|
| 139 |
+
|
| 140 |
+
def process_input_data(data):
|
| 141 |
+
# Create a feature vector from the input data
|
| 142 |
+
X_test = {
|
| 143 |
+
'age': float(data['age']),
|
| 144 |
+
'tremor': int(data['tremor']),
|
| 145 |
+
'stiffness': int(data['stiffness']),
|
| 146 |
+
'balance_problems': int(data['balance_problems']),
|
| 147 |
+
'slow_movement': int(data['slow_movement']),
|
| 148 |
+
'sleep_issues': int(data.get('sleep_issues', 0)),
|
| 149 |
+
'tremor_severity': float(data['tremor_severity']),
|
| 150 |
+
'family_history': int(data['family_history']),
|
| 151 |
+
'symptom_duration': float(data['symptom_duration']),
|
| 152 |
+
'gender_Male': 1 if data['gender'] == 'Male' else 0
|
| 153 |
}
|
| 154 |
|
| 155 |
+
# Convert to DataFrame for easy processing
|
| 156 |
+
X_test_df = pd.DataFrame([X_test])
|
| 157 |
+
|
| 158 |
+
# Scale the test data (use the appropriate scaler)
|
| 159 |
+
X_test_scaled = scaler.transform(X_test_df)
|
| 160 |
|
| 161 |
try:
|
| 162 |
+
# Get model predictions
|
| 163 |
+
prediction_proba = model.predict_proba(X_test_scaled)[0][1]
|
| 164 |
+
prediction_class = int(prediction_proba > 0.5)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 165 |
|
| 166 |
+
# Determine risk level
|
| 167 |
+
if prediction_proba > 0.6:
|
| 168 |
+
risk_level = "High Risk"
|
| 169 |
+
elif prediction_proba > 0.3:
|
| 170 |
+
risk_level = "Moderate Risk"
|
| 171 |
+
else:
|
| 172 |
+
risk_level = "Low Risk"
|
| 173 |
except Exception as e:
|
| 174 |
+
print(f"Error in prediction: {e}")
|
| 175 |
+
# Fallback to a simple calculation if the model fails
|
| 176 |
+
risk_score = sum([
|
| 177 |
+
1 if data['age'] > 70 else 0,
|
| 178 |
+
1 if data['tremor'] == 1 else 0,
|
| 179 |
+
1 if data['stiffness'] == 1 else 0,
|
| 180 |
+
1 if data['balance_problems'] == 1 else 0,
|
| 181 |
+
1 if data['slow_movement'] == 1 else 0,
|
| 182 |
+
1 if data['tremor_severity'] > 5 else 0,
|
| 183 |
+
1 if data['family_history'] == 1 else 0,
|
| 184 |
+
1 if data['symptom_duration'] > 12 else 0
|
| 185 |
+
])
|
| 186 |
|
| 187 |
+
prediction_proba = min(0.1 * risk_score, 0.95)
|
| 188 |
+
prediction_class = 1 if risk_score >= 4 else 0
|
| 189 |
|
| 190 |
+
if risk_score >= 5:
|
| 191 |
+
risk_level = "High Risk"
|
| 192 |
+
elif risk_score >= 3:
|
| 193 |
+
risk_level = "Moderate Risk"
|
| 194 |
+
else:
|
| 195 |
+
risk_level = "Low Risk"
|
| 196 |
+
|
| 197 |
+
# Calculate risk factors
|
| 198 |
+
risk_factors = calculate_risk_factors(data)
|
| 199 |
+
|
| 200 |
+
return {
|
| 201 |
+
"probability": float(prediction_proba),
|
| 202 |
+
"prediction": risk_level,
|
| 203 |
+
"parkinsons_prediction": prediction_class,
|
| 204 |
+
"using_model": using_trained_model, # Show whether we're using the trained model or mock
|
| 205 |
+
"risk_factors": risk_factors,
|
| 206 |
+
"execution_time_ms": int(random.uniform(50, 200)),
|
| 207 |
+
"model_version": "parkinsons-v1" if using_trained_model else "mock-model-v1"
|
| 208 |
+
}
|
| 209 |
+
|
| 210 |
+
def predict_parkinsons(gender, age, tremor, stiffness, balance_problems, slow_movement,
|
| 211 |
+
sleep_issues, tremor_severity, tremor_frequency, family_history,
|
| 212 |
+
symptom_duration):
|
| 213 |
+
# Simulate processing time
|
| 214 |
+
start_time = time.time()
|
| 215 |
+
|
| 216 |
+
# Format the input data
|
| 217 |
+
input_data = {
|
| 218 |
+
"gender": gender,
|
| 219 |
+
"age": age,
|
| 220 |
+
"tremor": 1 if tremor else 0,
|
| 221 |
+
"stiffness": 1 if stiffness else 0,
|
| 222 |
+
"balance_problems": 1 if balance_problems else 0,
|
| 223 |
+
"slow_movement": 1 if slow_movement else 0,
|
| 224 |
+
"sleep_issues": 1 if sleep_issues else 0,
|
| 225 |
+
"tremor_severity": tremor_severity,
|
| 226 |
+
"tremor_frequency": tremor_frequency,
|
| 227 |
+
"family_history": 1 if family_history else 0,
|
| 228 |
+
"symptom_duration": symptom_duration
|
| 229 |
+
}
|
| 230 |
+
|
| 231 |
+
# Process the data and get predictions
|
| 232 |
+
result = process_input_data(input_data)
|
| 233 |
+
|
| 234 |
+
# Update execution time
|
| 235 |
+
execution_time = (time.time() - start_time) * 1000
|
| 236 |
+
result["execution_time_ms"] = int(execution_time)
|
| 237 |
+
|
| 238 |
+
return result
|
| 239 |
+
|
| 240 |
+
def api_predict(
|
| 241 |
+
gender,
|
| 242 |
+
age,
|
| 243 |
+
tremor=0,
|
| 244 |
+
stiffness=0,
|
| 245 |
+
balance_problems=0,
|
| 246 |
+
slow_movement=0,
|
| 247 |
+
sleep_issues=0,
|
| 248 |
+
tremor_severity=0,
|
| 249 |
+
tremor_frequency="none",
|
| 250 |
+
family_history=0,
|
| 251 |
+
symptom_duration=0
|
| 252 |
+
):
|
| 253 |
+
# Convert string values to appropriate types
|
| 254 |
+
if isinstance(tremor, str):
|
| 255 |
+
tremor = int(tremor)
|
| 256 |
+
if isinstance(stiffness, str):
|
| 257 |
+
stiffness = int(stiffness)
|
| 258 |
+
if isinstance(balance_problems, str):
|
| 259 |
+
balance_problems = int(balance_problems)
|
| 260 |
+
if isinstance(slow_movement, str):
|
| 261 |
+
slow_movement = int(slow_movement)
|
| 262 |
+
if isinstance(sleep_issues, str):
|
| 263 |
+
sleep_issues = int(sleep_issues)
|
| 264 |
+
if isinstance(family_history, str):
|
| 265 |
+
family_history = int(family_history)
|
| 266 |
+
if isinstance(age, str):
|
| 267 |
+
age = float(age)
|
| 268 |
+
if isinstance(tremor_severity, str):
|
| 269 |
+
tremor_severity = float(tremor_severity)
|
| 270 |
+
if isinstance(symptom_duration, str):
|
| 271 |
+
symptom_duration = float(symptom_duration)
|
| 272 |
+
|
| 273 |
+
result = predict_parkinsons(
|
| 274 |
+
gender,
|
| 275 |
+
age,
|
| 276 |
+
bool(tremor),
|
| 277 |
+
bool(stiffness),
|
| 278 |
+
bool(balance_problems),
|
| 279 |
+
bool(slow_movement),
|
| 280 |
+
bool(sleep_issues),
|
| 281 |
+
tremor_severity,
|
| 282 |
+
tremor_frequency,
|
| 283 |
+
bool(family_history),
|
| 284 |
+
symptom_duration
|
| 285 |
+
)
|
| 286 |
+
|
| 287 |
+
return result
|
| 288 |
+
|
| 289 |
+
# Create Gradio interface
|
| 290 |
+
with gr.Blocks(title="Parkinson's Disease Prediction") as demo:
|
| 291 |
+
gr.Markdown("# Parkinson's Disease Risk Prediction")
|
| 292 |
+
gr.Markdown("Fill in the details below to assess Parkinson's disease risk factors.")
|
| 293 |
+
|
| 294 |
+
with gr.Row():
|
| 295 |
+
with gr.Column():
|
| 296 |
+
gender = gr.Radio(["Male", "Female"], label="Gender")
|
| 297 |
+
age = gr.Slider(30, 95, value=65, label="Age")
|
| 298 |
+
tremor = gr.Checkbox(label="Resting Tremor")
|
| 299 |
+
stiffness = gr.Checkbox(label="Muscle Stiffness")
|
| 300 |
+
balance_problems = gr.Checkbox(label="Balance Problems")
|
| 301 |
+
slow_movement = gr.Checkbox(label="Slowness of Movement (Bradykinesia)")
|
| 302 |
+
sleep_issues = gr.Checkbox(label="Sleep Disturbances")
|
| 303 |
+
tremor_severity = gr.Slider(0, 10, value=0, label="Tremor Severity (0-10)")
|
| 304 |
+
tremor_frequency = gr.Dropdown(
|
| 305 |
+
["none", "rare", "occasional", "frequent", "constant"],
|
| 306 |
+
label="Tremor Frequency",
|
| 307 |
+
value="none"
|
| 308 |
+
)
|
| 309 |
+
family_history = gr.Checkbox(label="Family History of Parkinson's")
|
| 310 |
+
symptom_duration = gr.Slider(0, 60, value=0, label="Symptom Duration (months)")
|
| 311 |
+
|
| 312 |
+
submit_btn = gr.Button("Predict Risk")
|
| 313 |
|
| 314 |
+
with gr.Column():
|
| 315 |
+
output = gr.JSON(label="Prediction Results")
|
| 316 |
+
|
| 317 |
+
with gr.Accordion("Model Info", open=True):
|
| 318 |
+
gr.Markdown(f"""
|
| 319 |
+
## Model Information
|
| 320 |
+
|
| 321 |
+
- Model status: {"Using trained model" if using_trained_model else "Using fallback model"}
|
| 322 |
+
- Model type: {type(model).__name__}
|
| 323 |
+
""")
|
| 324 |
+
|
| 325 |
+
with gr.Accordion("API Information", open=False):
|
| 326 |
+
gr.Markdown("""
|
| 327 |
+
## API Usage
|
| 328 |
+
|
| 329 |
+
This model can be accessed via API at `/api/predict` with the following parameters:
|
| 330 |
+
|
| 331 |
+
- `gender`: "Male" or "Female"
|
| 332 |
+
- `age`: Numerical age in years
|
| 333 |
+
- `tremor`: 0 or 1
|
| 334 |
+
- `stiffness`: 0 or 1
|
| 335 |
+
- `balance_problems`: 0 or 1
|
| 336 |
+
- `slow_movement`: 0 or 1
|
| 337 |
+
- `sleep_issues`: 0 or 1
|
| 338 |
+
- `tremor_severity`: 0-10
|
| 339 |
+
- `tremor_frequency`: "none", "rare", "occasional", "frequent", or "constant"
|
| 340 |
+
- `family_history`: 0 or 1
|
| 341 |
+
- `symptom_duration`: Duration in months
|
| 342 |
+
""")
|
| 343 |
+
|
| 344 |
+
submit_btn.click(
|
| 345 |
+
predict_parkinsons,
|
| 346 |
+
inputs=[
|
| 347 |
+
gender, age, tremor, stiffness, balance_problems, slow_movement,
|
| 348 |
+
sleep_issues, tremor_severity, tremor_frequency, family_history,
|
| 349 |
+
symptom_duration
|
| 350 |
+
],
|
| 351 |
+
outputs=output
|
| 352 |
+
)
|
| 353 |
+
|
| 354 |
+
# Mount the API endpoint
|
| 355 |
+
demo.queue()
|
| 356 |
+
app = gr.mount_gradio_app(app=gr.routes.App(), blocks=demo, path="/")
|
| 357 |
+
|
| 358 |
+
# Create a FastAPI app
|
| 359 |
+
from fastapi import FastAPI
|
| 360 |
+
from fastapi.middleware.cors import CORSMiddleware
|
| 361 |
+
|
| 362 |
+
# Initialize FastAPI
|
| 363 |
+
fastapi_app = FastAPI(title="Parkinson's Disease Prediction API")
|
| 364 |
+
|
| 365 |
+
# Add CORS middleware
|
| 366 |
+
fastapi_app.add_middleware(
|
| 367 |
+
CORSMiddleware,
|
| 368 |
+
allow_origins=["*"],
|
| 369 |
+
allow_credentials=True,
|
| 370 |
+
allow_methods=["*"],
|
| 371 |
+
allow_headers=["*"],
|
| 372 |
+
)
|
| 373 |
+
|
| 374 |
+
# Define the request model
|
| 375 |
+
class PredictionRequest(BaseModel):
|
| 376 |
+
gender: str
|
| 377 |
+
age: float
|
| 378 |
+
tremor: int = 0
|
| 379 |
+
stiffness: int = 0
|
| 380 |
+
balance_problems: int = 0
|
| 381 |
+
slow_movement: int = 0
|
| 382 |
+
sleep_issues: int = 0
|
| 383 |
+
tremor_severity: float = 0
|
| 384 |
+
tremor_frequency: str = "none"
|
| 385 |
+
family_history: int = 0
|
| 386 |
+
symptom_duration: float = 0
|
| 387 |
+
|
| 388 |
+
# Define the response model
|
| 389 |
+
class PredictionResponse(BaseModel):
|
| 390 |
+
probability: float
|
| 391 |
+
prediction: str
|
| 392 |
+
parkinsons_prediction: int
|
| 393 |
+
using_model: bool
|
| 394 |
+
risk_factors: List[str]
|
| 395 |
+
execution_time_ms: int
|
| 396 |
+
model_version: str
|
| 397 |
+
|
| 398 |
+
@fastapi_app.get("/api/predict", response_model=PredictionResponse)
|
| 399 |
+
async def predict_get(
|
| 400 |
+
gender: str = Query(..., description="Gender ('Male' or 'Female')"),
|
| 401 |
+
age: float = Query(..., description="Age in years"),
|
| 402 |
+
tremor: int = Query(0, description="Presence of tremor (0 or 1)"),
|
| 403 |
+
stiffness: int = Query(0, description="Muscle stiffness (0 or 1)"),
|
| 404 |
+
balance_problems: int = Query(0, description="Balance problems (0 or 1)"),
|
| 405 |
+
slow_movement: int = Query(0, description="Slowness of movement (0 or 1)"),
|
| 406 |
+
sleep_issues: int = Query(0, description="Sleep disturbances (0 or 1)"),
|
| 407 |
+
tremor_severity: float = Query(0, description="Tremor severity (0-10)"),
|
| 408 |
+
tremor_frequency: str = Query("none", description="Tremor frequency"),
|
| 409 |
+
family_history: int = Query(0, description="Family history of Parkinson's (0 or 1)"),
|
| 410 |
+
symptom_duration: float = Query(0, description="Symptom duration in months")
|
| 411 |
+
):
|
| 412 |
+
result = api_predict(
|
| 413 |
+
gender, age, tremor, stiffness, balance_problems, slow_movement,
|
| 414 |
+
sleep_issues, tremor_severity, tremor_frequency, family_history, symptom_duration
|
| 415 |
+
)
|
| 416 |
+
return result
|
| 417 |
+
|
| 418 |
+
@fastapi_app.post("/api/predict", response_model=PredictionResponse)
|
| 419 |
+
async def predict_post(request: PredictionRequest):
|
| 420 |
+
result = api_predict(
|
| 421 |
+
request.gender, request.age, request.tremor, request.stiffness,
|
| 422 |
+
request.balance_problems, request.slow_movement, request.sleep_issues,
|
| 423 |
+
request.tremor_severity, request.tremor_frequency, request.family_history,
|
| 424 |
+
request.symptom_duration
|
| 425 |
+
)
|
| 426 |
return result
|
| 427 |
|
| 428 |
+
# Mount the FastAPI app
|
| 429 |
+
app.mount("/", fastapi_app)
|
|
|
|
| 430 |
|
|
|
|
| 431 |
if __name__ == "__main__":
|
| 432 |
import uvicorn
|
| 433 |
uvicorn.run(app, host="0.0.0.0", port=7860)
|
model.joblib
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
size 18791
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:9b339816fef395f170b7a359a41222f73461fcb352a7b84f05c7e096a0aafa55
|
| 3 |
size 18791
|