| import pandas as pd |
| import joblib |
| from fastapi import FastAPI |
| import uvicorn |
| import numpy as np |
| import os |
|
|
| app = FastAPI() |
|
|
| def load_model(): |
| num_imputer_filepath = "numerical_imputer.joblib" |
| scaler_filepath = "scaler.joblib" |
| model_filepath = "lr_model.joblib" |
|
|
| num_imputer = joblib.load(num_imputer_filepath) |
| scaler = joblib.load(scaler_filepath) |
| model = joblib.load(model_filepath) |
|
|
| return num_imputer, scaler, model |
|
|
| def preprocess_input_data(input_data, num_imputer, scaler): |
| input_data_df = pd.DataFrame([input_data], index=[0]) |
| input_data_scaled = scaler.transform(input_data_df) |
| input_data_scaled = pd.DataFrame(input_data_scaled, columns=input_data_df.columns) |
| input_data_imputed = num_imputer.transform(input_data_scaled) |
|
|
| return input_data_imputed |
|
|
|
|
| @app.get("/") |
| def read_root(): |
| |
| info = """ |
| Welcome to the Sepsis Prediction API! π©Ίπ. This API provides advanced machine learning predictions for sepsis. β‘π For more information and to explore the API's capabilities, please visit the documentation: https://abubakari-sepsis-fastapi-prediction-app.hf.space/docs/ |
| """ |
| return info.strip() |
|
|
|
|
| @app.get("/sepsis/predict") |
| def predict_sepsis_endpoint(PRG: float, PL: float, PR: float, SK: float, TS: float, |
| M11: float, BD2: float, Age: float, Insurance: int): |
| num_imputer, scaler, model = load_model() |
|
|
| input_data = { |
| 'PRG': PRG, |
| 'PL': PL, |
| 'PR': PR, |
| 'SK': SK, |
| 'TS': TS, |
| 'M11': M11, |
| 'BD2': BD2, |
| 'Age': Age, |
| 'Insurance': Insurance |
| } |
|
|
| input_scaled_df = preprocess_input_data(input_data, num_imputer, scaler) |
|
|
| probabilities = model.predict_proba(input_scaled_df)[0] |
| prediction = np.argmax(probabilities) |
|
|
| sepsis_status = "Positive" if prediction == 1 else "Negative" |
| |
| probability = probabilities[1] if prediction == 1 else probabilities[0] |
|
|
| |
|
|
| if prediction == 1: |
| status_icon = "β" |
| sepsis_explanation = "Sepsis is a life-threatening condition caused by an infection. A positive prediction suggests that the patient might be exhibiting sepsis symptoms and requires immediate medical attention." |
| else: |
| status_icon = "β" |
| sepsis_explanation = "Sepsis is a life-threatening condition caused by an infection. A negative prediction suggests that the patient is not currently exhibiting sepsis symptoms." |
|
|
| statement = f"The patient's sepsis status is {sepsis_status} {status_icon} with a probability of {probability:.2f}. {sepsis_explanation}" |
|
|
| user_input_statement = "Please note this is the user-inputted data: " |
|
|
| output_df = pd.DataFrame([input_data]) |
|
|
| result = {'predicted_sepsis': sepsis_status, 'statement': statement, 'user_input_statement': user_input_statement, 'input_data_df': output_df.to_dict('records')} |
|
|
| return result |
|
|
| if __name__ == "__main__": |
| uvicorn.run(app, host="0.0.0.0", port=7860, reload=True) |
|
|