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Runtime error
Runtime error
plots that should work
Browse files
app.py
CHANGED
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@@ -5,7 +5,7 @@ import json
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import time
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import matplotlib.pyplot as plt
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import numpy as np
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import datetime
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import pytz
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import pandas as pd
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@@ -676,8 +676,6 @@ def get_data_default(time_scale, exp):
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client.unsubscribe(f"pioreactor/{PIOREACTOR}/readings")
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plots = [None, None, None, None]
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if temp_graph is not None:
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for temp in temp_graph:
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utc_time = datetime.strptime(temp["x"], "%Y-%m-%dT%H:%M:%S.%fZ")
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@@ -689,14 +687,14 @@ def get_data_default(time_scale, exp):
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df = df.set_index("x")
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plt.figure()
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plt.plot(df.index, df["
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plt.xlabel("Time")
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plt.ylabel("Temperature")
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plt.title("Temperature vs Time")
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plot1 = plt.gcf()
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plt.close()
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else:
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if od_graph is not None:
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for od in od_graph:
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@@ -707,10 +705,17 @@ def get_data_default(time_scale, exp):
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od["x"] = local_time.strftime("%Y-%m-%d %H:%M:%S")
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df = pd.DataFrame(od_graph)
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df = df.set_index("x")
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else:
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if norm_od_graph is not None:
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for od in norm_od_graph:
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@@ -722,9 +727,16 @@ def get_data_default(time_scale, exp):
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df = pd.DataFrame(norm_od_graph)
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df = df.set_index("x")
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else:
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if growth_rate_graph is not None:
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for gr in growth_rate_graph:
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@@ -735,12 +747,19 @@ def get_data_default(time_scale, exp):
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gr["x"] = local_time.strftime("%Y-%m-%d %H:%M:%S")
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df = pd.DataFrame(growth_rate_graph)
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df = df.set_index("x")
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else:
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# Define the interface components
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import time
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import matplotlib.pyplot as plt
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import numpy as np
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from datetime import datetime
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import pytz
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import pandas as pd
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client.unsubscribe(f"pioreactor/{PIOREACTOR}/readings")
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if temp_graph is not None:
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for temp in temp_graph:
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utc_time = datetime.strptime(temp["x"], "%Y-%m-%dT%H:%M:%S.%fZ")
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df = df.set_index("x")
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plt.figure()
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plt.plot(df.index, df["y"])
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plt.xlabel("Time")
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plt.ylabel("Temperature")
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plt.title("Temperature vs Time")
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plot1 = plt.gcf()
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plt.close()
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else:
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plot1 = None
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if od_graph is not None:
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for od in od_graph:
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od["x"] = local_time.strftime("%Y-%m-%d %H:%M:%S")
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df = pd.DataFrame(od_graph)
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df = df.set_index("x")
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plt.figure()
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plt.plot(df.index, df["y"])
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plt.xlabel("Time")
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plt.ylabel("OD")
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plt.title("OD vs Time")
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plot2 = plt.gcf()
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plt.close()
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else:
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plot2 = None
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if norm_od_graph is not None:
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for od in norm_od_graph:
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df = pd.DataFrame(norm_od_graph)
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df = df.set_index("x")
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plt.figure()
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plt.plot(df.index, df["y"])
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plt.xlabel("Time")
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plt.ylabel("Normalized OD")
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plt.title("Normalized OD vs Time")
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plot3 = plt.gcf()
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plt.close()
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else:
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plot3 = None
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if growth_rate_graph is not None:
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for gr in growth_rate_graph:
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gr["x"] = local_time.strftime("%Y-%m-%d %H:%M:%S")
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df = pd.DataFrame(growth_rate_graph)
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df = df.set_index("x")
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plt.figure()
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plt.plot(df.index, df["y"])
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plt.xlabel("Time")
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plt.ylabel("Growth Rate")
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plt.title("Growth Rate vs Time")
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plot4 = plt.gcf()
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plt.close()
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else:
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plot4 = None
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# Return both plots
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return plot1, plot2, plot3, plot4
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# Define the interface components
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