Spaces:
Sleeping
Sleeping
AdarshRajDS commited on
Commit ·
7d6580c
1
Parent(s): 4bb02cf
Use ConvNeXt multitask model and new checkpoint
Browse files- Dockerfile +1 -1
- app.py +19 -11
- best_convnext_multitask.pth +3 -0
- model.py +43 -2
Dockerfile
CHANGED
|
@@ -15,7 +15,7 @@ RUN pip install --no-cache-dir --upgrade pip && \
|
|
| 15 |
pip install --no-cache-dir -r requirements.txt
|
| 16 |
|
| 17 |
COPY *.py ./
|
| 18 |
-
COPY
|
| 19 |
|
| 20 |
EXPOSE 7860
|
| 21 |
|
|
|
|
| 15 |
pip install --no-cache-dir -r requirements.txt
|
| 16 |
|
| 17 |
COPY *.py ./
|
| 18 |
+
COPY best_convnext_multitask.pth ./
|
| 19 |
|
| 20 |
EXPOSE 7860
|
| 21 |
|
app.py
CHANGED
|
@@ -4,7 +4,7 @@ from PIL import Image
|
|
| 4 |
import torch, io
|
| 5 |
from torchvision import transforms
|
| 6 |
|
| 7 |
-
from model import MultiTaskResNet50
|
| 8 |
from decision import final_decision
|
| 9 |
from advanced_decision import (
|
| 10 |
mc_uncertainty,
|
|
@@ -14,7 +14,7 @@ from advanced_decision import (
|
|
| 14 |
from gradcam import GradCAM
|
| 15 |
from dino import load_dino, build_embeddings, similarity
|
| 16 |
|
| 17 |
-
app = FastAPI(title="Mold Detection API v2")
|
| 18 |
|
| 19 |
app.add_middleware(
|
| 20 |
CORSMiddleware,
|
|
@@ -24,15 +24,20 @@ app.add_middleware(
|
|
| 24 |
)
|
| 25 |
|
| 26 |
device = "cuda" if torch.cuda.is_available() else "cpu"
|
| 27 |
-
mold_idx = 4
|
| 28 |
|
| 29 |
# ------------------
|
| 30 |
-
# Load main model
|
| 31 |
# ------------------
|
| 32 |
-
|
| 33 |
-
model
|
| 34 |
-
|
| 35 |
-
)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 36 |
model.eval()
|
| 37 |
|
| 38 |
# ------------------
|
|
@@ -48,9 +53,12 @@ transform = transforms.Compose([
|
|
| 48 |
])
|
| 49 |
|
| 50 |
# ------------------
|
| 51 |
-
# Grad-CAM
|
| 52 |
-
#
|
| 53 |
-
|
|
|
|
|
|
|
|
|
|
| 54 |
|
| 55 |
# ------------------
|
| 56 |
# DINO (lazy loaded)
|
|
|
|
| 4 |
import torch, io
|
| 5 |
from torchvision import transforms
|
| 6 |
|
| 7 |
+
from model import MultiTaskResNet50, MultiTaskConvNeXt
|
| 8 |
from decision import final_decision
|
| 9 |
from advanced_decision import (
|
| 10 |
mc_uncertainty,
|
|
|
|
| 14 |
from gradcam import GradCAM
|
| 15 |
from dino import load_dino, build_embeddings, similarity
|
| 16 |
|
| 17 |
+
app = FastAPI(title="Mold Detection API v2 (ConvNeXt)")
|
| 18 |
|
| 19 |
app.add_middleware(
|
| 20 |
CORSMiddleware,
|
|
|
|
| 24 |
)
|
| 25 |
|
| 26 |
device = "cuda" if torch.cuda.is_available() else "cpu"
|
|
|
|
| 27 |
|
| 28 |
# ------------------
|
| 29 |
+
# Load main model (ConvNeXt)
|
| 30 |
# ------------------
|
| 31 |
+
# Expecting checkpoint with keys:
|
| 32 |
+
# - "model": state_dict
|
| 33 |
+
# - "classes": list of class names (length N, mold at some index)
|
| 34 |
+
ckpt = torch.load("best_convnext_multitask.pth", map_location=device)
|
| 35 |
+
classes = ckpt.get("classes") or []
|
| 36 |
+
num_classes = len(classes) if classes else 9
|
| 37 |
+
mold_idx = classes.index("mold") if classes else 4
|
| 38 |
+
|
| 39 |
+
model = MultiTaskConvNeXt(num_classes).to(device)
|
| 40 |
+
model.load_state_dict(ckpt["model"])
|
| 41 |
model.eval()
|
| 42 |
|
| 43 |
# ------------------
|
|
|
|
| 53 |
])
|
| 54 |
|
| 55 |
# ------------------
|
| 56 |
+
# Grad-CAM (use exposed last_conv from ConvNeXt wrapper)
|
| 57 |
+
# If missing, fall back to a reasonable conv layer
|
| 58 |
+
target_layer = getattr(model, "last_conv", None)
|
| 59 |
+
if target_layer is None:
|
| 60 |
+
target_layer = model.backbone.features[-1].block[-1].dwconv
|
| 61 |
+
gradcam = GradCAM(model, target_layer)
|
| 62 |
|
| 63 |
# ------------------
|
| 64 |
# DINO (lazy loaded)
|
best_convnext_multitask.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:fb0e73f75e0b9fbc2a548dec97791598d99b67791eec44d2aa35053f1e27e342
|
| 3 |
+
size 350441583
|
model.py
CHANGED
|
@@ -2,6 +2,7 @@ import torch
|
|
| 2 |
import torch.nn as nn
|
| 3 |
from torchvision import models
|
| 4 |
|
|
|
|
| 5 |
class MultiTaskResNet50(nn.Module):
|
| 6 |
def __init__(self, num_classes=9):
|
| 7 |
super().__init__()
|
|
@@ -11,10 +12,50 @@ class MultiTaskResNet50(nn.Module):
|
|
| 11 |
self.class_head = nn.Linear(feat_dim, num_classes)
|
| 12 |
self.bio_head = nn.Linear(feat_dim, 2)
|
| 13 |
|
| 14 |
-
def forward(self, x):
|
| 15 |
feats = self.backbone(x)
|
| 16 |
return {
|
| 17 |
"class": self.class_head(feats),
|
| 18 |
-
"bio": self.bio_head(feats)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
}
|
| 20 |
|
|
|
|
|
|
| 2 |
import torch.nn as nn
|
| 3 |
from torchvision import models
|
| 4 |
|
| 5 |
+
|
| 6 |
class MultiTaskResNet50(nn.Module):
|
| 7 |
def __init__(self, num_classes=9):
|
| 8 |
super().__init__()
|
|
|
|
| 12 |
self.class_head = nn.Linear(feat_dim, num_classes)
|
| 13 |
self.bio_head = nn.Linear(feat_dim, 2)
|
| 14 |
|
| 15 |
+
def forward(self, x: torch.Tensor):
|
| 16 |
feats = self.backbone(x)
|
| 17 |
return {
|
| 18 |
"class": self.class_head(feats),
|
| 19 |
+
"bio": self.bio_head(feats),
|
| 20 |
+
}
|
| 21 |
+
|
| 22 |
+
|
| 23 |
+
class MultiTaskConvNeXt(nn.Module):
|
| 24 |
+
"""
|
| 25 |
+
ConvNeXt-Base backbone with two heads:
|
| 26 |
+
- N-class structural/mold classifier
|
| 27 |
+
- 2-class biological vs non-biological head
|
| 28 |
+
|
| 29 |
+
Mirrors the training setup from the ConvNeXt Kaggle notebook.
|
| 30 |
+
"""
|
| 31 |
+
|
| 32 |
+
def __init__(self, num_classes: int):
|
| 33 |
+
super().__init__()
|
| 34 |
+
|
| 35 |
+
# We load task-specific weights, so no ImageNet weights here.
|
| 36 |
+
self.backbone = models.convnext_base(weights=None)
|
| 37 |
+
|
| 38 |
+
# ConvNeXt classifier is [LayerNorm2d, Flatten, Linear]
|
| 39 |
+
feat_dim = self.backbone.classifier[2].in_features
|
| 40 |
+
self.backbone.classifier = nn.Identity()
|
| 41 |
+
|
| 42 |
+
self.pool = nn.AdaptiveAvgPool2d((1, 1))
|
| 43 |
+
self.class_head = nn.Linear(feat_dim, num_classes)
|
| 44 |
+
self.bio_head = nn.Linear(feat_dim, 2)
|
| 45 |
+
self.dropout = nn.Dropout(p=0.1)
|
| 46 |
+
|
| 47 |
+
# Expose a sensible last conv layer ref for Grad-CAM usage.
|
| 48 |
+
self.last_conv = self.backbone.features[-1].block[-1].dwconv
|
| 49 |
+
|
| 50 |
+
def forward(self, x: torch.Tensor):
|
| 51 |
+
feats = self.backbone.features(x)
|
| 52 |
+
feats = self.pool(feats)
|
| 53 |
+
feats = torch.flatten(feats, 1)
|
| 54 |
+
feats = self.dropout(feats)
|
| 55 |
+
|
| 56 |
+
return {
|
| 57 |
+
"class": self.class_head(feats),
|
| 58 |
+
"bio": self.bio_head(feats),
|
| 59 |
}
|
| 60 |
|
| 61 |
+
|