Spaces:
Running
on
Zero
Running
on
Zero
Refactor app.py: update demo description, enhance PDF handling, and improve model loading functions
Browse files
app.py
CHANGED
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@@ -1,28 +1,22 @@
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"""
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This script creates a Gradio interface for testing both BiGemma3 and ColGemma3 models
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with PDF document upload, automatic conversion to images, and query-based retrieval.
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Features:
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- PDF upload with automatic conversion to images
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- Model selection: NetraEmbed (BiGemma3), ColNetraEmbed (ColGemma3), or Both
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- Query input with top-k selection (default: 5)
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- Similarity score display
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- Side-by-side comparison when both models are selected
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- ZeroGPU integration for efficient GPU usage
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"""
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import gradio as gr
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import torch
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import spaces
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from pdf2image import convert_from_path
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from PIL import Image
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import matplotlib.pyplot as plt
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import numpy as np
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import seaborn as sns
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@@ -33,8 +27,6 @@ from colpali_engine.models import BiGemma3, BiGemmaProcessor3, ColGemma3, ColGem
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from colpali_engine.interpretability import get_similarity_maps_from_embeddings
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from colpali_engine.interpretability.similarity_map_utils import normalize_similarity_map
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# Configuration
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MAX_BATCH_SIZE = 32 # Maximum pages to process at once
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device = "cuda" if torch.cuda.is_available() else "cpu"
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print(f"Device: {device}")
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@@ -54,146 +46,144 @@ class DocumentIndex:
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doc_index = DocumentIndex()
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# Helper functions
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def pdf_to_images(pdf_path: str) -> List[Image.Image]:
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"""Convert PDF to list of PIL Images with error handling."""
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try:
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print(f"Converting PDF to images: {pdf_path}")
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images = convert_from_path(pdf_path, dpi=200)
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print(f"Converted {len(images)} pages")
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return images
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except Exception as e:
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print(f"β PDF conversion error: {str(e)}")
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raise gr.Error(f"Failed to convert PDF: {str(e)}")
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@spaces.GPU
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def load_bigemma_model():
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"""Load BiGemma3 model and processor."""
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if doc_index.bigemma_model is None:
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print("Loading BiGemma3 (NetraEmbed)...")
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except Exception as e:
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print(f"β Failed to load BiGemma3: {str(e)}")
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raise gr.Error(f"Failed to load BiGemma3: {str(e)}")
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return "β
BiGemma3 loaded"
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@spaces.GPU
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def load_colgemma_model():
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"""Load ColGemma3 model and processor."""
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if doc_index.colgemma_model is None:
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print("Loading ColGemma3 (ColNetraEmbed)...")
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try:
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)
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doc_index.colgemma_model.eval()
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doc_index.colgemma_processor = ColGemmaProcessor3.from_pretrained(
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"Cognitive-Lab/ColNetraEmbed",
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use_fast=True,
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)
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print("β ColGemma3 loaded successfully")
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except Exception as e:
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print(f"β
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raise gr.Error(f"Failed to
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def unload_models():
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"""Unload models and free GPU memory."""
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try:
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if doc_index.bigemma_model is not None:
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del doc_index.bigemma_model
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del doc_index.bigemma_processor
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doc_index.bigemma_model = None
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doc_index.bigemma_processor = None
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if doc_index.colgemma_model is not None:
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del doc_index.colgemma_model
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del doc_index.colgemma_processor
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doc_index.colgemma_model = None
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doc_index.colgemma_processor = None
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# Clear embeddings and images
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doc_index.bigemma_embeddings = None
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doc_index.colgemma_embeddings = None
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doc_index.images = []
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# Force garbage collection
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gc.collect()
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if torch.cuda.is_available():
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torch.cuda.empty_cache()
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torch.cuda.synchronize()
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return "β
Models unloaded and GPU memory cleared"
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except Exception as e:
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return f"β Error unloading models: {str(e)}"
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@spaces.GPU
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def index_bigemma_images(images: List[Image.Image])
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"""Index images with BiGemma3
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model, processor = doc_index.bigemma_model, doc_index.bigemma_processor
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batch_images = processor.process_images(images).to(device)
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embeddings = model(**batch_images, embedding_dim=768)
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return embeddings
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@spaces.GPU
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def index_colgemma_images(images: List[Image.Image])
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"""Index images with ColGemma3
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batch_images = processor.process_images(images).to(device)
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embeddings = model(**batch_images)
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return embeddings
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try:
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# Convert
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num_pages = len(doc_index.images)
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if num_pages > MAX_BATCH_SIZE:
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status.append(f"β οΈ Large PDF ({num_pages} pages). Processing in batches...")
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# Index with BiGemma3
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if model_choice in ["NetraEmbed (BiGemma3)", "Both"]:
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doc_index.bigemma_embeddings = index_bigemma_images(doc_index.images)
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# Index with ColGemma3
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if model_choice in ["ColNetraEmbed (ColGemma3)", "Both"]:
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doc_index.colgemma_embeddings = index_colgemma_images(doc_index.images)
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except Exception as e:
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import traceback
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print(f"Indexing error: {error_details}")
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return f"β Error indexing document: {str(e)}"
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@spaces.GPU
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def generate_colgemma_heatmap(
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image: Image.Image,
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query: str,
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query_embedding: torch.Tensor,
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image_embedding: torch.Tensor,
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model,
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processor,
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) -> Image.Image:
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"""Generate heatmap overlay for ColGemma3 results."""
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try:
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batch_images = processor.process_images([image]).to(device)
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# Create image mask
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if "input_ids" in batch_images and hasattr(model.config, "image_token_id"):
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image_token_id = model.config.image_token_id
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image_mask = batch_images["input_ids"] == image_token_id
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else:
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image_mask = torch.ones(
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image_embedding.shape[0], image_embedding.shape[1],
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)
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# Calculate n_patches
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num_image_tokens = image_mask.sum().item()
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n_side = int(math.sqrt(num_image_tokens))
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if n_side * n_side == num_image_tokens:
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n_patches = (n_side, n_side)
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else:
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n_patches = (16, 16)
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# Generate similarity maps
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similarity_maps_list = get_similarity_maps_from_embeddings(
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image_embeddings=image_embedding,
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query_embeddings=query_embedding,
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n_patches=n_patches,
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image_mask=image_mask,
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)
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similarity_map = similarity_maps_list[0]
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# Aggregate across all query tokens
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if similarity_map.dtype == torch.bfloat16:
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similarity_map = similarity_map.float()
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aggregated_map = torch.mean(similarity_map, dim=0)
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#
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img_array = np.array(image.convert("RGBA"))
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# Normalize the similarity map
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similarity_map_array = normalize_similarity_map(aggregated_map).to(torch.float32).cpu().numpy()
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similarity_map_array = rearrange(similarity_map_array, "h w -> w h")
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# Create PIL image from similarity map
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similarity_map_image = Image.fromarray((similarity_map_array * 255).astype("uint8")).resize(
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image.size, Image.Resampling.BICUBIC
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)
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# Create matplotlib figure
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ax.imshow(img_array)
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ax.imshow(
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similarity_map_image,
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print(f"β Heatmap generation error: {str(e)}")
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return image
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@spaces.GPU
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def query_bigemma(query: str, top_k: int) -> Tuple[str, List]:
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"""Query indexed documents with BiGemma3."""
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# Ensure model is loaded
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if doc_index.bigemma_model is None:
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load_bigemma_model()
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model, processor = doc_index.bigemma_model, doc_index.bigemma_processor
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# Encode query
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batch_query = processor.process_texts([query]).to(device)
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query_embedding = model(**batch_query, embedding_dim=768)
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# Compute scores
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scores = processor.score(qs=query_embedding, ps=doc_index.bigemma_embeddings)
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# Get top-k results
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top_k_actual = min(top_k, len(doc_index.images))
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top_indices = scores[0].argsort(descending=True)[:top_k_actual]
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# Format results
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results_text = "### BiGemma3 (NetraEmbed) Results\n\n"
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gallery_images = []
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for rank, idx in enumerate(top_indices):
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score = scores[0, idx].item()
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results_text += f"**Rank {rank + 1}:** Page {idx.item() + 1} - Score: {score:.4f}\n"
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gallery_images.append(
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(doc_index.images[idx.item()], f"Rank {rank + 1} - Page {idx.item() + 1} (Score: {score:.4f})")
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)
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return results_text, gallery_images
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@spaces.GPU
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def query_colgemma(query: str, top_k: int, show_heatmap: bool = False) -> Tuple[str, List]:
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"""Query indexed documents with ColGemma3."""
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# Ensure model is loaded
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if doc_index.colgemma_model is None:
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load_colgemma_model()
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model, processor = doc_index.colgemma_model, doc_index.colgemma_processor
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# Encode query
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batch_query = processor.process_queries([query]).to(device)
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query_embedding = model(**batch_query)
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# Compute scores
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scores = processor.score_multi_vector(qs=query_embedding, ps=doc_index.colgemma_embeddings)
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# Get top-k results
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top_k_actual = min(top_k, len(doc_index.images))
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top_indices = scores[0].argsort(descending=True)[:top_k_actual]
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# Format results
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results_text = "### ColGemma3 (ColNetraEmbed) Results\n\n"
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gallery_images = []
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for rank, idx in enumerate(top_indices):
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score = scores[0, idx].item()
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results_text += f"**Rank {rank + 1}:** Page {idx.item() + 1} - Score: {score:.2f}\n"
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# Generate heatmap if requested
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if show_heatmap:
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heatmap_image = generate_colgemma_heatmap(
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image=doc_index.images[idx.item()],
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query=query,
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query_embedding=query_embedding,
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image_embedding=doc_index.colgemma_embeddings[idx.item()].unsqueeze(0),
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model=model,
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processor=processor,
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)
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gallery_images.append(
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(heatmap_image, f"Rank {rank + 1} - Page {idx.item() + 1} (Score: {score:.2f})")
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else:
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gallery_images.append(
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(doc_index.images[idx.item()], f"Rank {rank + 1} - Page {idx.item() + 1} (Score: {score:.2f})")
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return results_text, gallery_images
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def query_documents(
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query: str, model_choice: str, top_k: int, show_heatmap: bool = False
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) -> Tuple[Optional[
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"""Query the indexed documents."""
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if not doc_index.images:
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return "β οΈ Please upload and index a document first.", None, None
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if not query.strip():
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return "β οΈ Please enter a query.", None, None
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try:
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# Query with BiGemma3
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if model_choice in ["NetraEmbed (BiGemma3)", "Both"]:
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if doc_index.bigemma_embeddings is None:
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return "β οΈ Please index the document with BiGemma3 first.", None, None
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# Query with ColGemma3
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if model_choice in ["ColNetraEmbed (ColGemma3)", "Both"]:
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if doc_index.colgemma_embeddings is None:
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return "β οΈ Please index the document with ColGemma3 first.", None, None
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# Return results based on model choice
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if model_choice == "NetraEmbed (BiGemma3)":
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-
return
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elif model_choice == "ColNetraEmbed (ColGemma3)":
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return
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else: # Both
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-
return
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except Exception as e:
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import traceback
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error_details = traceback.format_exc()
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print(f"Query error: {error_details}")
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return f"β Error during query: {str(e)}", None, None
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# Create Gradio interface
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with gr.Blocks(title="NetraEmbed Demo") as demo:
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# Header section
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gr.
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with gr.Row():
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# Column 1: Model
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with gr.Column(scale=1):
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gr.Markdown("### π€ Model
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model_select = gr.Radio(
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choices=["NetraEmbed (BiGemma3)", "ColNetraEmbed (ColGemma3)", "Both"],
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value="Both",
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label="Select Model(s)",
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)
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query_input = gr.Textbox(
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label="Enter Query",
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placeholder="e.g., financial report, organizational structure...",
|
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lines=2,
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)
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with gr.Row():
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top_k_slider = gr.Slider(
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gr.Markdown("---")
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|
| 473 |
# Results section
|
| 474 |
-
gr.
|
| 475 |
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with gr.Row():
|
| 476 |
with gr.Column(scale=1):
|
| 477 |
-
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| 478 |
bigemma_gallery = gr.Gallery(
|
| 479 |
label="BiGemma3 - Top Retrieved Pages",
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| 480 |
columns=2,
|
| 481 |
height="auto",
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| 482 |
)
|
| 483 |
with gr.Column(scale=1):
|
| 484 |
-
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| 485 |
colgemma_gallery = gr.Gallery(
|
| 486 |
label="ColGemma3 - Top Retrieved Pages",
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| 487 |
columns=2,
|
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height="auto",
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)
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| 491 |
# Event handlers
|
| 492 |
index_btn.click(
|
| 493 |
fn=index_document,
|
|
@@ -498,8 +531,11 @@ with gr.Blocks(title="NetraEmbed Demo") as demo:
|
|
| 498 |
query_btn.click(
|
| 499 |
fn=query_documents,
|
| 500 |
inputs=[query_input, model_select, top_k_slider, heatmap_checkbox],
|
| 501 |
-
outputs=[
|
| 502 |
)
|
| 503 |
|
| 504 |
-
#
|
| 505 |
-
demo.
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|
| 1 |
"""
|
| 2 |
+
NetraEmbed Demo - Document Retrieval with BiGemma3 and ColGemma3
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| 3 |
|
| 4 |
+
This demo allows you to:
|
| 5 |
+
1. Select a model (NetraEmbed, ColNetraEmbed, or Both)
|
| 6 |
+
2. Upload PDF files and index them
|
| 7 |
+
3. Search for relevant pages based on your query
|
| 8 |
+
|
| 9 |
+
HuggingFace Spaces deployment with ZeroGPU support.
|
| 10 |
+
"""
|
| 11 |
|
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|
| 12 |
import spaces
|
| 13 |
+
import torch
|
| 14 |
+
import gradio as gr
|
| 15 |
from pdf2image import convert_from_path
|
| 16 |
from PIL import Image
|
| 17 |
+
from typing import List, Tuple, Optional
|
| 18 |
+
import math
|
| 19 |
+
import io
|
| 20 |
import matplotlib.pyplot as plt
|
| 21 |
import numpy as np
|
| 22 |
import seaborn as sns
|
|
|
|
| 27 |
from colpali_engine.interpretability import get_similarity_maps_from_embeddings
|
| 28 |
from colpali_engine.interpretability.similarity_map_utils import normalize_similarity_map
|
| 29 |
|
|
|
|
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|
|
| 30 |
device = "cuda" if torch.cuda.is_available() else "cpu"
|
| 31 |
|
| 32 |
print(f"Device: {device}")
|
|
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|
| 46 |
|
| 47 |
doc_index = DocumentIndex()
|
| 48 |
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|
| 49 |
|
| 50 |
@spaces.GPU
|
| 51 |
def load_bigemma_model():
|
| 52 |
"""Load BiGemma3 model and processor."""
|
| 53 |
if doc_index.bigemma_model is None:
|
| 54 |
print("Loading BiGemma3 (NetraEmbed)...")
|
| 55 |
+
doc_index.bigemma_processor = BiGemmaProcessor3.from_pretrained(
|
| 56 |
+
"Cognitive-Lab/NetraEmbed",
|
| 57 |
+
use_fast=True,
|
| 58 |
+
)
|
| 59 |
+
doc_index.bigemma_model = BiGemma3.from_pretrained(
|
| 60 |
+
"Cognitive-Lab/NetraEmbed",
|
| 61 |
+
torch_dtype=torch.bfloat16,
|
| 62 |
+
device_map=device,
|
| 63 |
+
).eval()
|
| 64 |
+
print("β BiGemma3 loaded successfully")
|
| 65 |
+
return doc_index.bigemma_model, doc_index.bigemma_processor
|
| 66 |
+
|
|
|
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|
|
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|
|
|
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|
|
| 67 |
|
| 68 |
@spaces.GPU
|
| 69 |
def load_colgemma_model():
|
| 70 |
"""Load ColGemma3 model and processor."""
|
| 71 |
if doc_index.colgemma_model is None:
|
| 72 |
print("Loading ColGemma3 (ColNetraEmbed)...")
|
| 73 |
+
doc_index.colgemma_model = ColGemma3.from_pretrained(
|
| 74 |
+
"Cognitive-Lab/ColNetraEmbed",
|
| 75 |
+
dtype=torch.bfloat16,
|
| 76 |
+
device_map=device,
|
| 77 |
+
).eval()
|
| 78 |
+
doc_index.colgemma_processor = ColGemmaProcessor3.from_pretrained(
|
| 79 |
+
"Cognitive-Lab/ColNetraEmbed",
|
| 80 |
+
use_fast=True,
|
| 81 |
+
)
|
| 82 |
+
print("β ColGemma3 loaded successfully")
|
| 83 |
+
return doc_index.colgemma_model, doc_index.colgemma_processor
|
| 84 |
+
|
| 85 |
+
|
| 86 |
+
def pdf_to_images(pdf_paths: List[str]) -> List[Image.Image]:
|
| 87 |
+
"""Convert PDF files to list of PIL Images."""
|
| 88 |
+
images = []
|
| 89 |
+
for pdf_path in pdf_paths:
|
| 90 |
try:
|
| 91 |
+
print(f"Converting PDF to images: {pdf_path}")
|
| 92 |
+
page_images = convert_from_path(pdf_path, dpi=200)
|
| 93 |
+
images.extend(page_images)
|
| 94 |
+
print(f"Converted {len(page_images)} pages from {pdf_path}")
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 95 |
except Exception as e:
|
| 96 |
+
print(f"β PDF conversion error for {pdf_path}: {str(e)}")
|
| 97 |
+
raise gr.Error(f"Failed to convert PDF: {str(e)}")
|
| 98 |
+
|
| 99 |
+
if len(images) >= 150:
|
| 100 |
+
raise gr.Error("The number of images should be less than 150.")
|
| 101 |
+
|
| 102 |
+
return images
|
| 103 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 104 |
|
| 105 |
@spaces.GPU
|
| 106 |
+
def index_bigemma_images(images: List[Image.Image]):
|
| 107 |
+
"""Index images with BiGemma3."""
|
| 108 |
+
model, processor = load_bigemma_model()
|
| 109 |
+
|
| 110 |
+
print(f"Indexing {len(images)} images with BiGemma3...")
|
| 111 |
+
embeddings_list = []
|
| 112 |
+
|
| 113 |
+
# Process in smaller batches to avoid memory issues
|
| 114 |
+
batch_size = 2
|
| 115 |
+
for i in range(0, len(images), batch_size):
|
| 116 |
+
batch = images[i:i+batch_size]
|
| 117 |
+
batch_images = processor.process_images(batch).to(device)
|
| 118 |
+
|
| 119 |
+
with torch.no_grad():
|
| 120 |
+
embeddings = model(**batch_images, embedding_dim=768)
|
| 121 |
+
embeddings_list.append(embeddings.cpu())
|
| 122 |
+
|
| 123 |
+
# Concatenate all embeddings
|
| 124 |
+
all_embeddings = torch.cat(embeddings_list, dim=0)
|
| 125 |
+
print(f"β Indexed {len(images)} pages with BiGemma3 (shape: {all_embeddings.shape})")
|
| 126 |
+
|
| 127 |
+
return all_embeddings
|
| 128 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 129 |
|
| 130 |
@spaces.GPU
|
| 131 |
+
def index_colgemma_images(images: List[Image.Image]):
|
| 132 |
+
"""Index images with ColGemma3."""
|
| 133 |
+
model, processor = load_colgemma_model()
|
| 134 |
+
|
| 135 |
+
print(f"Indexing {len(images)} images with ColGemma3...")
|
| 136 |
+
embeddings_list = []
|
| 137 |
+
|
| 138 |
+
# Process in smaller batches to avoid memory issues
|
| 139 |
+
batch_size = 2
|
| 140 |
+
for i in range(0, len(images), batch_size):
|
| 141 |
+
batch = images[i:i+batch_size]
|
| 142 |
+
batch_images = processor.process_images(batch).to(device)
|
| 143 |
+
|
| 144 |
+
with torch.no_grad():
|
| 145 |
+
embeddings = model(**batch_images)
|
| 146 |
+
embeddings_list.append(embeddings.cpu())
|
| 147 |
+
|
| 148 |
+
# Concatenate all embeddings
|
| 149 |
+
all_embeddings = torch.cat(embeddings_list, dim=0)
|
| 150 |
+
print(f"β Indexed {len(images)} pages with ColGemma3 (shape: {all_embeddings.shape})")
|
| 151 |
|
| 152 |
+
return all_embeddings
|
|
|
|
|
|
|
|
|
|
| 153 |
|
| 154 |
+
|
| 155 |
+
def index_document(pdf_files, model_choice: str) -> str:
|
| 156 |
+
"""Upload and index PDF documents."""
|
| 157 |
+
if not pdf_files:
|
| 158 |
+
return "β οΈ Please upload PDF documents first."
|
| 159 |
+
|
| 160 |
+
if not model_choice:
|
| 161 |
+
return "β οΈ Please select a model first."
|
| 162 |
|
| 163 |
try:
|
| 164 |
+
status_messages = []
|
| 165 |
|
| 166 |
+
# Convert PDFs to images
|
| 167 |
+
status_messages.append("β³ Converting PDFs to images...")
|
| 168 |
+
pdf_paths = [f.name for f in pdf_files]
|
| 169 |
+
doc_index.images = pdf_to_images(pdf_paths)
|
| 170 |
num_pages = len(doc_index.images)
|
| 171 |
+
status_messages.append(f"β Converted to {num_pages} images")
|
|
|
|
|
|
|
|
|
|
| 172 |
|
| 173 |
# Index with BiGemma3
|
| 174 |
if model_choice in ["NetraEmbed (BiGemma3)", "Both"]:
|
| 175 |
+
status_messages.append("β³ Indexing with BiGemma3...")
|
| 176 |
doc_index.bigemma_embeddings = index_bigemma_images(doc_index.images)
|
| 177 |
+
status_messages.append("β Indexed with BiGemma3")
|
| 178 |
|
| 179 |
# Index with ColGemma3
|
| 180 |
if model_choice in ["ColNetraEmbed (ColGemma3)", "Both"]:
|
| 181 |
+
status_messages.append("β³ Indexing with ColGemma3...")
|
| 182 |
doc_index.colgemma_embeddings = index_colgemma_images(doc_index.images)
|
| 183 |
+
status_messages.append("β Indexed with ColGemma3")
|
| 184 |
|
| 185 |
+
final_status = "\n".join(status_messages) + "\n\nβ
Document ready for querying!"
|
| 186 |
+
return final_status
|
| 187 |
|
| 188 |
except Exception as e:
|
| 189 |
import traceback
|
|
|
|
| 191 |
print(f"Indexing error: {error_details}")
|
| 192 |
return f"β Error indexing document: {str(e)}"
|
| 193 |
|
| 194 |
+
|
| 195 |
@spaces.GPU
|
| 196 |
def generate_colgemma_heatmap(
|
| 197 |
image: Image.Image,
|
|
|
|
| 198 |
query_embedding: torch.Tensor,
|
| 199 |
image_embedding: torch.Tensor,
|
|
|
|
|
|
|
| 200 |
) -> Image.Image:
|
| 201 |
"""Generate heatmap overlay for ColGemma3 results."""
|
| 202 |
try:
|
| 203 |
+
model, processor = load_colgemma_model()
|
| 204 |
+
|
| 205 |
+
# Re-process the single image
|
| 206 |
batch_images = processor.process_images([image]).to(device)
|
| 207 |
|
| 208 |
+
# Create image mask
|
| 209 |
if "input_ids" in batch_images and hasattr(model.config, "image_token_id"):
|
| 210 |
image_token_id = model.config.image_token_id
|
| 211 |
image_mask = batch_images["input_ids"] == image_token_id
|
| 212 |
else:
|
| 213 |
image_mask = torch.ones(
|
| 214 |
+
image_embedding.shape[0], image_embedding.shape[1],
|
| 215 |
+
dtype=torch.bool, device=device
|
| 216 |
)
|
| 217 |
|
| 218 |
+
# Calculate n_patches
|
| 219 |
num_image_tokens = image_mask.sum().item()
|
| 220 |
n_side = int(math.sqrt(num_image_tokens))
|
| 221 |
+
n_patches = (n_side, n_side) if n_side * n_side == num_image_tokens else (16, 16)
|
|
|
|
|
|
|
|
|
|
|
|
|
| 222 |
|
| 223 |
# Generate similarity maps
|
| 224 |
similarity_maps_list = get_similarity_maps_from_embeddings(
|
| 225 |
+
image_embeddings=image_embedding.unsqueeze(0).to(device),
|
| 226 |
+
query_embeddings=query_embedding.to(device),
|
| 227 |
n_patches=n_patches,
|
| 228 |
image_mask=image_mask,
|
| 229 |
)
|
| 230 |
|
| 231 |
similarity_map = similarity_maps_list[0]
|
|
|
|
|
|
|
| 232 |
if similarity_map.dtype == torch.bfloat16:
|
| 233 |
similarity_map = similarity_map.float()
|
| 234 |
aggregated_map = torch.mean(similarity_map, dim=0)
|
| 235 |
|
| 236 |
+
# Create heatmap overlay
|
| 237 |
img_array = np.array(image.convert("RGBA"))
|
|
|
|
|
|
|
| 238 |
similarity_map_array = normalize_similarity_map(aggregated_map).to(torch.float32).cpu().numpy()
|
| 239 |
similarity_map_array = rearrange(similarity_map_array, "h w -> w h")
|
| 240 |
|
|
|
|
| 241 |
similarity_map_image = Image.fromarray((similarity_map_array * 255).astype("uint8")).resize(
|
| 242 |
image.size, Image.Resampling.BICUBIC
|
| 243 |
)
|
| 244 |
|
| 245 |
# Create matplotlib figure
|
| 246 |
+
fig, ax = plt.subplots(figsize=(10, 10))
|
| 247 |
ax.imshow(img_array)
|
| 248 |
ax.imshow(
|
| 249 |
similarity_map_image,
|
|
|
|
| 266 |
print(f"β Heatmap generation error: {str(e)}")
|
| 267 |
return image
|
| 268 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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| 269 |
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| 270 |
@spaces.GPU
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| 271 |
def query_documents(
|
| 272 |
query: str, model_choice: str, top_k: int, show_heatmap: bool = False
|
| 273 |
+
) -> Tuple[Optional[List], Optional[str], Optional[List], Optional[str]]:
|
| 274 |
"""Query the indexed documents."""
|
| 275 |
if not doc_index.images:
|
| 276 |
+
return None, "β οΈ Please upload and index a document first.", None, None
|
| 277 |
|
| 278 |
if not query.strip():
|
| 279 |
+
return None, "β οΈ Please enter a query.", None, None
|
| 280 |
|
| 281 |
try:
|
| 282 |
+
bigemma_results = []
|
| 283 |
+
bigemma_text = ""
|
| 284 |
+
colgemma_results = []
|
| 285 |
+
colgemma_text = ""
|
| 286 |
|
| 287 |
# Query with BiGemma3
|
| 288 |
if model_choice in ["NetraEmbed (BiGemma3)", "Both"]:
|
| 289 |
if doc_index.bigemma_embeddings is None:
|
| 290 |
+
return None, "β οΈ Please index the document with BiGemma3 first.", None, None
|
| 291 |
+
|
| 292 |
+
model, processor = load_bigemma_model()
|
| 293 |
+
|
| 294 |
+
# Encode query
|
| 295 |
+
batch_query = processor.process_texts([query]).to(device)
|
| 296 |
+
with torch.no_grad():
|
| 297 |
+
query_embedding = model(**batch_query, embedding_dim=768)
|
| 298 |
+
|
| 299 |
+
# Compute scores
|
| 300 |
+
scores = processor.score(
|
| 301 |
+
qs=[query_embedding[0].cpu()],
|
| 302 |
+
ps=list(torch.unbind(doc_index.bigemma_embeddings)),
|
| 303 |
+
device=device,
|
| 304 |
+
)
|
| 305 |
+
|
| 306 |
+
# Get top-k results
|
| 307 |
+
top_k_actual = min(top_k, len(doc_index.images))
|
| 308 |
+
top_indices = scores[0].argsort(descending=True)[:top_k_actual]
|
| 309 |
+
|
| 310 |
+
# Format results
|
| 311 |
+
bigemma_text = "### BiGemma3 (NetraEmbed) Results\n\n"
|
| 312 |
+
for rank, idx in enumerate(top_indices):
|
| 313 |
+
score = scores[0, idx].item()
|
| 314 |
+
bigemma_text += f"**Rank {rank + 1}:** Page {idx.item() + 1} - Score: {score:.4f}\n"
|
| 315 |
+
bigemma_results.append(
|
| 316 |
+
(doc_index.images[idx.item()], f"Rank {rank + 1} - Page {idx.item() + 1} (Score: {score:.4f})")
|
| 317 |
+
)
|
| 318 |
|
| 319 |
# Query with ColGemma3
|
| 320 |
if model_choice in ["ColNetraEmbed (ColGemma3)", "Both"]:
|
| 321 |
if doc_index.colgemma_embeddings is None:
|
| 322 |
+
return bigemma_results if bigemma_results else None, bigemma_text if bigemma_text else "β οΈ Please index the document with ColGemma3 first.", None, None
|
| 323 |
+
|
| 324 |
+
model, processor = load_colgemma_model()
|
| 325 |
+
|
| 326 |
+
# Encode query
|
| 327 |
+
batch_query = processor.process_queries([query]).to(device)
|
| 328 |
+
with torch.no_grad():
|
| 329 |
+
query_embedding = model(**batch_query)
|
| 330 |
+
|
| 331 |
+
# Compute scores
|
| 332 |
+
scores = processor.score_multi_vector(
|
| 333 |
+
qs=[query_embedding[0].cpu()],
|
| 334 |
+
ps=list(torch.unbind(doc_index.colgemma_embeddings)),
|
| 335 |
+
device=device,
|
| 336 |
+
)
|
| 337 |
+
|
| 338 |
+
# Get top-k results
|
| 339 |
+
top_k_actual = min(top_k, len(doc_index.images))
|
| 340 |
+
top_indices = scores[0].argsort(descending=True)[:top_k_actual]
|
| 341 |
+
|
| 342 |
+
# Format results
|
| 343 |
+
colgemma_text = "### ColGemma3 (ColNetraEmbed) Results\n\n"
|
| 344 |
+
for rank, idx in enumerate(top_indices):
|
| 345 |
+
score = scores[0, idx].item()
|
| 346 |
+
colgemma_text += f"**Rank {rank + 1}:** Page {idx.item() + 1} - Score: {score:.2f}\n"
|
| 347 |
+
|
| 348 |
+
# Generate heatmap if requested
|
| 349 |
+
if show_heatmap:
|
| 350 |
+
heatmap_image = generate_colgemma_heatmap(
|
| 351 |
+
image=doc_index.images[idx.item()],
|
| 352 |
+
query_embedding=query_embedding,
|
| 353 |
+
image_embedding=doc_index.colgemma_embeddings[idx.item()],
|
| 354 |
+
)
|
| 355 |
+
colgemma_results.append(
|
| 356 |
+
(heatmap_image, f"Rank {rank + 1} - Page {idx.item() + 1} (Score: {score:.2f})")
|
| 357 |
+
)
|
| 358 |
+
else:
|
| 359 |
+
colgemma_results.append(
|
| 360 |
+
(doc_index.images[idx.item()], f"Rank {rank + 1} - Page {idx.item() + 1} (Score: {score:.2f})")
|
| 361 |
+
)
|
| 362 |
|
| 363 |
# Return results based on model choice
|
| 364 |
if model_choice == "NetraEmbed (BiGemma3)":
|
| 365 |
+
return bigemma_results, bigemma_text, None, None
|
| 366 |
elif model_choice == "ColNetraEmbed (ColGemma3)":
|
| 367 |
+
return None, None, colgemma_results, colgemma_text
|
| 368 |
else: # Both
|
| 369 |
+
return bigemma_results, bigemma_text, colgemma_results, colgemma_text
|
| 370 |
|
| 371 |
except Exception as e:
|
| 372 |
import traceback
|
| 373 |
error_details = traceback.format_exc()
|
| 374 |
print(f"Query error: {error_details}")
|
| 375 |
+
return None, f"β Error during query: {str(e)}", None, None
|
| 376 |
+
|
| 377 |
|
| 378 |
# Create Gradio interface
|
| 379 |
with gr.Blocks(title="NetraEmbed Demo") as demo:
|
| 380 |
# Header section
|
| 381 |
+
with gr.Row():
|
| 382 |
+
with gr.Column(scale=1):
|
| 383 |
+
gr.Markdown("# NetraEmbed")
|
| 384 |
+
gr.HTML(
|
| 385 |
+
"""
|
| 386 |
+
<div style="display: flex; gap: 8px; flex-wrap: wrap; margin-bottom: 15px;">
|
| 387 |
+
<a href="https://arxiv.org/abs/2512.03514" target="_blank">
|
| 388 |
+
<img src="https://img.shields.io/badge/arXiv-2512.03514-b31b1b.svg" alt="Paper">
|
| 389 |
+
</a>
|
| 390 |
+
<a href="https://github.com/adithya-s-k/colpali" target="_blank">
|
| 391 |
+
<img src="https://img.shields.io/badge/GitHub-colpali-181717?logo=github" alt="GitHub">
|
| 392 |
+
</a>
|
| 393 |
+
<a href="https://huggingface.co/Cognitive-Lab/ColNetraEmbed" target="_blank">
|
| 394 |
+
<img src="https://img.shields.io/badge/π€%20HuggingFace-Model-yellow" alt="Model">
|
| 395 |
+
</a>
|
| 396 |
+
<a href="https://www.cognitivelab.in/blog/introducing-netraembed" target="_blank">
|
| 397 |
+
<img src="https://img.shields.io/badge/Blog-CognitiveLab-blue" alt="Blog">
|
| 398 |
+
</a>
|
| 399 |
+
<a href="https://cloud.cognitivelab.in" target="_blank">
|
| 400 |
+
<img src="https://img.shields.io/badge/Demo-Try%20it%20out-green" alt="Demo">
|
| 401 |
+
</a>
|
| 402 |
+
</div>
|
| 403 |
+
"""
|
| 404 |
+
)
|
| 405 |
+
gr.Markdown(
|
| 406 |
+
"""
|
| 407 |
|
| 408 |
+
**π Universal Multilingual Multimodal Document Retrieval**
|
| 409 |
|
| 410 |
+
Upload a PDF document, select your model(s), and query using semantic search.
|
| 411 |
+
|
| 412 |
+
**Available Models:**
|
| 413 |
+
- **NetraEmbed (BiGemma3)**: Single-vector embedding with Matryoshka representation
|
| 414 |
+
Fast retrieval with cosine similarity
|
| 415 |
+
- **ColNetraEmbed (ColGemma3)**: Multi-vector embedding with late interaction
|
| 416 |
+
High-quality retrieval with MaxSim scoring and attention heatmaps
|
| 417 |
+
|
| 418 |
+
"""
|
| 419 |
+
)
|
| 420 |
|
| 421 |
+
with gr.Column(scale=1):
|
| 422 |
+
gr.HTML(
|
| 423 |
+
"""
|
| 424 |
+
<div style="text-align: center;">
|
| 425 |
+
<img src="https://cdn-uploads.huggingface.co/production/uploads/6442d975ad54813badc1ddf7/-fYMikXhSuqRqm-UIdulK.png"
|
| 426 |
+
alt="NetraEmbed Banner"
|
| 427 |
+
style="width: 100%; height: auto; border-radius: 8px;">
|
| 428 |
+
</div>
|
| 429 |
+
"""
|
| 430 |
+
)
|
| 431 |
+
|
| 432 |
+
gr.Markdown("---")
|
| 433 |
+
|
| 434 |
+
# Main interface
|
| 435 |
with gr.Row():
|
| 436 |
+
# Column 1: Model & Upload
|
| 437 |
with gr.Column(scale=1):
|
| 438 |
+
gr.Markdown("### π€ Select Model & Upload")
|
| 439 |
model_select = gr.Radio(
|
| 440 |
choices=["NetraEmbed (BiGemma3)", "ColNetraEmbed (ColGemma3)", "Both"],
|
| 441 |
value="Both",
|
| 442 |
label="Select Model(s)",
|
| 443 |
)
|
| 444 |
|
| 445 |
+
pdf_upload = gr.File(
|
| 446 |
+
label="Upload PDFs",
|
| 447 |
+
file_types=[".pdf"],
|
| 448 |
+
file_count="multiple"
|
| 449 |
+
)
|
| 450 |
+
index_btn = gr.Button("π₯ Index Documents", variant="primary", size="sm")
|
| 451 |
|
| 452 |
+
index_status = gr.Textbox(
|
| 453 |
+
label="Indexing Status",
|
| 454 |
+
lines=8,
|
| 455 |
+
interactive=False,
|
| 456 |
+
value="Select model and upload PDFs to start",
|
| 457 |
+
)
|
| 458 |
+
|
| 459 |
+
# Column 2: Query & Results
|
| 460 |
+
with gr.Column(scale=2):
|
| 461 |
+
gr.Markdown("### π Query Documents")
|
| 462 |
query_input = gr.Textbox(
|
| 463 |
label="Enter Query",
|
| 464 |
placeholder="e.g., financial report, organizational structure...",
|
| 465 |
lines=2,
|
| 466 |
)
|
| 467 |
+
|
| 468 |
with gr.Row():
|
| 469 |
+
top_k_slider = gr.Slider(
|
| 470 |
+
minimum=1,
|
| 471 |
+
maximum=10,
|
| 472 |
+
value=5,
|
| 473 |
+
step=1,
|
| 474 |
+
label="Top K Results",
|
| 475 |
+
scale=2,
|
| 476 |
+
)
|
| 477 |
+
heatmap_checkbox = gr.Checkbox(
|
| 478 |
+
label="Show Heatmaps (ColGemma3)",
|
| 479 |
+
value=False,
|
| 480 |
+
scale=1,
|
| 481 |
+
)
|
| 482 |
+
|
| 483 |
+
query_btn = gr.Button("π Search", variant="primary", size="sm")
|
| 484 |
|
| 485 |
gr.Markdown("---")
|
| 486 |
+
gr.Markdown("### π Results")
|
| 487 |
|
| 488 |
# Results section
|
| 489 |
+
with gr.Row(equal_height=True):
|
|
|
|
| 490 |
with gr.Column(scale=1):
|
| 491 |
+
bigemma_results_text = gr.Markdown(
|
| 492 |
+
value="*BiGemma3 results will appear here...*",
|
| 493 |
+
)
|
| 494 |
bigemma_gallery = gr.Gallery(
|
| 495 |
label="BiGemma3 - Top Retrieved Pages",
|
| 496 |
+
show_label=True,
|
| 497 |
columns=2,
|
| 498 |
height="auto",
|
| 499 |
+
object_fit="contain",
|
| 500 |
)
|
| 501 |
with gr.Column(scale=1):
|
| 502 |
+
colgemma_results_text = gr.Markdown(
|
| 503 |
+
value="*ColGemma3 results will appear here...*",
|
| 504 |
+
)
|
| 505 |
colgemma_gallery = gr.Gallery(
|
| 506 |
label="ColGemma3 - Top Retrieved Pages",
|
| 507 |
+
show_label=True,
|
| 508 |
columns=2,
|
| 509 |
height="auto",
|
| 510 |
+
object_fit="contain",
|
| 511 |
)
|
| 512 |
|
| 513 |
+
# Tips
|
| 514 |
+
with gr.Accordion("π‘ Tips", open=False):
|
| 515 |
+
gr.Markdown(
|
| 516 |
+
"""
|
| 517 |
+
- **Both models**: Compare results side-by-side
|
| 518 |
+
- **Scores**: BiGemma3 uses cosine similarity (-1 to 1), ColGemma3 uses MaxSim (higher is better)
|
| 519 |
+
- **Heatmaps**: Enable to visualize ColGemma3 attention patterns (brighter = higher attention)
|
| 520 |
+
- **Refresh**: If you change documents, refresh the page to clear the index
|
| 521 |
+
"""
|
| 522 |
+
)
|
| 523 |
+
|
| 524 |
# Event handlers
|
| 525 |
index_btn.click(
|
| 526 |
fn=index_document,
|
|
|
|
| 531 |
query_btn.click(
|
| 532 |
fn=query_documents,
|
| 533 |
inputs=[query_input, model_select, top_k_slider, heatmap_checkbox],
|
| 534 |
+
outputs=[bigemma_gallery, bigemma_results_text, colgemma_gallery, colgemma_results_text],
|
| 535 |
)
|
| 536 |
|
| 537 |
+
# Enable queue for handling multiple requests
|
| 538 |
+
demo.queue(max_size=20)
|
| 539 |
+
|
| 540 |
+
if __name__ == "__main__":
|
| 541 |
+
demo.launch(debug=True)
|