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"models": [
{
"title": "Claude 3.5 Sonnet",
"provider": "anthropic",
"model": "claude-3-5-sonnet-20241022",
"apiKey": "your-anthropic-api-key-here"
}
],
"experimental": {
"modelContextProtocolServers": [
{
"name": "openproblems-spatial",
"transport": {
"type": "stdio",
"command": "python",
"args": ["-m", "mcp_server.main"],
"cwd": "/home/obi/SpatialAI_MCP"
}
}
]
},
"docs": [
{
"title": "Nextflow Documentation",
"startUrl": "https://www.nextflow.io/docs/latest/"
},
{
"title": "Viash Documentation",
"startUrl": "https://viash.io/docs/"
},
{
"title": "OpenProblems GitHub",
"startUrl": "https://github.com/openproblems-bio/openproblems-v2"
},
{
"title": "Spatial Transcriptomics Task",
"startUrl": "https://github.com/openproblems-bio/task_spatial_decomposition"
},
{
"title": "Scanpy Documentation",
"startUrl": "https://scanpy.readthedocs.io/"
},
{
"title": "Squidpy Documentation",
"startUrl": "https://squidpy.readthedocs.io/"
}
],
"contextProviders": [
{
"name": "codebase",
"params": {}
},
{
"name": "folder",
"params": {}
}
]
}
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