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c75526e | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 | [build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"
[project]
name = "openproblems-spatial-mcp"
version = "0.1.0"
description = "Model Context Protocol server for OpenProblems spatial transcriptomics workflows"
readme = "README.md"
requires-python = ">=3.8"
license = {text = "MIT"}
authors = [
{name = "OpenProblems MCP Contributors"},
]
keywords = [
"mcp",
"model-context-protocol",
"spatial-transcriptomics",
"bioinformatics",
"nextflow",
"viash",
"docker",
"openproblems"
]
classifiers = [
"Development Status :: 3 - Alpha",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: MIT License",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Topic :: Scientific/Engineering :: Bio-Informatics",
]
dependencies = [
"mcp>=1.9.2",
"pyyaml>=6.0",
"requests>=2.31.0",
"click>=8.1.0",
"pandas>=2.0.0",
"numpy>=1.24.0",
"docker>=6.0.0",
"rich>=13.0.0",
]
[project.optional-dependencies]
dev = [
"pytest>=7.0.0",
"pytest-asyncio>=0.21.0",
"black>=23.0.0",
"flake8>=6.0.0",
"mypy>=1.0.0",
]
docs = [
"mkdocs>=1.4.0",
"mkdocs-material>=9.0.0",
"mkdocs-mermaid2-plugin>=0.6.0",
]
[project.scripts]
openproblems-mcp = "mcp_server.cli:main"
openproblems-mcp-server = "mcp_server.main:main"
[project.urls]
Homepage = "https://github.com/openproblems-bio/SpatialAI_MCP"
Documentation = "https://github.com/openproblems-bio/SpatialAI_MCP/docs"
Repository = "https://github.com/openproblems-bio/SpatialAI_MCP"
Issues = "https://github.com/openproblems-bio/SpatialAI_MCP/issues"
[tool.setuptools.packages.find]
where = ["src"]
[tool.black]
line-length = 88
target-version = ['py38']
include = '\.pyi?$'
[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = ["test_*.py"]
python_classes = ["Test*"]
python_functions = ["test_*"]
addopts = "-v --tb=short"
asyncio_mode = "auto"
[tool.mypy]
python_version = "3.8"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = true
no_implicit_optional = true
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