requirements.txt

# Core MCP dependencies
mcp>=1.9.2

# Web interface dependencies
gradio>=5.0.0

# Additional dependencies for bioinformatics integration
pyyaml>=6.0
requests>=2.31.0
click
pathlib
subprocess-run

# Data handling
pandas>=2.0.0
numpy>=1.24.0

# Web requests (for GitHub API)
aiohttp>=3.9.1

# Development and testing
pytest>=7.0.0
pytest-asyncio>=0.21.0
black>=23.0.0
flake8>=6.0.0

# Documentation
mkdocs>=1.4.0
mkdocs-material>=9.0.0

# Optional for advanced features
docker>=6.0.0
rich>=13.0.0