Spaces:
Sleeping
Sleeping
Update app.py
Browse files
app.py
CHANGED
|
@@ -1,51 +1,144 @@
|
|
| 1 |
from fastapi.responses import StreamingResponse, JSONResponse
|
| 2 |
-
from fastapi import FastAPI, File, UploadFile
|
| 3 |
from ndvi_predictor import load_model, normalize_rgb, predict_ndvi, create_visualization
|
|
|
|
| 4 |
from PIL import Image
|
| 5 |
from io import BytesIO
|
| 6 |
import numpy as np
|
| 7 |
import zipfile
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 8 |
|
| 9 |
app = FastAPI()
|
| 10 |
-
|
|
|
|
|
|
|
|
|
|
| 11 |
|
| 12 |
@app.get("/")
|
| 13 |
async def root():
|
| 14 |
-
return {"message": "Welcome to the NDVI prediction API!"}
|
| 15 |
|
| 16 |
-
@app.post("/
|
| 17 |
async def predict_ndvi_api(file: UploadFile = File(...)):
|
|
|
|
| 18 |
try:
|
| 19 |
contents = await file.read()
|
| 20 |
img = Image.open(BytesIO(contents)).convert("RGB")
|
| 21 |
-
|
| 22 |
norm_img = normalize_rgb(np.array(img))
|
| 23 |
-
pred_ndvi = predict_ndvi(
|
| 24 |
-
|
| 25 |
# Visualization image as PNG
|
| 26 |
vis_img_bytes = create_visualization(norm_img, pred_ndvi)
|
| 27 |
vis_img_bytes.seek(0)
|
| 28 |
-
|
| 29 |
# NDVI band as .npy
|
| 30 |
ndvi_bytes = BytesIO()
|
| 31 |
np.save(ndvi_bytes, pred_ndvi)
|
| 32 |
ndvi_bytes.seek(0)
|
| 33 |
-
|
| 34 |
# Create a ZIP containing both files
|
| 35 |
-
|
| 36 |
zip_buf = BytesIO()
|
| 37 |
with zipfile.ZipFile(zip_buf, "w") as zip_file:
|
| 38 |
zip_file.writestr("ndvi_image.png", vis_img_bytes.read())
|
| 39 |
ndvi_bytes.seek(0)
|
| 40 |
zip_file.writestr("ndvi_band.npy", ndvi_bytes.read())
|
| 41 |
-
|
| 42 |
zip_buf.seek(0)
|
| 43 |
-
|
| 44 |
return StreamingResponse(
|
| 45 |
zip_buf,
|
| 46 |
media_type="application/x-zip-compressed",
|
| 47 |
headers={"Content-Disposition": "attachment; filename=ndvi_output.zip"}
|
| 48 |
)
|
|
|
|
|
|
|
| 49 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 50 |
except Exception as e:
|
| 51 |
return JSONResponse(status_code=500, content={"error": str(e)})
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
from fastapi.responses import StreamingResponse, JSONResponse
|
| 2 |
+
from fastapi import FastAPI, File, UploadFile, HTTPException
|
| 3 |
from ndvi_predictor import load_model, normalize_rgb, predict_ndvi, create_visualization
|
| 4 |
+
from yolo_predictor import load_yolo_model, predict_yolo, predict_pipeline
|
| 5 |
from PIL import Image
|
| 6 |
from io import BytesIO
|
| 7 |
import numpy as np
|
| 8 |
import zipfile
|
| 9 |
+
import json
|
| 10 |
+
import rasterio
|
| 11 |
+
from rasterio.transform import from_bounds
|
| 12 |
+
import tempfile
|
| 13 |
+
import os
|
| 14 |
|
| 15 |
app = FastAPI()
|
| 16 |
+
|
| 17 |
+
# Load models at startup
|
| 18 |
+
ndvi_model = load_model("ndvi_best_model.keras")
|
| 19 |
+
yolo_model = load_yolo_model("4c_6c_regression.pt")
|
| 20 |
|
| 21 |
@app.get("/")
|
| 22 |
async def root():
|
| 23 |
+
return {"message": "Welcome to the NDVI and YOLO prediction API!"}
|
| 24 |
|
| 25 |
+
@app.post("/predict_ndvi/")
|
| 26 |
async def predict_ndvi_api(file: UploadFile = File(...)):
|
| 27 |
+
"""Predict NDVI from RGB image"""
|
| 28 |
try:
|
| 29 |
contents = await file.read()
|
| 30 |
img = Image.open(BytesIO(contents)).convert("RGB")
|
|
|
|
| 31 |
norm_img = normalize_rgb(np.array(img))
|
| 32 |
+
pred_ndvi = predict_ndvi(ndvi_model, norm_img)
|
| 33 |
+
|
| 34 |
# Visualization image as PNG
|
| 35 |
vis_img_bytes = create_visualization(norm_img, pred_ndvi)
|
| 36 |
vis_img_bytes.seek(0)
|
| 37 |
+
|
| 38 |
# NDVI band as .npy
|
| 39 |
ndvi_bytes = BytesIO()
|
| 40 |
np.save(ndvi_bytes, pred_ndvi)
|
| 41 |
ndvi_bytes.seek(0)
|
| 42 |
+
|
| 43 |
# Create a ZIP containing both files
|
|
|
|
| 44 |
zip_buf = BytesIO()
|
| 45 |
with zipfile.ZipFile(zip_buf, "w") as zip_file:
|
| 46 |
zip_file.writestr("ndvi_image.png", vis_img_bytes.read())
|
| 47 |
ndvi_bytes.seek(0)
|
| 48 |
zip_file.writestr("ndvi_band.npy", ndvi_bytes.read())
|
| 49 |
+
|
| 50 |
zip_buf.seek(0)
|
|
|
|
| 51 |
return StreamingResponse(
|
| 52 |
zip_buf,
|
| 53 |
media_type="application/x-zip-compressed",
|
| 54 |
headers={"Content-Disposition": "attachment; filename=ndvi_output.zip"}
|
| 55 |
)
|
| 56 |
+
except Exception as e:
|
| 57 |
+
return JSONResponse(status_code=500, content={"error": str(e)})
|
| 58 |
|
| 59 |
+
@app.post("/predict_yolo/")
|
| 60 |
+
async def predict_yolo_api(file: UploadFile = File(...)):
|
| 61 |
+
"""Predict YOLO results from 4-channel TIFF image"""
|
| 62 |
+
try:
|
| 63 |
+
# Save uploaded file temporarily
|
| 64 |
+
with tempfile.NamedTemporaryFile(delete=False, suffix='.tif') as tmp_file:
|
| 65 |
+
contents = await file.read()
|
| 66 |
+
tmp_file.write(contents)
|
| 67 |
+
tmp_file_path = tmp_file.name
|
| 68 |
+
|
| 69 |
+
try:
|
| 70 |
+
# Predict using YOLO model
|
| 71 |
+
results = predict_yolo(yolo_model, tmp_file_path)
|
| 72 |
+
|
| 73 |
+
# Convert results to JSON-serializable format
|
| 74 |
+
results_dict = {
|
| 75 |
+
"boxes": {
|
| 76 |
+
"xyxyn": results.boxes.xyxyn.tolist() if results.boxes is not None else None,
|
| 77 |
+
"conf": results.boxes.conf.tolist() if results.boxes is not None else None,
|
| 78 |
+
"cls": results.boxes.cls.tolist() if results.boxes is not None else None
|
| 79 |
+
},
|
| 80 |
+
"classes": results.boxes.cls.tolist() if results.boxes is not None else None,
|
| 81 |
+
"names": results.names,
|
| 82 |
+
"growth_stages": getattr(results, 'growth_stages', None),
|
| 83 |
+
"orig_shape": results.orig_shape,
|
| 84 |
+
"speed": results.speed
|
| 85 |
+
}
|
| 86 |
+
|
| 87 |
+
# Handle growth stages if present
|
| 88 |
+
if hasattr(results, 'boxes') and hasattr(results.boxes, 'data'):
|
| 89 |
+
# Extract growth stages from the results if available
|
| 90 |
+
if len(results.boxes.data[0]) > 6: # Assuming growth stages are in the data
|
| 91 |
+
growth_stages = results.boxes.data[:, 6].tolist()
|
| 92 |
+
results_dict["growth_stages"] = growth_stages
|
| 93 |
+
|
| 94 |
+
return JSONResponse(content=results_dict)
|
| 95 |
+
|
| 96 |
+
finally:
|
| 97 |
+
# Clean up temporary file
|
| 98 |
+
os.unlink(tmp_file_path)
|
| 99 |
+
|
| 100 |
except Exception as e:
|
| 101 |
return JSONResponse(status_code=500, content={"error": str(e)})
|
| 102 |
+
|
| 103 |
+
@app.post("/predict_pipeline/")
|
| 104 |
+
async def predict_pipeline_api(file: UploadFile = File(...)):
|
| 105 |
+
"""Full pipeline: RGB -> NDVI -> 4-channel -> YOLO prediction"""
|
| 106 |
+
try:
|
| 107 |
+
# Save uploaded file temporarily
|
| 108 |
+
with tempfile.NamedTemporaryFile(delete=False, suffix='.tif') as tmp_file:
|
| 109 |
+
contents = await file.read()
|
| 110 |
+
tmp_file.write(contents)
|
| 111 |
+
tmp_file_path = tmp_file.name
|
| 112 |
+
|
| 113 |
+
try:
|
| 114 |
+
# Run the full pipeline
|
| 115 |
+
results = predict_pipeline(ndvi_model, yolo_model, tmp_file_path)
|
| 116 |
+
|
| 117 |
+
# Convert results to JSON-serializable format
|
| 118 |
+
results_dict = {
|
| 119 |
+
"boxes": {
|
| 120 |
+
"xyxyn": results.boxes.xyxyn.tolist() if results.boxes is not None else None,
|
| 121 |
+
"conf": results.boxes.conf.tolist() if results.boxes is not None else None,
|
| 122 |
+
"cls": results.boxes.cls.tolist() if results.boxes is not None else None
|
| 123 |
+
},
|
| 124 |
+
"classes": results.boxes.cls.tolist() if results.boxes is not None else None,
|
| 125 |
+
"names": results.names,
|
| 126 |
+
"growth_stages": getattr(results, 'growth_stages', None),
|
| 127 |
+
"orig_shape": results.orig_shape,
|
| 128 |
+
"speed": results.speed
|
| 129 |
+
}
|
| 130 |
+
|
| 131 |
+
# Handle growth stages if present
|
| 132 |
+
if hasattr(results, 'boxes') and hasattr(results.boxes, 'data'):
|
| 133 |
+
if len(results.boxes.data[0]) > 6:
|
| 134 |
+
growth_stages = results.boxes.data[:, 6].tolist()
|
| 135 |
+
results_dict["growth_stages"] = growth_stages
|
| 136 |
+
|
| 137 |
+
return JSONResponse(content=results_dict)
|
| 138 |
+
|
| 139 |
+
finally:
|
| 140 |
+
# Clean up temporary file
|
| 141 |
+
os.unlink(tmp_file_path)
|
| 142 |
+
|
| 143 |
+
except Exception as e:
|
| 144 |
+
return JSONResponse(status_code=500, content={"error": str(e)})
|