.github/workflows/api-tests.yml

name: AILIXIR API Tests (Docker)

on:
  workflow_dispatch:

jobs:
  test:
    runs-on: ubuntu-latest

    steps:
      - name: Checkout code
        uses: actions/checkout@v4
        with:
          lfs: true

      - name: Pull and verify Git LFS files
        run: |
          git lfs version
          git lfs pull
          git lfs checkout
          git lfs ls-files

          python - <<'PY'
          from pathlib import Path

          paths = [
              "ai_apps/generation/bundle/models/affinity/config.pkl",
              "ai_apps/generation/bundle/models/affinity/model.pt",
              "ai_apps/generation/bundle/models/generator/egfr_generator.chkpt",
              "ai_apps/generation/bundle/models/generator/reinvent.prior",
          ]

          for p in paths:
              path = Path(p)
              if not path.exists():
                  raise SystemExit(f"Missing required artifact: {p}")

              data = path.read_bytes()[:80]
              size = path.stat().st_size

              print(f"{p}: {size} bytes")

              if data.startswith(b"version https://git-lfs.github.com"):
                  raise SystemExit(f"{p} is still a Git LFS pointer file")
          PY
      - name: Set up Docker Buildx
        uses: docker/setup-buildx-action@v3

      - name: Create .env file for Docker
        run: |
          cp docker/laravel.env .env

      - name: Start Docker containers
        run: |
          docker compose up -d --build

      - name: Wait for services to be healthy
        run: |
          echo "Waiting for Laravel API to be ready..."
          for i in {1..60}; do
            if docker exec ailixir-laravel curl -f http://127.0.0.1:8000 > /dev/null 2>&1; then
              echo "Laravel API is ready"
              break
            fi
            echo "Attempt $i/60: Laravel API not ready yet..."
            sleep 3
          done

          echo "Waiting for ADMET service to be healthy..."
          for i in {1..120}; do
            if docker exec ailixir-admet python -c "import urllib.request; urllib.request.urlopen('http://localhost:8000/health')" > /dev/null 2>&1; then
              echo "ADMET service is healthy internally inside container"
              echo "Waiting additional 10 seconds for service to fully initialize..."
              sleep 10
              break
            fi
            echo "Attempt $i/120: ADMET service not ready yet..."
            sleep 5
          done

          echo "All services are up and running!"
          docker compose ps

      - name: Run database migrations
        run: |
          docker exec ailixir-laravel php artisan migrate --force

      - name: Run API tests
        env:
          BASE_URL: http://localhost:8080/api
          TEST_EMAIL: test@example.com
          TEST_PASSWORD: password123
          TEST_NAME: testuser
        run: |
          docker exec ailixir-laravel \
            python -m pytest tests/ -v --tb=short --junitxml=junit.xml || true

      - name: Copy test results from container
        if: always()
        run: |
          docker cp ailixir-laravel:/var/www/html/junit.xml ./junit.xml || true

      - name: Upload test results
        uses: actions/upload-artifact@v4
        if: always()
        with:
          name: test-results
          path: junit.xml

      - name: Test Summary
        uses: test-summary/action@v2
        with:
          paths: "junit.xml"
        if: always()

      - name: Collect Docker logs
        if: failure()
        run: |
          mkdir -p logs
          docker compose logs laravel > logs/laravel.log
          docker compose logs admet > logs/admet.log
          docker compose logs drug-repurposing > logs/drug-repurposing.log
          docker compose logs chemical-rag > logs/chemical-rag.log

      - name: Upload Docker logs
        uses: actions/upload-artifact@v4
        if: failure()
        with:
          name: docker-logs
          path: logs/

      - name: Cleanup Docker containers
        if: always()
        run: |
          docker compose down -v