Auto-sync: 1f46d85c18b728281ff39b07ee714f979d7b6eec

.env.hf

@@ -35,3 +35,13 @@ CLOUDINARY_API_SECRET=dummy_secret
 
 # Hugging Face Spaces mode (triggers supervisord)
 RUN_MODE=hf
+
+# Mail Service
+MAIL_MAILER=smtp
+MAIL_HOST=smtp.gmail.com
+MAIL_PORT=587
+MAIL_USERNAME=yasmeensaleh747@gmail.com
+MAIL_PASSWORD="fghu ijct vhfu xnud"
+MAIL_ENCRYPTION=tls
+MAIL_FROM_ADDRESS=yasmeensaleh747@gmail.com
+MAIL_FROM_NAME="AILIXIR"

.github/workflows/sync-hf-all.yml

@@ -55,24 +55,16 @@ jobs:
           # Sync files (new, modified, deleted) but preserve the live database
           rsync -av --delete --exclude=ai_apps --exclude=.git --exclude=.env --exclude=.dockerignore --exclude=public/imgs --exclude=storage --exclude=Diagrams --exclude=database/ailixir.sqlite "$GITHUB_WORKSPACE/" .
           cp "$GITHUB_WORKSPACE/README_HF.md" README.md 2>/dev/null || true
-          # Write .env with all required environment variables for HF Spaces
+          # Write .env from .env.hf (single source of truth for all AI service URLs)
+          cp "$GITHUB_WORKSPACE/.env.hf" .env
           printf '%s\n' \
-            'RUN_MODE=hf' \
             'APP_KEY=base64:T/MgQZht16genNJN3aZ5flCuvfe7Zfs4yFhuAFO2itU=' \
-            'APP_URL=https://Ailixir-AI-Team-ailixir-api.hf.space' \
             'APP_DEBUG=true' \
-            'ADMET_AI_URL=https://shdwRow-ailixir-admet.hf.space' \
-            'CHEMICAL_AI_URL=https://RottenShadow-ailixir-chemical-rag.hf.space' \
-            'DRUG_REPURPOSING_URL=https://RottenShadow-ailixir-drug-repurposing.hf.space' \
-            'GENERATION_SERVICE_URL=https://shdwRow-ailixir-generation.hf.space' \
             'GOOGLE_CLIENT_ID=${{ secrets.GOOGLE_CLIENT_ID }}' \
             'GOOGLE_CLIENT_SECRET=${{ secrets.GOOGLE_CLIENT_SECRET }}' \
             'GOOGLE_REDIRECT_URI=https://Ailixir-AI-Team-ailixir-api.hf.space/api/user/auth/google' \
-            'CLOUDINARY_CLOUD_NAME=dummy_cloud' \
-            'CLOUDINARY_API_KEY=dummy_key' \
-            'CLOUDINARY_API_SECRET=dummy_secret' \
             'QUEUE_CONNECTION=sync' \
-            > .env
+            >> .env
           git config user.name "AILIXIR Bot"
           git config user.email "bot@ailixir.app"
           # Prevent the live database from being tracked/committed

Dockerfile

@@ -0,0 +1,115 @@
+# syntax=docker/dockerfile:1
+
+# ============================================================
+# Stage 1: Composer dependencies
+# ============================================================
+FROM composer:2.8 AS vendor
+
+WORKDIR /app
+
+RUN apk add --no-cache icu-dev libzip-dev oniguruma-dev \
+    && docker-php-ext-install intl zip mbstring bcmath pcntl
+
+# Add build argument for composer dev dependencies
+
+COPY composer.json composer.lock ./
+RUN composer install \
+    --no-interaction \
+    --no-scripts \
+    --prefer-dist \
+    --optimize-autoloader
+
+COPY . .
+RUN composer dump-autoload --optimize --classmap-authoritative
+
+# ============================================================
+# Stage 2: Frontend assets (Vite)
+# ============================================================
+FROM node:22-alpine AS assets
+
+WORKDIR /app
+
+COPY package.json package-lock.json ./
+RUN npm ci
+
+COPY vite.config.js ./
+COPY resources ./resources
+COPY public ./public
+
+RUN npm run build
+
+# ============================================================
+# Stage 3: Runtime (PHP CLI on Debian — artisan serve)
+# ============================================================
+FROM php:8.3-cli AS runtime
+
+RUN apt-get update && apt-get install -y \
+    libicu-dev \
+    libzip-dev \
+    libonig-dev \
+    libsqlite3-dev \
+    wget \
+    bzip2 \
+    ca-certificates \
+    openbabel \
+    supervisor \
+    && docker-php-ext-install \
+    pdo_sqlite \
+    zip \
+    intl \
+    mbstring \
+    bcmath \
+    opcache \
+    pcntl \
+    && rm -rf /var/lib/apt/lists/*
+
+COPY docker/php/opcache.ini /usr/local/etc/php/conf.d/opcache.ini
+
+# Install Miniconda
+ENV CONDA_DIR=/opt/conda
+
+RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O /tmp/miniconda.sh && \
+    /bin/bash /tmp/miniconda.sh -b -p $CONDA_DIR && \
+    rm /tmp/miniconda.sh
+
+ENV PATH=$CONDA_DIR/bin:$PATH
+
+# Accept Anaconda ToS (required in CI/Docker)
+RUN conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/main && \
+    conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/r
+
+# Create environment
+RUN conda create -y -p /var/www/html/vina_env -c conda-forge \
+    vina=1.2.5 \
+    python=3.10 \
+    pip
+
+# Install RDKit via pip to bypass Boost C++ solver compatibility conflicts
+RUN /var/www/html/vina_env/bin/pip install rdkit==2025.09.5
+
+# Install testing and service dependencies from requirements.txt
+COPY requirements.txt /tmp/requirements.txt
+RUN /var/www/html/vina_env/bin/pip install -r /tmp/requirements.txt
+
+ENV PATH=/var/www/html/vina_env/bin:$PATH
+
+WORKDIR /var/www/html
+
+COPY --from=vendor --chown=www-data:www-data /app /var/www/html
+COPY --from=assets --chown=www-data:www-data /app/public/build /var/www/html/public/build
+
+COPY docker/entrypoint.sh /usr/local/bin/entrypoint.sh
+COPY docker/supervisord.conf /etc/supervisor/conf.d/supervisord.conf
+RUN chmod +x /usr/local/bin/entrypoint.sh \
+    && mkdir -p storage/framework/{cache,sessions,views} storage/logs bootstrap/cache database \
+    && chown -R www-data:www-data storage bootstrap/cache database /var/www/html/vina_env
+
+USER www-data
+
+EXPOSE 8000 7680
+
+HEALTHCHECK --interval=15s --timeout=5s --start-period=40s --retries=5 \
+    CMD php -r "exit((int)(@file_get_contents('http://127.0.0.1:8000') === false));"
+
+ENTRYPOINT ["/usr/local/bin/entrypoint.sh"]
+CMD ["php", "artisan", "serve", "--host=0.0.0.0", "--port=8000"]