File size: 2,497 Bytes
534218d | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 | #!/bin/bash
# Quick Start Script for Pneumonia Consolidation Segmentation
# This script sets up the environment and runs initial tests
echo "🫁 Pneumonia Consolidation Segmentation - Quick Start"
echo "======================================================"
echo ""
# Check if we're in the right directory
if [ ! -f "dice_calculator_app.py" ]; then
echo "❌ Error: Please run this script from the dice/ directory"
exit 1
fi
echo "✓ Directory check passed"
echo ""
# Step 1: Install dependencies
echo "📦 Step 1: Installing dependencies..."
echo "Command: pip install -r requirements.txt"
echo ""
read -p "Press Enter to continue or Ctrl+C to cancel..."
pip install -r requirements.txt
if [ $? -eq 0 ]; then
echo "✓ Dependencies installed successfully"
else
echo "❌ Error installing dependencies"
exit 1
fi
echo ""
# Step 2: Test Streamlit installation
echo "🧪 Step 2: Testing Streamlit installation..."
streamlit --version
if [ $? -eq 0 ]; then
echo "✓ Streamlit is working"
else
echo "❌ Streamlit test failed"
exit 1
fi
echo ""
# Step 3: Create sample test images (optional)
echo "📸 Step 3: Would you like to preprocess sample images now?"
echo "This will enhance chest X-rays for better consolidation visibility."
echo ""
read -p "Enter 'y' to preprocess images, or 'n' to skip: " preprocess
if [ "$preprocess" = "y" ]; then
echo ""
echo "Enter the path to your input directory (e.g., ../data/Pacientes/):"
read input_dir
if [ -d "$input_dir" ]; then
echo "Processing images from: $input_dir"
echo "Output will be saved to: ./enhanced_images/"
python preprocessing_consolidation.py \
--input "$input_dir" \
--output ./enhanced_images/ \
--batch \
--extension .jpg
echo "✓ Preprocessing complete"
else
echo "❌ Directory not found: $input_dir"
fi
fi
echo ""
# Step 4: Launch Streamlit app
echo "🚀 Step 4: Launch Dice Calculator App"
echo ""
echo "The Streamlit app will open in your browser."
echo "You can then upload images and masks to calculate Dice scores."
echo ""
read -p "Press Enter to launch the app, or Ctrl+C to exit..."
streamlit run dice_calculator_app.py
echo ""
echo "✓ Setup complete!"
echo ""
echo "Next steps:"
echo "1. Annotate your images using CVAT or Label Studio"
echo "2. Use the Dice Calculator to validate annotations"
echo "3. See TODO.md for complete project roadmap"
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