import torch.nn as nn import torch.nn.functional as F from torch_geometric.nn import GCNConv, global_mean_pool class GNNClassifier(nn.Module): def __init__(self, input_dim, output_dim, hidden_channels): super().__init__() self.hidden_channels = hidden_channels self.conv1 = GCNConv(input_dim, hidden_channels) self.conv2 = GCNConv(hidden_channels, hidden_channels) self.conv3 = GCNConv(hidden_channels, hidden_channels) self.lin = nn.Linear(hidden_channels, output_dim) # classification task 0 or 1 def forward(self, x, edge_index, batch): x = self.conv1(x, edge_index) x = x.relu() x = self.conv2(x, edge_index) x = x.relu() x = self.conv3(x, edge_index) # Averaging nodes and got the molecula vector x = global_mean_pool(x, batch) # [batch_size, hidden_channels] x = F.dropout(x, p=0.5, training=self.training) x = self.lin(x) return x