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54a9b55 4f25e4a 54a9b55 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 | """Retrieval evaluation: Accuracy@k and MRR across chunking configurations."""
import itertools
import logging
from dataclasses import dataclass
from pathlib import Path
from ingestion.embedder import Embedder
from ingestion.pipeline import IngestionPipeline
from retrieval.index import VectorIndex
from retrieval.searcher import search
logger = logging.getLogger(__name__)
# ---------------------------------------------------------------------------
# Placeholder test cases β replace with real questions from your PDFs.
# Each dict needs: question, expected_source (filename), expected_page (1-based).
# ---------------------------------------------------------------------------
PLACEHOLDER_TEST_CASES: list[dict] = [
{
"question": "What two components does RAG combine to generate answers?",
"expected_source": "original_rag_paper.pdf",
"expected_page": 1,
},
{
"question": "Which dataset is used to evaluate open-domain question answering in the RAG paper?",
"expected_source": "original_rag_paper.pdf",
"expected_page": 6,
},
{
"question": "What is the role of the retriever in the RAG architecture?",
"expected_source": "original_rag_paper.pdf",
"expected_page": 2,
},
]
# ---------------------------------------------------------------------------
# Metrics dataclass
# ---------------------------------------------------------------------------
@dataclass
class EvalMetrics:
accuracy_at_1: float
accuracy_at_3: float
accuracy_at_5: float
mrr: float # Mean Reciprocal Rank
n_queries: int
def __str__(self) -> str:
return (
f"Acc@1={self.accuracy_at_1:.2f} "
f"Acc@3={self.accuracy_at_3:.2f} "
f"Acc@5={self.accuracy_at_5:.2f} "
f"MRR={self.mrr:.2f} "
f"(n={self.n_queries})"
)
# ---------------------------------------------------------------------------
# Core evaluation
# ---------------------------------------------------------------------------
def evaluate_retrieval(
test_cases: list[dict],
embedder: Embedder,
index: VectorIndex,
k: int = 5,
) -> EvalMetrics:
"""Compute Accuracy@1/3/5 and MRR for a set of labelled questions.
Each test case must have:
question (str) β the query to embed and search
expected_source (str) β filename of the expected chunk (e.g. "paper.pdf")
expected_page (int) β 1-based page number of the expected chunk
A result is considered a hit when both source and page_num match the
expected values. MRR is 0 for queries where the expected chunk does not
appear in the top-k results.
Args:
test_cases: List of labelled query dicts.
embedder: Embedder used at ingestion time (must be the same model).
index: Populated VectorIndex to evaluate against.
k: Maximum rank to consider (search retrieves this many results).
Returns:
EvalMetrics with aggregated scores.
"""
if not test_cases:
raise ValueError("test_cases must be non-empty")
hits_at_1 = hits_at_3 = hits_at_5 = 0
reciprocal_ranks: list[float] = []
for case in test_cases:
results = search(case["question"], embedder, index, k=k).chunks
rank = _find_rank(
results,
expected_source=case["expected_source"],
expected_page=int(case["expected_page"]),
)
if rank is not None:
if rank <= 1:
hits_at_1 += 1
if rank <= 3:
hits_at_3 += 1
if rank <= 5:
hits_at_5 += 1
reciprocal_ranks.append(1.0 / rank)
else:
reciprocal_ranks.append(0.0)
n = len(test_cases)
return EvalMetrics(
accuracy_at_1=hits_at_1 / n,
accuracy_at_3=hits_at_3 / n,
accuracy_at_5=hits_at_5 / n,
mrr=sum(reciprocal_ranks) / n,
n_queries=n,
)
# ---------------------------------------------------------------------------
# Chunking strategy comparison
# ---------------------------------------------------------------------------
def compare_chunking_strategies(
pdf_paths: list[str | Path],
test_cases: list[dict] | None = None,
chunk_sizes: list[int] | None = None,
overlaps: list[int] | None = None,
) -> list[dict]:
"""Re-ingest PDFs under every (chunk_size, overlap) combination and compare retrieval metrics.
Builds a fresh VectorIndex for each configuration so results are
independent. The Embedder is created once and shared across all runs.
Only the recursive_character strategy is evaluated β varying chunk size
and overlap is the most practically useful axis for that splitter.
Args:
pdf_paths: List of PDF paths to ingest for each configuration.
test_cases: Labelled queries (defaults to PLACEHOLDER_TEST_CASES).
chunk_sizes: Character lengths to try (default: [300, 500, 800]).
overlaps: Overlap values to try (default: [0, 50]).
Returns:
List of result dicts, each with keys: chunk_size, overlap, and the
four metric fields. Also prints a formatted comparison table.
"""
if test_cases is None:
test_cases = PLACEHOLDER_TEST_CASES
if chunk_sizes is None:
chunk_sizes = [300, 500, 800]
if overlaps is None:
overlaps = [0, 50]
pdf_paths = [Path(p) for p in pdf_paths]
missing = [p for p in pdf_paths if not p.exists()]
if missing:
raise FileNotFoundError(f"PDF(s) not found: {missing}")
print("Loading embedder (shared across all runs)...")
embedder = Embedder()
configs = list(itertools.product(chunk_sizes, overlaps))
rows: list[dict] = []
for chunk_size, overlap in configs:
label = f"chunk={chunk_size}, overlap={overlap}"
print(f"\nIngesting with {label}...")
index = VectorIndex(dimension=embedder.dimension)
pipeline = IngestionPipeline(
embedder=embedder,
index=index,
strategy="recursive_character",
chunk_size=chunk_size,
overlap=overlap,
)
for pdf_path in pdf_paths:
result = pipeline.ingest_pdf(pdf_path)
if result.error:
logger.warning("Skipped %s: %s", pdf_path.name, result.error)
else:
print(f" {pdf_path.name}: {result.chunks} chunks")
metrics = evaluate_retrieval(test_cases, embedder, index, k=5)
rows.append({
"chunk_size": chunk_size,
"overlap": overlap,
"acc@1": metrics.accuracy_at_1,
"acc@3": metrics.accuracy_at_3,
"acc@5": metrics.accuracy_at_5,
"mrr": metrics.mrr,
})
_print_table(rows)
return rows
# ---------------------------------------------------------------------------
# Helpers
# ---------------------------------------------------------------------------
def _find_rank(results, expected_source: str, expected_page: int) -> int | None:
"""Return the 1-based rank of the first matching result, or None."""
for rank, result in enumerate(results, start=1):
meta = result.metadata
source_match = Path(meta.get("source", "")).name == Path(expected_source).name
page_match = meta.get("page_num") == expected_page
if source_match and page_match:
return rank
return None
def _print_table(rows: list[dict]) -> None:
col_w = [10, 9, 8, 8, 8, 8]
headers = ["chunk_size", "overlap", "Acc@1", "Acc@3", "Acc@5", "MRR"]
divider = "-" * sum(col_w)
print(f"\n{'Chunking strategy comparison (recursive_character)':^{sum(col_w)}}")
print(divider)
print("".join(h.ljust(w) for h, w in zip(headers, col_w)))
print(divider)
for row in rows:
values = [
str(row["chunk_size"]),
str(row["overlap"]),
f"{row['acc@1']:.2f}",
f"{row['acc@3']:.2f}",
f"{row['acc@5']:.2f}",
f"{row['mrr']:.2f}",
]
print("".join(v.ljust(w) for v, w in zip(values, col_w)))
print(divider)
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