kaveh commited on
Commit
34cacad
·
1 Parent(s): 6309d3d

changed CV to cross validation and increased font size in first page

Browse files
streamlit_hf/home.py CHANGED
@@ -91,7 +91,7 @@ html, body {{
91
  margin: 0;
92
  padding: 0;
93
  background: transparent;
94
- overflow: visible;
95
  box-sizing: border-box;
96
  }}
97
  .ff-experiment-svg-wrap {{ width: {width_px}px; max-width: 100%; overflow: visible; }}
@@ -399,11 +399,11 @@ st.markdown(
399
  )
400
 
401
  with st.container(border=True):
402
- # Wider text column → fewer wrapped lines; tighter gap; center figure vs text when heights differ.
403
  try:
404
- fig_col, text_col = st.columns([0.33, 0.67], gap="medium", vertical_alignment="center")
405
  except TypeError:
406
- fig_col, text_col = st.columns([0.33, 0.67], gap="medium")
407
  with fig_col:
408
  if _EXPERIMENT_SVG.is_file():
409
  _render_experiment_schematic(_EXPERIMENT_FIGURE_WIDTH_PX)
 
91
  margin: 0;
92
  padding: 0;
93
  background: transparent;
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+ overflow: hidden;
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  box-sizing: border-box;
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  }}
97
  .ff-experiment-svg-wrap {{ width: {width_px}px; max-width: 100%; overflow: visible; }}
 
399
  )
400
 
401
  with st.container(border=True):
402
+ # Slightly narrower text column; keep balanced spacing and centered vertical alignment.
403
  try:
404
+ fig_col, text_col = st.columns([0.38, 0.62], gap="medium", vertical_alignment="center")
405
  except TypeError:
406
+ fig_col, text_col = st.columns([0.38, 0.62], gap="medium")
407
  with fig_col:
408
  if _EXPERIMENT_SVG.is_file():
409
  _render_experiment_schematic(_EXPERIMENT_FIGURE_WIDTH_PX)
streamlit_hf/lib/formatters.py CHANGED
@@ -35,7 +35,7 @@ LATENT_TABLE_RENAME: dict[str, str] = {
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  "modality_label": "Available modalities",
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  "dataset_idx": "Dataset index",
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  "batch_no": "Batch",
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- "fold": "CV fold",
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  "clone_id": "Clone ID",
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  "clone_size": "Clone size",
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  "cell_type": "Cell type",
 
35
  "modality_label": "Available modalities",
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  "dataset_idx": "Dataset index",
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  "batch_no": "Batch",
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+ "fold": "Cross Validation fold",
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  "clone_id": "Clone ID",
40
  "clone_size": "Clone size",
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  "cell_type": "Cell type",
streamlit_hf/lib/plots.py CHANGED
@@ -129,7 +129,7 @@ def latent_scatter(
129
  "modality_label": "Available modalities",
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  "dataset_idx": "Dataset index",
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  "batch_no": "Batch",
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- "fold": "CV fold",
133
  }
134
  labels_map = {c: _disp[c] for c in _disp if c in d.columns}
135
 
 
129
  "modality_label": "Available modalities",
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  "dataset_idx": "Dataset index",
131
  "batch_no": "Batch",
132
+ "fold": "Cross Validation fold",
133
  }
134
  labels_map = {c: _disp[c] for c in _disp if c in d.columns}
135
 
streamlit_hf/lib/ui.py CHANGED
@@ -178,7 +178,7 @@ section[data-testid="stMain"] .ff-hero .ff-hero-text h1 {
178
  }
179
  .ff-hero-sub {
180
  margin: 0;
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- max-width: 52rem;
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  font-size: 0.98rem;
183
  line-height: 1.55;
184
  color: rgba(226, 232, 240, 0.95);
 
178
  }
179
  .ff-hero-sub {
180
  margin: 0;
181
+ max-width: 100%;
182
  font-size: 0.98rem;
183
  line-height: 1.55;
184
  color: rgba(226, 232, 240, 0.95);
streamlit_hf/pages/1_Single_Cell_Explorer.py CHANGED
@@ -27,9 +27,9 @@ _UMAP_EXPLORER_SUBTITLE = "Hover points for details · drag on the plot to selec
27
  _UMAP_EXPLORER_HELP = f"""
28
  **What this is:** The same **2‑D UMAP** as on **Home**: validation **single cells** in **FateFormer**’s **latent space** (**context vector token representation**), summarised across **5-fold cross-validation** (**2,110** cells before filters). Here you **choose what to colour** and **filter** the cloud.
29
 
30
- **How to read it:** Each point is one cell. **Colour** comes from **Colour by**: e.g. [**CellTag-Multi**]({_CELLTAG_MULTI_ARTICLE_URL}) **label**, **predicted fate**, **prediction correct / wrong**, **CV fold**, **batch**, or **dominant fate %**. **Axes are unitless** (UMAP preserves *local* neighbourhoods only). **Hover** a point for per-cell fields.
31
 
32
- **Using this page:** Use **Filters** to keep modality combinations, restrict **prediction outcome** (all / correct only / wrong only), choose **CV folds**, and set a **dominant fate %** range. In the plot **toolbar** (top right), pick **Box select** or **Lasso select**, then **drag** on the canvas; the app **reruns** and the **Selected points** table fills with those rows. To inspect **one** cell without a selection, scroll to **Inspect by dataset index**.
33
  """
34
 
35
  st.title("Single-Cell Explorer")
@@ -64,7 +64,7 @@ with left:
64
  "label": "CellTag-Multi label",
65
  "predicted_class": "Predicted fate",
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  "correct": "Prediction correct",
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- "fold": "CV fold",
68
  "batch_no": "Batch",
69
  "pct": "Dominant fate %",
70
  }[x],
@@ -87,7 +87,7 @@ with left:
87
  )
88
  folds = sorted(df["fold"].unique())
89
  fold_pick = st.multiselect(
90
- "CV folds",
91
  folds,
92
  default=folds,
93
  help="Validation cross-validation folds to include (each fold’s held-out cells).",
 
27
  _UMAP_EXPLORER_HELP = f"""
28
  **What this is:** The same **2‑D UMAP** as on **Home**: validation **single cells** in **FateFormer**’s **latent space** (**context vector token representation**), summarised across **5-fold cross-validation** (**2,110** cells before filters). Here you **choose what to colour** and **filter** the cloud.
29
 
30
+ **How to read it:** Each point is one cell. **Colour** comes from **Colour by**: e.g. [**CellTag-Multi**]({_CELLTAG_MULTI_ARTICLE_URL}) **label**, **predicted fate**, **prediction correct / wrong**, **Cross Validation fold**, **batch**, or **dominant fate %**. **Axes are unitless** (UMAP preserves *local* neighbourhoods only). **Hover** a point for per-cell fields.
31
 
32
+ **Using this page:** Use **Filters** to keep modality combinations, restrict **prediction outcome** (all / correct only / wrong only), choose **Cross Validation folds**, and set a **dominant fate %** range. In the plot **toolbar** (top right), pick **Box select** or **Lasso select**, then **drag** on the canvas; the app **reruns** and the **Selected points** table fills with those rows. To inspect **one** cell without a selection, scroll to **Inspect by dataset index**.
33
  """
34
 
35
  st.title("Single-Cell Explorer")
 
64
  "label": "CellTag-Multi label",
65
  "predicted_class": "Predicted fate",
66
  "correct": "Prediction correct",
67
+ "fold": "Cross Validation fold",
68
  "batch_no": "Batch",
69
  "pct": "Dominant fate %",
70
  }[x],
 
87
  )
88
  folds = sorted(df["fold"].unique())
89
  fold_pick = st.multiselect(
90
+ "Cross Validation folds",
91
  folds,
92
  default=folds,
93
  help="Validation cross-validation folds to include (each fold’s held-out cells).",