{ "cells": [ { "cell_type": "code", "execution_count": 1, "id": "fateformerapp-bootstrap", "metadata": {}, "outputs": [], "source": [ "import os\n", "from pathlib import Path\n", "_cwd = Path.cwd().resolve()\n", "if _cwd.name == 'notebooks' and (_cwd.parent / 'data').is_dir():\n", " os.chdir(_cwd.parent)\n", "elif (_cwd / 'data').is_dir():\n", " os.chdir(_cwd)" ] }, { "cell_type": "code", "execution_count": 2, "id": "0d9f3a0b", "metadata": {}, "outputs": [], "source": [ "%load_ext autoreload\n", "%autoreload 2\n", "\n", "import os\n", "import pickle\n", "import warnings\n", "from itertools import combinations\n", "\n", "import interpretation.latentspace as ls\n", "import interpretation.predictions as prds\n", "import matplotlib as mpl\n", "import matplotlib.colors as mcolors\n", "import matplotlib.gridspec as gridspec\n", "import matplotlib.pyplot as plt\n", "import numpy as np\n", "import pandas as pd\n", "import scanpy as sc\n", "import seaborn as sns\n", "import torch\n", "import umap\n", "from data import create_dataset, load_data\n", "from interpretation import attentions as att\n", "from interpretation import visualization as viz\n", "from matplotlib.colors import ListedColormap\n", "from matplotlib.legend_handler import HandlerBase\n", "from matplotlib.lines import Line2D\n", "from matplotlib.patches import Patch, Rectangle\n", "from scipy import stats\n", "from scipy.cluster.hierarchy import leaves_list, linkage\n", "from scipy.stats import mannwhitneyu, pearsonr, ttest_rel, wilcoxon\n", "from sklearn.decomposition import PCA\n", "from tabulate import tabulate\n", "from utils.helpers import get_all_modalities_available_samples\n", "\n", "warnings.filterwarnings(\"ignore\")\n", "sns.set_style(\"ticks\")\n", "plt.rcParams.update({\n", " \"font.family\": \"sans-serif\",\n", " \"font.sans-serif\": [\"Arial\", \"DejaVu Sans\"],\n", " \"axes.facecolor\": \"white\",\n", " \"axes.edgecolor\": \"black\",\n", " \"axes.linewidth\": 1.5,\n", " \"axes.grid\": False,\n", " \"figure.facecolor\": \"white\",\n", " \"savefig.facecolor\": \"white\",\n", " \"savefig.dpi\": 300,\n", " \"savefig.bbox\": \"tight\",\n", " \"axes.spines.top\": False,\n", " \"axes.spines.right\": False,\n", " \"axes.spines.left\": True,\n", " \"axes.spines.bottom\": True,\n", " \"axes.labelweight\": \"bold\",\n", " \"axes.labelsize\": 14,\n", " \"axes.titlesize\": 14,\n", " \"axes.titleweight\": \"bold\",\n", " \"xtick.labelsize\": 12,\n", " \"ytick.labelsize\": 12,\n", " \"xtick.major.width\": 1.5,\n", " \"ytick.major.width\": 1.5,\n", " \"xtick.major.size\": 5,\n", " \"ytick.major.size\": 5,\n", " \"legend.frameon\": False,\n", " \"legend.fontsize\": 11,\n", " \"pdf.fonttype\": 42,\n", " \"ps.fonttype\": 42,\n", " \"svg.image_inline\": True,\n", " \"svg.fonttype\": \"none\",\n", "})\n" ] }, { "cell_type": "code", "execution_count": 3, "id": "a44712d2", "metadata": {}, "outputs": [ { "data": { "text/html": [ "
| \n", " | model | \n", "seed | \n", "fold | \n", "combination | \n", "train_auc | \n", "val_auc | \n", "precision | \n", "recall | \n", "f1 | \n", "accuracy | \n", "specificity | \n", "n_samples | \n", "tn | \n", "fp | \n", "fn | \n", "tp | \n", "model_path | \n", "selection_criteria | \n", "run_id | \n", "timestamp | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "ATAC | \n", "0 | \n", "1 | \n", "all_samples | \n", "0.928387 | \n", "0.831579 | \n", "0.894737 | \n", "0.894737 | \n", "0.894737 | \n", "0.849057 | \n", "0.733333 | \n", "53 | \n", "11 | \n", "4 | \n", "4 | \n", "34 | \n", "ckp/ATAC_seed0/best_ATAC_seed0_fold1_AUC_0.832... | \n", "all_samples | \n", "ATAC_seed0_fold1_all_samples | \n", "2025-10-13 01:52:06 | \n", "
| 1 | \n", "ATAC | \n", "0 | \n", "1 | \n", "common_samples | \n", "0.928387 | \n", "0.888889 | \n", "0.920000 | \n", "0.958333 | \n", "0.938776 | \n", "0.909091 | \n", "0.777778 | \n", "33 | \n", "7 | \n", "2 | \n", "1 | \n", "23 | \n", "ckp/ATAC_seed0/best_ATAC_seed0_fold1_AUC_0.832... | \n", "all_samples | \n", "ATAC_seed0_fold1_common_samples | \n", "2025-10-13 01:52:06 | \n", "
| 2 | \n", "ATAC | \n", "0 | \n", "2 | \n", "all_samples | \n", "0.897419 | \n", "0.966667 | \n", "0.974359 | \n", "1.000000 | \n", "0.987013 | \n", "0.981132 | \n", "0.933333 | \n", "53 | \n", "14 | \n", "1 | \n", "0 | \n", "38 | \n", "ckp/ATAC_seed0/best_ATAC_seed0_fold2_AUC_0.967... | \n", "all_samples | \n", "ATAC_seed0_fold2_all_samples | \n", "2025-10-13 01:52:06 | \n", "
| 3 | \n", "ATAC | \n", "0 | \n", "2 | \n", "common_samples | \n", "0.897419 | \n", "0.949074 | \n", "0.960000 | \n", "1.000000 | \n", "0.979592 | \n", "0.969697 | \n", "0.888889 | \n", "33 | \n", "8 | \n", "1 | \n", "0 | \n", "24 | \n", "ckp/ATAC_seed0/best_ATAC_seed0_fold2_AUC_0.967... | \n", "all_samples | \n", "ATAC_seed0_fold2_common_samples | \n", "2025-10-13 01:52:06 | \n", "
| 4 | \n", "ATAC | \n", "0 | \n", "3 | \n", "all_samples | \n", "0.912713 | \n", "0.790541 | \n", "0.795455 | \n", "0.945946 | \n", "0.864198 | \n", "0.792453 | \n", "0.437500 | \n", "53 | \n", "7 | \n", "9 | \n", "2 | \n", "35 | \n", "ckp/ATAC_seed0/best_ATAC_seed0_fold3_AUC_0.791... | \n", "all_samples | \n", "ATAC_seed0_fold3_all_samples | \n", "2025-10-13 01:52:06 | \n", "
| \n", " | mean_rank | \n", "feature | \n", "rank_shift | \n", "rank_att | \n", "rank_shift_in_modal | \n", "rank_att_in_modal | \n", "modality | \n", "importance_shift | \n", "importance_att | \n", "top_10_pct | \n", "... | \n", "std_de | \n", "std_re | \n", "pval | \n", "pval_adj | \n", "log_fc | \n", "group | \n", "pval_adj_log | \n", "mean_diff | \n", "pathway | \n", "module | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1981 | \n", "55.5 | \n", "XMP→Xanthine | \n", "40 | \n", "71 | \n", "3 | \n", "2 | \n", "Flux | \n", "0.070881 | \n", "0.001868 | \n", "both | \n", "... | \n", "0.614697 | \n", "0.854767 | \n", "4.913970e-78 | \n", "0.0 | \n", "0.342436 | \n", "reprogramming | \n", "75.713008 | \n", "0.748136 | \n", "Purine synthesis | \n", "M_145 | \n", "
| 1885 | \n", "69.0 | \n", "Dolichyl phosphate D-mannose+Protein serine→(G... | \n", "53 | \n", "85 | \n", "6 | \n", "3 | \n", "Flux | \n", "0.056596 | \n", "0.001658 | \n", "both | \n", "... | \n", "0.820929 | \n", "0.817798 | \n", "2.116897e-48 | \n", "0.0 | \n", "0.268822 | \n", "reprogramming | \n", "46.896149 | \n", "0.596168 | \n", "O-linked glycan synthesis | \n", "M_125 | \n", "
| 1845 | \n", "72.5 | \n", "2OG→Succinyl-CoA | \n", "48 | \n", "97 | \n", "4 | \n", "4 | \n", "Flux | \n", "0.061477 | \n", "0.001523 | \n", "both | \n", "... | \n", "0.999223 | \n", "1.380158 | \n", "5.583689e-13 | \n", "0.0 | \n", "0.180825 | \n", "reprogramming | \n", "12.170784 | \n", "0.449075 | \n", "Glycolysis + TCA cycle | \n", "M_9 | \n", "
| 1846 | \n", "126.5 | \n", "3PD→Pyruvate | \n", "68 | \n", "185 | \n", "12 | \n", "6 | \n", "Flux | \n", "0.048831 | \n", "0.000957 | \n", "both | \n", "... | \n", "0.728725 | \n", "0.838821 | \n", "1.488236e-40 | \n", "0.0 | \n", "0.227753 | \n", "reprogramming | \n", "39.536517 | \n", "0.533394 | \n", "Glycolysis + TCA cycle | \n", "M_4 | \n", "
| 1833 | \n", "128.0 | \n", "(E,E)-Farnesyl-PP→Ubiquinone | \n", "77 | \n", "179 | \n", "17 | \n", "5 | \n", "Flux | \n", "0.044255 | \n", "0.000983 | \n", "both | \n", "... | \n", "0.779253 | \n", "0.951598 | \n", "4.082193e-62 | \n", "0.0 | \n", "0.321702 | \n", "reprogramming | \n", "60.242978 | \n", "0.753711 | \n", "N-linked glycan synthesis | \n", "M_116 | \n", "
| 1840 | \n", "137.5 | \n", "(Glc)3 (GlcNAc)2 (Man)9 (PP-Dol)1+Protein aspa... | \n", "86 | \n", "189 | \n", "21 | \n", "7 | \n", "Flux | \n", "0.039036 | \n", "0.000945 | \n", "both | \n", "... | \n", "0.615270 | \n", "0.785550 | \n", "1.520189e-22 | \n", "0.0 | \n", "0.157720 | \n", "reprogramming | \n", "21.671179 | \n", "0.353717 | \n", "N-linked glycan synthesis | \n", "M_120 | \n", "
| 1987 | \n", "138.5 | \n", "dCDP→dCTP | \n", "80 | \n", "197 | \n", "19 | \n", "9 | \n", "Flux | \n", "0.041265 | \n", "0.000907 | \n", "both | \n", "... | \n", "0.953575 | \n", "1.044138 | \n", "6.144087e-26 | \n", "0.0 | \n", "0.208046 | \n", "reprogramming | \n", "25.027626 | \n", "0.526818 | \n", "Pyrimidine synthesis | \n", "M_161 | \n", "
| 1921 | \n", "138.5 | \n", "IMP→Hypoxanthine | \n", "75 | \n", "202 | \n", "15 | \n", "10 | \n", "Flux | \n", "0.044716 | \n", "0.000897 | \n", "shift | \n", "... | \n", "0.574026 | \n", "0.823145 | \n", "6.004070e-73 | \n", "0.0 | \n", "0.318511 | \n", "reprogramming | \n", "70.899335 | \n", "0.690068 | \n", "Purine synthesis | \n", "M_143 | \n", "
| 1931 | \n", "141.0 | \n", "Malate→Oxaloacetate | \n", "74 | \n", "208 | \n", "14 | \n", "11 | \n", "Flux | \n", "0.044992 | \n", "0.000866 | \n", "shift | \n", "... | \n", "0.962719 | \n", "0.951607 | \n", "3.960863e-15 | \n", "0.0 | \n", "0.146091 | \n", "reprogramming | \n", "14.300753 | \n", "0.366592 | \n", "Glycolysis + TCA cycle | \n", "M_13 | \n", "
| 1980 | \n", "142.5 | \n", "XMP→Guanine | \n", "50 | \n", "235 | \n", "5 | \n", "14 | \n", "Flux | \n", "0.060469 | \n", "0.000788 | \n", "shift | \n", "... | \n", "0.750582 | \n", "0.948002 | \n", "2.233535e-68 | \n", "0.0 | \n", "0.337266 | \n", "reprogramming | \n", "66.425698 | \n", "0.785923 | \n", "Purine synthesis | \n", "M_148 | \n", "
10 rows × 22 columns
\n", "| \n", " | mean_rank | \n", "feature | \n", "rank_shift | \n", "rank_att | \n", "rank_shift_in_modal | \n", "rank_att_in_modal | \n", "modality | \n", "importance_shift | \n", "importance_att | \n", "top_10_pct | \n", "... | \n", "std_de | \n", "std_re | \n", "pval | \n", "pval_adj | \n", "log_fc | \n", "group | \n", "pval_adj_log | \n", "mean_diff | \n", "pathway | \n", "module | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1981 | \n", "55.5 | \n", "XMP→Xanthine | \n", "40 | \n", "71 | \n", "3 | \n", "2 | \n", "Flux | \n", "0.070881 | \n", "0.001868 | \n", "both | \n", "... | \n", "0.614697 | \n", "0.854767 | \n", "4.913970e-78 | \n", "0.0 | \n", "0.342436 | \n", "reprogramming | \n", "75.713008 | \n", "0.748136 | \n", "Purine synthesis | \n", "M_145 | \n", "
| 1885 | \n", "69.0 | \n", "Dolichyl phosphate D-mannose+Protein serine→(G... | \n", "53 | \n", "85 | \n", "6 | \n", "3 | \n", "Flux | \n", "0.056596 | \n", "0.001658 | \n", "both | \n", "... | \n", "0.820929 | \n", "0.817798 | \n", "2.116897e-48 | \n", "0.0 | \n", "0.268822 | \n", "reprogramming | \n", "46.896149 | \n", "0.596168 | \n", "O-linked glycan synthesis | \n", "M_125 | \n", "
| 1845 | \n", "72.5 | \n", "2OG→Succinyl-CoA | \n", "48 | \n", "97 | \n", "4 | \n", "4 | \n", "Flux | \n", "0.061477 | \n", "0.001523 | \n", "both | \n", "... | \n", "0.999223 | \n", "1.380158 | \n", "5.583689e-13 | \n", "0.0 | \n", "0.180825 | \n", "reprogramming | \n", "12.170784 | \n", "0.449075 | \n", "Glycolysis + TCA cycle | \n", "M_9 | \n", "
| 1846 | \n", "126.5 | \n", "3PD→Pyruvate | \n", "68 | \n", "185 | \n", "12 | \n", "6 | \n", "Flux | \n", "0.048831 | \n", "0.000957 | \n", "both | \n", "... | \n", "0.728725 | \n", "0.838821 | \n", "1.488236e-40 | \n", "0.0 | \n", "0.227753 | \n", "reprogramming | \n", "39.536517 | \n", "0.533394 | \n", "Glycolysis + TCA cycle | \n", "M_4 | \n", "
| 1833 | \n", "128.0 | \n", "(E,E)-Farnesyl-PP→Ubiquinone | \n", "77 | \n", "179 | \n", "17 | \n", "5 | \n", "Flux | \n", "0.044255 | \n", "0.000983 | \n", "both | \n", "... | \n", "0.779253 | \n", "0.951598 | \n", "4.082193e-62 | \n", "0.0 | \n", "0.321702 | \n", "reprogramming | \n", "60.242978 | \n", "0.753711 | \n", "N-linked glycan synthesis | \n", "M_116 | \n", "
| 1840 | \n", "137.5 | \n", "(Glc)3 (GlcNAc)2 (Man)9 (PP-Dol)1+Protein aspa... | \n", "86 | \n", "189 | \n", "21 | \n", "7 | \n", "Flux | \n", "0.039036 | \n", "0.000945 | \n", "both | \n", "... | \n", "0.615270 | \n", "0.785550 | \n", "1.520189e-22 | \n", "0.0 | \n", "0.157720 | \n", "reprogramming | \n", "21.671179 | \n", "0.353717 | \n", "N-linked glycan synthesis | \n", "M_120 | \n", "
| 1987 | \n", "138.5 | \n", "dCDP→dCTP | \n", "80 | \n", "197 | \n", "19 | \n", "9 | \n", "Flux | \n", "0.041265 | \n", "0.000907 | \n", "both | \n", "... | \n", "0.953575 | \n", "1.044138 | \n", "6.144087e-26 | \n", "0.0 | \n", "0.208046 | \n", "reprogramming | \n", "25.027626 | \n", "0.526818 | \n", "Pyrimidine synthesis | \n", "M_161 | \n", "
| 1921 | \n", "138.5 | \n", "IMP→Hypoxanthine | \n", "75 | \n", "202 | \n", "15 | \n", "10 | \n", "Flux | \n", "0.044716 | \n", "0.000897 | \n", "shift | \n", "... | \n", "0.574026 | \n", "0.823145 | \n", "6.004070e-73 | \n", "0.0 | \n", "0.318511 | \n", "reprogramming | \n", "70.899335 | \n", "0.690068 | \n", "Purine synthesis | \n", "M_143 | \n", "
| 1931 | \n", "141.0 | \n", "Malate→Oxaloacetate | \n", "74 | \n", "208 | \n", "14 | \n", "11 | \n", "Flux | \n", "0.044992 | \n", "0.000866 | \n", "shift | \n", "... | \n", "0.962719 | \n", "0.951607 | \n", "3.960863e-15 | \n", "0.0 | \n", "0.146091 | \n", "reprogramming | \n", "14.300753 | \n", "0.366592 | \n", "Glycolysis + TCA cycle | \n", "M_13 | \n", "
| 1980 | \n", "142.5 | \n", "XMP→Guanine | \n", "50 | \n", "235 | \n", "5 | \n", "14 | \n", "Flux | \n", "0.060469 | \n", "0.000788 | \n", "shift | \n", "... | \n", "0.750582 | \n", "0.948002 | \n", "2.233535e-68 | \n", "0.0 | \n", "0.337266 | \n", "reprogramming | \n", "66.425698 | \n", "0.785923 | \n", "Purine synthesis | \n", "M_148 | \n", "
| 1850 | \n", "143.5 | \n", "AICAR→IMP | \n", "63 | \n", "224 | \n", "11 | \n", "13 | \n", "Flux | \n", "0.050658 | \n", "0.000821 | \n", "shift | \n", "... | \n", "0.888378 | \n", "1.074399 | \n", "3.226334e-43 | \n", "0.0 | \n", "0.283827 | \n", "reprogramming | \n", "42.146795 | \n", "0.699027 | \n", "Purine synthesis | \n", "M_135 | \n", "
| 1975 | \n", "150.5 | \n", "UTP→CDP | \n", "54 | \n", "247 | \n", "7 | \n", "17 | \n", "Flux | \n", "0.055885 | \n", "0.000752 | \n", "shift | \n", "... | \n", "0.920829 | \n", "1.082150 | \n", "2.986642e-31 | \n", "0.0 | \n", "0.236744 | \n", "reprogramming | \n", "30.312345 | \n", "0.593868 | \n", "Pyrimidine synthesis | \n", "M_155 | \n", "
| 1851 | \n", "150.5 | \n", "AMP→Adenine | \n", "56 | \n", "245 | \n", "8 | \n", "16 | \n", "Flux | \n", "0.055033 | \n", "0.000765 | \n", "shift | \n", "... | \n", "0.611128 | \n", "0.808690 | \n", "1.823917e-71 | \n", "0.0 | \n", "0.311445 | \n", "reprogramming | \n", "69.467928 | \n", "0.680440 | \n", "Purine synthesis | \n", "M_139 | \n", "
| 1831 | \n", "150.5 | \n", "(E,E)-Farnesyl-PP→Farnesal | \n", "109 | \n", "192 | \n", "27 | \n", "8 | \n", "Flux | \n", "0.033410 | \n", "0.000929 | \n", "both | \n", "... | \n", "0.657325 | \n", "0.776539 | \n", "8.639482e-46 | \n", "0.0 | \n", "0.245369 | \n", "reprogramming | \n", "44.701526 | \n", "0.524325 | \n", "N-linked glycan synthesis | \n", "M_115 | \n", "
| 1990 | \n", "165.0 | \n", "dTMP→Succinyl-CoA | \n", "35 | \n", "295 | \n", "1 | \n", "23 | \n", "Flux | \n", "0.076030 | \n", "0.000642 | \n", "shift | \n", "... | \n", "0.635569 | \n", "0.864864 | \n", "9.558568e-86 | \n", "0.0 | \n", "0.374541 | \n", "reprogramming | \n", "83.271419 | \n", "0.801254 | \n", "Pyrimidine synthesis | \n", "M_164 | \n", "
| 1896 | \n", "165.0 | \n", "GMP→Guanine | \n", "115 | \n", "215 | \n", "30 | \n", "12 | \n", "Flux | \n", "0.031696 | \n", "0.000843 | \n", "shift | \n", "... | \n", "0.621506 | \n", "0.970925 | \n", "4.186456e-58 | \n", "0.0 | \n", "0.310113 | \n", "reprogramming | \n", "56.408117 | \n", "0.707774 | \n", "Purine synthesis | \n", "M_149 | \n", "
| 1947 | \n", "166.5 | \n", "Propanoyl-CoA→Succinate | \n", "76 | \n", "257 | \n", "16 | \n", "18 | \n", "Flux | \n", "0.044457 | \n", "0.000723 | \n", "shift | \n", "... | \n", "0.855520 | \n", "1.009968 | \n", "1.111661e-36 | \n", "0.0 | \n", "0.246502 | \n", "reprogramming | \n", "35.687760 | \n", "0.604253 | \n", "Propionyl-CoA Metabolism | \n", "M_46 | \n", "
| 1967 | \n", "170.0 | \n", "Thymine→Succinyl-CoA | \n", "72 | \n", "268 | \n", "13 | \n", "21 | \n", "Flux | \n", "0.047459 | \n", "0.000688 | \n", "shift | \n", "... | \n", "0.651348 | \n", "0.905919 | \n", "9.118961e-78 | \n", "0.0 | \n", "0.378284 | \n", "reprogramming | \n", "75.592897 | \n", "0.791352 | \n", "Pyrimidine synthesis | \n", "M_166 | \n", "
| 1952 | \n", "178.5 | \n", "Pyrimidine→B-Alanine | \n", "82 | \n", "275 | \n", "20 | \n", "22 | \n", "Flux | \n", "0.039749 | \n", "0.000675 | \n", "shift | \n", "... | \n", "0.742250 | \n", "0.998723 | \n", "1.392078e-53 | \n", "0.0 | \n", "0.304897 | \n", "reprogramming | \n", "51.992755 | \n", "0.714546 | \n", "Beta-Alanine Metabolism | \n", "M_45 | \n", "
| 1891 | \n", "184.5 | \n", "G3P→3PD | \n", "125 | \n", "244 | \n", "36 | \n", "15 | \n", "Flux | \n", "0.030306 | \n", "0.000765 | \n", "shift | \n", "... | \n", "0.726119 | \n", "0.833163 | \n", "5.505461e-37 | \n", "0.0 | \n", "0.215158 | \n", "reprogramming | \n", "35.988140 | \n", "0.504225 | \n", "Glycolysis + TCA cycle | \n", "M_3 | \n", "
20 rows × 22 columns
\n", "| \n", " | mean_rank | \n", "feature | \n", "rank_shift | \n", "rank_att | \n", "rank_shift_in_modal | \n", "rank_att_in_modal | \n", "modality | \n", "importance_shift | \n", "importance_att | \n", "top_10_pct | \n", "... | \n", "std_de | \n", "std_re | \n", "pval | \n", "pval_adj | \n", "log_fc | \n", "group | \n", "pval_adj_log | \n", "mean_diff | \n", "pathway | \n", "module | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1102 | \n", "1.0 | \n", "Foxa1_306 | \n", "1 | \n", "1 | \n", "1 | \n", "2 | \n", "ATAC | \n", "1.816000 | \n", "0.023609 | \n", "both | \n", "... | \n", "0.204779 | \n", "0.139781 | \n", "2.313543e-24 | \n", "0.000000 | \n", "31.658024 | \n", "reprogramming | \n", "21.291822 | \n", "0.338856 | \n", "NaN | \n", "NaN | \n", "
| 1204 | \n", "5.5 | \n", "Gm5294_338 | \n", "7 | \n", "4 | \n", "6 | \n", "4 | \n", "ATAC | \n", "0.173962 | \n", "0.011048 | \n", "both | \n", "... | \n", "0.208045 | \n", "0.192040 | \n", "4.096515e-19 | \n", "0.000000 | \n", "2.993346 | \n", "reprogramming | \n", "17.165901 | \n", "0.289132 | \n", "NaN | \n", "NaN | \n", "
| 1137 | \n", "6.0 | \n", "Foxl1_364 | \n", "9 | \n", "3 | \n", "7 | \n", "3 | \n", "ATAC | \n", "0.166957 | \n", "0.014082 | \n", "both | \n", "... | \n", "0.208045 | \n", "0.192040 | \n", "4.096515e-19 | \n", "0.000000 | \n", "2.993346 | \n", "reprogramming | \n", "17.165901 | \n", "0.289132 | \n", "NaN | \n", "NaN | \n", "
| 1458 | \n", "6.0 | \n", "Nfe2_132 | \n", "3 | \n", "9 | \n", "3 | \n", "7 | \n", "ATAC | \n", "0.245260 | \n", "0.007149 | \n", "both | \n", "... | \n", "0.105776 | \n", "0.092487 | \n", "3.413335e-06 | \n", "0.000013 | \n", "-1.104146 | \n", "dead-end | \n", "4.884190 | \n", "-0.067140 | \n", "NaN | \n", "NaN | \n", "
| 1033 | \n", "8.5 | \n", "Dmrt2_254 | \n", "10 | \n", "7 | \n", "8 | \n", "6 | \n", "ATAC | \n", "0.161776 | \n", "0.007726 | \n", "both | \n", "... | \n", "0.064851 | \n", "0.068684 | \n", "1.496897e-11 | \n", "0.000000 | \n", "-0.812362 | \n", "dead-end | \n", "9.947033 | \n", "-0.065280 | \n", "NaN | \n", "NaN | \n", "
| 1728 | \n", "12.5 | \n", "Tcfap4_20 | \n", "19 | \n", "6 | \n", "10 | \n", "5 | \n", "ATAC | \n", "0.114262 | \n", "0.007729 | \n", "both | \n", "... | \n", "0.064780 | \n", "0.053814 | \n", "7.604965e-14 | \n", "0.000000 | \n", "-0.837195 | \n", "dead-end | \n", "12.146070 | \n", "-0.070648 | \n", "NaN | \n", "NaN | \n", "
| 1104 | \n", "35.0 | \n", "Foxa3_831 | \n", "5 | \n", "65 | \n", "4 | \n", "19 | \n", "ATAC | \n", "0.226905 | \n", "0.002003 | \n", "both | \n", "... | \n", "0.179048 | \n", "0.129700 | \n", "7.341758e-22 | \n", "0.000000 | \n", "3.737926 | \n", "reprogramming | \n", "19.568450 | \n", "0.271260 | \n", "NaN | \n", "NaN | \n", "
| 1109 | \n", "35.5 | \n", "Foxd1_330 | \n", "20 | \n", "51 | \n", "11 | \n", "15 | \n", "ATAC | \n", "0.109568 | \n", "0.002525 | \n", "both | \n", "... | \n", "0.174783 | \n", "0.130199 | \n", "7.870701e-25 | \n", "0.000000 | \n", "7.071175 | \n", "reprogramming | \n", "21.635147 | \n", "0.293782 | \n", "NaN | \n", "NaN | \n", "
| 970 | \n", "36.5 | \n", "Atf5_791 | \n", "24 | \n", "49 | \n", "12 | \n", "14 | \n", "ATAC | \n", "0.101996 | \n", "0.002592 | \n", "both | \n", "... | \n", "0.120686 | \n", "0.105691 | \n", "8.700407e-08 | \n", "0.000000 | \n", "-1.397173 | \n", "dead-end | \n", "6.381671 | \n", "-0.089598 | \n", "NaN | \n", "NaN | \n", "
| 1430 | \n", "37.5 | \n", "NP_595 | \n", "49 | \n", "26 | \n", "17 | \n", "8 | \n", "ATAC | \n", "0.061220 | \n", "0.004686 | \n", "both | \n", "... | \n", "0.149678 | \n", "0.100901 | \n", "1.586768e-11 | \n", "0.000000 | \n", "-1.570293 | \n", "dead-end | \n", "9.925408 | \n", "-0.140376 | \n", "NaN | \n", "NaN | \n", "
10 rows × 22 columns
\n", "