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"""
Integration Example: How to replace SAM predictor calls with HF Space calls
This shows you how to modify your app.py to use the HuggingFace Space
"""
import requests
import json
import base64
from io import BytesIO
from PIL import Image
import numpy as np
from typing import Tuple, Optional
# Your Space URL (update after deployment)
MEDSAM_SPACE_URL = "https://YOUR_USERNAME-medsam-inference.hf.space/api/predict"
class MedSAMSpacePredictor:
"""
Drop-in replacement for SamPredictor that calls HuggingFace Space
Usage:
# OLD CODE:
from segment_anything import SamPredictor
predictor = SamPredictor(sam)
predictor.set_image(image_array)
masks, scores, _ = predictor.predict(point_coords=..., point_labels=...)
# NEW CODE:
predictor = MedSAMSpacePredictor(MEDSAM_SPACE_URL)
predictor.set_image(image_array)
masks, scores, _ = predictor.predict(point_coords=..., point_labels=...)
"""
def __init__(self, space_url: str):
self.space_url = space_url
self.image_array = None
print(f"✓ MedSAM Space Predictor initialized: {space_url}")
def set_image(self, image: np.ndarray):
"""Set the image for segmentation (matches SAM interface)"""
self.image_array = image
def predict(
self,
point_coords: np.ndarray,
point_labels: np.ndarray,
multimask_output: bool = True,
return_logits: bool = False
) -> Tuple[np.ndarray, np.ndarray, Optional[np.ndarray]]:
"""
Predict masks using HuggingFace Space (matches SAM interface)
Args:
point_coords: nx2 array of point coordinates [[x, y], ...]
point_labels: n array of point labels [1, 0, ...]
multimask_output: whether to return multiple masks
return_logits: (ignored) kept for compatibility
Returns:
masks: (N, H, W) array of boolean masks
scores: (N,) array of confidence scores
logits: None (not supported via API)
"""
if self.image_array is None:
raise ValueError("Must call set_image() before predict()")
try:
# Convert numpy array to base64
image = Image.fromarray(self.image_array)
buffered = BytesIO()
image.save(buffered, format="PNG")
img_base64 = base64.b64encode(buffered.getvalue()).decode()
# Prepare points JSON
points_json = json.dumps({
"coords": point_coords.tolist(),
"labels": point_labels.tolist(),
"multimask_output": multimask_output
})
# Call Space API
response = requests.post(
self.space_url,
json={
"data": [
f"data:image/png;base64,{img_base64}",
points_json
]
},
timeout=120 # 2 minute timeout
)
if response.status_code != 200:
raise Exception(f"API returned status {response.status_code}: {response.text}")
# Parse result
result = response.json()
# Gradio wraps output in data array
if "data" in result and len(result["data"]) > 0:
output_json = result["data"][0]
else:
raise Exception("Unexpected API response format")
output = json.loads(output_json)
if not output.get('success', False):
raise Exception(output.get('error', 'Unknown error'))
# Convert masks back to numpy arrays
masks = []
for mask_data in output['masks']:
mask = np.array(mask_data['mask_data'], dtype=bool)
masks.append(mask)
masks = np.array(masks)
scores = np.array(output['scores'])
return masks, scores, None
except requests.exceptions.Timeout:
raise Exception("MedSAM Space API timeout (>120s)")
except requests.exceptions.RequestException as e:
raise Exception(f"MedSAM Space API request failed: {str(e)}")
except Exception as e:
raise Exception(f"MedSAM Space API error: {str(e)}")
# ============================================================================
# Example: How to modify your app.py
# ============================================================================
def example_modification():
"""
Shows how to modify your segment endpoint in app.py
"""
# At the top of app.py, add:
print("# Add to imports:")
print("from integration_example import MedSAMSpacePredictor")
print()
# Replace SAM initialization:
print("# Replace SAM initialization:")
print("""
# OLD:
sam = sam_model_registry["vit_b"](checkpoint="models/sam_vit_h_4b8939.pth")
sam.to(device=device)
sam_predictor = SamPredictor(sam)
# NEW:
sam_predictor = MedSAMSpacePredictor(
"https://YOUR_USERNAME-medsam-inference.hf.space/api/predict"
)
""")
print()
# Usage in endpoint:
print("# Usage in endpoint (NO CHANGES NEEDED!):")
print("""
@app.route('/api/segment', methods=['POST'])
def segment_with_sam():
# ... your existing code ...
# This works exactly the same!
sam_predictor.set_image(image_array)
masks, scores, _ = sam_predictor.predict(
point_coords=np.array([[x, y]]),
point_labels=np.array([1]),
multimask_output=True
)
# Get the best mask
best_mask = masks[np.argmax(scores)]
# ... rest of your code ...
""")
# ============================================================================
# Complete integration example
# ============================================================================
def integrate_with_your_backend(space_url: str):
"""
Complete code snippet to add to your app.py
Save this as: backend/medsam_space_client.py
Then import in app.py
"""
code = f'''
# File: backend/medsam_space_client.py
"""Client for MedSAM HuggingFace Space"""
import requests
import json
import base64
from io import BytesIO
from PIL import Image
import numpy as np
MEDSAM_SPACE_URL = "{space_url}"
class MedSAMSpacePredictor:
"""Drop-in replacement for SAM predictor using HF Space"""
def __init__(self, space_url):
self.space_url = space_url
self.image_array = None
def set_image(self, image):
self.image_array = image
def predict(self, point_coords, point_labels, multimask_output=True, **kwargs):
if self.image_array is None:
raise ValueError("Must call set_image() first")
# Convert to base64
img = Image.fromarray(self.image_array)
buf = BytesIO()
img.save(buf, format="PNG")
img_b64 = base64.b64encode(buf.getvalue()).decode()
# Call API
points_json = json.dumps({{
"coords": point_coords.tolist(),
"labels": point_labels.tolist(),
"multimask_output": multimask_output
}})
resp = requests.post(
self.space_url,
json={{"data": [f"data:image/png;base64,{{img_b64}}", points_json]}},
timeout=120
)
result = json.loads(resp.json()["data"][0])
if not result["success"]:
raise Exception(result.get("error", "API error"))
# Convert back to numpy
masks = np.array([np.array(m["mask_data"], dtype=bool) for m in result["masks"]])
scores = np.array(result["scores"])
return masks, scores, None
# Usage in app.py:
# ----------------
# from medsam_space_client import MedSAMSpacePredictor
#
# # Replace:
# # sam_predictor = SamPredictor(sam)
# # With:
# sam_predictor = MedSAMSpacePredictor(MEDSAM_SPACE_URL)
#
# # Everything else stays the same!
'''
print(code)
return code
if __name__ == "__main__":
print("=" * 80)
print("MedSAM HuggingFace Space Integration Guide")
print("=" * 80)
print()
example_modification()
print()
print("=" * 80)
print("Complete Integration Code")
print("=" * 80)
print()
integrate_with_your_backend("https://YOUR_USERNAME-medsam-inference.hf.space/api/predict")
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